BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483651
Length=2185
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45160.1 | Symbols: HAM1, ATHAM1, LOM1 | GRAS family transcr... 3024 0.0
AT3G60630.1 | Symbols: HAM2, ATHAM2, LOM2 | GRAS family transcr... 580 1e-164
> AT2G45160.1 | Symbols: HAM1, ATHAM1, LOM1 | GRAS family transcription
factor | chr2:18617862-18620150 REVERSE LENGTH=2289
Length=2289
Score = 3024 bits (1637), Expect = 0.0
Identities = 2019/2191 (92%), Gaps = 76/2191 (3%)
Strand=Plus/Plus
Query 56 ttGTCGAGGAGGCGATGCCCTTATCCTTTGAAAGGTTTCAAGGGGAGGGGGTGTTTGGTT 115
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 TTGTTGAGGAGGCGATGCCCTTATCCTTTGAAAGGTTTCAAGGGGAGGGGGTGTTTGGTT 164
Query 116 TA---TCTTCTTCTTTCTATTCAGATTCTCCTAAAATCTGGTCCAATCAAGACAAAACCG 172
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 165 TATCTTCTTCTTCTTTCTATTCAGATTCTCAGAAAATCTGGTCCAATCAAGACAAAACCG 224
Query 173 AAGCAAAAC---AAGATCTTGGTTATGTTGTCGGTGGTCTTTTACCGGAGCCGACGTCTG 229
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 225 AAGCAAAACAAGAAGATCTTGGTTATGTTGTCGGTGGTTTTTTACCGGAGCCGACGTCTG 284
Query 230 TTCTCGACGCTTTAAGGAGTCCTAGTCCTCTCGCTTCTTATTCTTCTACAACCACCACGC 289
||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 285 TTCTCGACGCTCTAAGAAGTCCTAGTCCTCTCGCTTCTTATTCTTCTACCACCACCACGC 344
Query 290 TGTCTTCCTCTCA---CGGCGGTGGTACCACCGTCACCAACACCACCGTAACCGCCGGTG 346
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TGTCTTCCTCTCACGGCGGCGGTGGTACCACCGTCACCAACACCACCGTAACCGCCGGTG 404
Query 347 ATGAT---AATAATAATAAATGTAGTCAGATGGGTTTGGATGATCTTGATGGTGTTCTCT 403
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 405 ATGATAACAATAACAATAAATGTAGTCAGATGGGTTTGGATGATCTTGACGGTGTTCTCT 464
Query 404 CTGCTTCTTCTCCTGGTCAAGAACAGAGTATCTTGAGACTTATCATGGACCCGGGTTCTG 463
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 465 CTGCTTCTTCTCCTGGTCAAGAGCAGAGTATCTTGAGACTTATCATGGACCCGGGTTCTG 524
Query 464 GATTCGGTGTTTTTGACCCGGGCTTT-GGATTCGGGTCTGGTTCCGGGCC--TG--TG-- 516
||||||||||| |||||||| ||| ||||||||||||||||||||||| || ||
Sbjct 525 CCTTCGGTGTTTTCGACCCGGG-TTTCGGATTCGGGTCTGGTTCCGGGCCTGTGTCTGCT 583
Query 517 CCGGTGACTGAAAATTCGAATCCTT-TGTGTAGCTTCCCGTTTCAAGAGATTGCGAATCC 575
||||||| ||| ||||||||| ||| |||||| ||||||||||||||||||| |||||||
Sbjct 584 CCGGTGAGTGATAATTCGAAT-CTTCTGTGTAACTTCCCGTTTCAAGAGATTACGAATCC 642
Query 576 AGCAGAAGCTTTGATCAATCCTACAAATCACTGTTTGTTCTCTAATCCTCCATTATCTCC 635
|||||||||||||||||||||| ||||||| || |||||| ||||||||| ||||||||
Sbjct 643 AGCAGAAGCTTTGATCAATCCTTCAAATCATTGCCTGTTCTATAATCCTCCGTTATCTCC 702
Query 636 ACCGGCGAAACGGTTTAATTCCGGATCTCTTCATCAACCCATTTTCCCTTTCTCGGATCC 695
|||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 703 ACCGGCTAAACGGTTTAATTCCGGATCTCTTCATCAACCCGTTTTCCCTTTATCGGATCC 762
Query 696 GGATCCGGGTCACGACCCGGTTCGTCGGCAGCACCAGTTTCAGTTTCCGTTTCCGTTTCA 755
||||||||||||||||||||||||||| || || |||||||||||||||||| | |||
Sbjct 763 GGATCCGGGTCACGACCCGGTTCGTCGTCAACATCAGTTTCAGTTTCCGTTT---TATCA 819
Query 756 TC-ACAACCAGCAACAACAAAT---GCCGTCTTCTTC-T--GCGGCGGTGGCTATGGTTC 808
| ||||||||||||||||| | | |||||||||| | ||||||||||||||||||
Sbjct 820 -CAACAACCAGCAACAACAATTCCCGTCGTCTTCTTCTTCCACGGCGGTGGCTATGGTTC 878
Query 809 CGGTTCCGTCTCCGGGAATGGCCGGCGATGACCAGTCAGTCATCATCGAGCAGCTGTTCA 868
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 CGGTTCCGTCGCCGGGAATGGCCGGCGATGACCAGTCAGTCATCATCGAGCAGCTGTTCA 938
Query 869 ACGCGGCGGAGCTAATCGGAGCCACCGGAAACAACAATAACGGCGACCACACCGTTCTCG 928
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 939 ACGCGGCGGAGCTAATCGGAACCACCGGAAACAAC---AACGGCGACCACACCGTTCTCG 995
Query 929 CGCAAGGGATATTGGCGCGGCTCAATCACCATCTC-A-AC-AGTAGTAACCATAAGTCTC 985
||||||||||||||||||||||||||||||||||| | || ||||||||||| |||||||
Sbjct 996 CGCAAGGGATATTGGCGCGGCTCAATCACCATCTCAACACTAGTAGTAACCACAAGTCTC 1055
Query 986 CTTTTCAAAGAGCGGCTTCTCACATCGCTGAAGCTCTCCTTTCAATCATCCACAACGACG 1045
| ||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1056 CGTTTCAAAGAGCAGCTTCTCACATCGCTGAAGCTCTCCTCTCACTCATCCACAACGAAT 1115
Query 1046 CATCACCACCGTTAATCACGCCGGAGAATCTGATTCTCCGAATCGCCGCTTACAGATCCT 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 CATCACCACCGTTAATCACGCCGGAGAATCTGATTCTCCGAATCGCCGCTTACAGATCCT 1175
Query 1106 TCTCCGAAACCTCGCCGTTTCTCCAATTCGTTAACTTCACAGCGAATCAATCGATTCTTG 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 TCTCCGAAACCTCGCCGTTTCTCCAATTCGTTAACTTCACAGCGAATCAATCGATTCTTG 1235
Query 1166 AGTCCTGCAACGAATCAGGGTTTGATCGAATCCACATTATCGATTTCGACGTTGGATATG 1225
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1236 AGTCCTGCAACGAATCAGGGTTTGATCGGATCCACATTATCGATTTCGACGTTGGATATG 1295
Query 1226 GAGGACAATGGTCATCTCTAATGCAAGAACTCGCCCCCGGAG--G-A--A-GAAGAAGAA 1279
||||||||||||| |||||||||||||||||||| |||||| | | | |||||||||
Sbjct 1296 GAGGACAATGGTCGTCTCTAATGCAAGAACTCGCTTCCGGAGTTGGAGGAAGAAGAAGAA 1355
Query 1280 ACAGAGCATCATCTCTGAAATTAACAGTCTTTGCTCCTCCTCCTTCAACAGTCTCCGACG 1339
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1356 ACAGAGCATCGTCTCTGAAATTAACAGTCTTTGCTCCTCCACCTTCTACAGTCTCCGACG 1415
Query 1340 AGTTCGAGCTCCGATTT-ACGGAGGAAAATCTCAAAACTTTTGCCGGAGAAGTCAAGATT 1398
|||||||||| || ||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct 1416 AGTTCGAGCTTCG-TTTCACAGAGGAAAATCTCAAAACATTCGCCGGAGAAGTCAAGATT 1474
Query 1399 CCGTTCGAGATCGAGTTGCTAAGCATCGAGCTTCTTCTAAACCCATCTTATTGGCCACTC 1458
|| ||||| |||||||| |||||| | |||||||||||||||||| ||||||||||||||
Sbjct 1475 CCTTTCGAAATCGAGTTACTAAGCGTAGAGCTTCTTCTAAACCCAGCTTATTGGCCACTC 1534
Query 1459 TCTCTCCGTTCATCGGAAAAAGAAGCAATCGCAGTGAATCTTCCCGTAAACTCCGTCGCC 1518
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1535 TCTCTACGTTCATCGGAAAAAGAAGCAATCGCAGTGAATCTTCCAGTAAACTCCGTCGCC 1594
Query 1519 TCCGGTTACCTTCCATTAATCCTCCGTTTCCTCAAACAAATCTCACCAAACGTCGTCGTT 1578
|||||||||||||| ||||||||||| ||||| |||||| | ||||||||| ||||||||
Sbjct 1595 TCCGGTTACCTTCCGTTAATCCTCCGATTCCTTAAACAACTATCACCAAACATCGTCGTT 1654
Query 1579 TGCTCAGACAGAGGATGTGACCGTAACGACGCGCCGTTTCCAAACGCCGTGATCCACGCG 1638
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1655 TGCTCAGACAGAGGATGTGACCGTAACGACGCGCCGTTTCCAAACGCAGTGATTCATTCG 1714
Query 1639 CTTCAGTACCACACTAGTCTGCTTGAGTCTCTGGATGCTAATCAGAACCAAGACGATTCA 1698
||||| ||||||||| ||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1715 CTTCAATACCACACTTCTCTGCTTGAGTCTCTTGATGCTAATCAGAACCAGGACGATTCG 1774
Query 1699 AGTATCGAGAGGTTTTGGGTTCAACCATCGATTGAGAAGCTGTTGATGAAACGACACCGT 1758
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1775 AGTATCGAGAGGTTTTGGGTTCAACCATCGATAGAGAAGCTGTTGATGAAACGACACCGT 1834
Query 1759 TGGATTGAAAGATCTCCACCGTGGAGAAGCTTGTTTACACAATGTGGGTTTTCTCCGGCG 1818
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1835 TGGATTGAAAGATCTCCACCGTGGAGAATCTTGTTTACACAATGTGGGTTTTCTCCGGCG 1894
Query 1819 AGTATGAGTCAGACGGCGGAGGCTCAGGCGGAGTGTTTGTTGCAGAGGAATCCGGTGAGA 1878
||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1895 AGTTTGAGTCAGATGGCGGAAGCTCAGGCGGAGTGTTTGTTGCAGAGAAATCCGGTGAGA 1954
Query 1879 GGGTTTCACGTTGAGAAAAGACAGTCTTCACTTGTCATGTGTTGGCAAAGGAAAGAACTT 1938
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1955 GGGTTTCACGTTGAGAAAAGGCAGTCTTCACTTGTCATGTGTTGGCAAAGGAAAGAACTT 2014
Query 1939 GTTACTGTCTCTGCTTGGAAAT---A-A--A--------CCACAAATCTCTCTA------ 1978
|||||||||||||||||||||| | | | ||||||||||||||
Sbjct 2015 GTTACTGTCTCTGCTTGGAAATGTTAGACGAAGAAGAAACCACAAATCTCTCTCTCGCTT 2074
Query 1979 AGCTAATTTCTCTGCTTTTGCTTTTTCAGATTTTAAACGTCGTTCGTTATGTTGTTCAAT 2038
|||||||||||||| |||| |||| |||||||||||| | ||| |||||||||||||||
Sbjct 2075 AGCTAATTTCTCTGTTTTT-CTTTGTCAGATTTTAAAA-T-GTT-GTTATGTTGTTCAAT 2130
Query 2039 GGTGTTCTTAGTTTCGA--CT-TTGGTGTTTTAACATTTTAAGGAAGTCAGGATATATAA 2095
| ||||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||
Sbjct 2131 GATGTTCTTAGTTTCGAGACTGTTG-TGTTTTAACATTTTAAGGAAGTCAGAATATATAA 2189
Query 2096 TCAAAATCTCCTTTTGTTAGACTTTATTTTGCTCTTTTGG-GTCAATGCATAAATCTCTT 2154
||||||||||||||||||||| |||||||||||||||| | || |||||||||||||||
Sbjct 2190 TCAAAATCTCCTTTTGTTAGATTTTATTTTGCTCTTTTTGAGTTTATGCATAAATCTCTT 2249
Query 2155 ATCCAAAAACAGAAATTGTAAAAGAGATATG 2185
|||||||||||||||||| |||||||||||
Sbjct 2250 GTCCAAAAACAGAAATTGTTAAAGAGATATG 2280
> AT3G60630.1 | Symbols: HAM2, ATHAM2, LOM2 | GRAS family transcription
factor | chr3:22410365-22412608 REVERSE LENGTH=2244
Length=2244
Score = 580 bits (314), Expect = 1e-164
Identities = 727/916 (79%), Gaps = 69/916 (8%)
Strand=Plus/Plus
Query 1087 ATCGCCGCTTACAGATCCTTCTCCGAAACCTCGCCGTTTCTCCAATTCGTTAACTTCACA 1146
||||| ||||||||| | ||||| ||||| || |||||||| |||||||| |||||||||
Sbjct 1220 ATCGCAGCTTACAGAGCTTTCTCAGAAACGTCACCGTTTCTTCAATTCGTCAACTTCACA 1279
Query 1147 GCGAATCAATCGATTCTTGAGTCCTGCAACGAATCAGGGTTTGATCGAATCCACATTATC 1206
|| || ||| ||||||| ||||| | || | |||||||||||| ||||||||| ||
Sbjct 1280 GCAAACCAAACGATTCTCGAGTCAT---TCG-A--AGGGTTTGATCGGATCCACATTGTC 1333
Query 1207 GATTTCGACGTTGGATATGGAGGACAATGGTCATCTCTAATGCAAGAACTCGCCCCCGGA 1266
|||||||| | || |||||||| |||||| | ||||| || ||||| |||| |||||
Sbjct 1334 GATTTCGATATCGGTTATGGAGGTCAATGGGCGTCTCTGATTCAAGAGCTCG---CCGGA 1390
Query 1267 GGAAGAAGA-AGA--AACA-GAGCAT-CATCTCTGAA-ATTAACAGTCTTTGCTCCTCCT 1320
||||| | ||| || ||| | | || || || ||| |||| |||| | || ||
Sbjct 1391 AAAAGAA-ACAGATCTTCATCAGC-TCCGTCGCTAAAGATT-ACAG-CTTT-C-GCTTCT 1444
Query 1321 CCTTCAACAGTCTCCGACGAGTTCGAGCTCCGATTTACGGAGGAAAATCTCA-AAACTTT 1379
|||||||| ||||||||||| |||||||||||||| || || |||||||||| || | ||
Sbjct 1445 CCTTCAACTGTCTCCGACGAATTCGAGCTCCGATTCACTGAAGAAAATCTCAGAAGC-TT 1503
Query 1380 TGCCGGAGAAGTCAAGAT-TC-CGTTCGAGATCGAGTTGC-TAAGCATCGAGCTTCTTC- 1435
||||| ||| | || | || | ||||| |||||| | | ||| ||| ||| ||| ||
Sbjct 1504 CGCCGGCGAA-AC-AGGTGTCTCCTTCGAAATCGAGCT-CTTAAACATGGAGATTC-TCT 1559
Query 1436 TAAACCCATCTTATTGGCCAC--TCTCT-CTCCGTTCATCGGAAAAAGAAGCAATCGCAG 1492
| || ||| |||||||||||| ||| | |||| |||||||| |||||||||||||| |
Sbjct 1560 TGAATCCAACTTATTGGCCACTGTCTTTATTCCGATCATCGGAGAAAGAAGCAATCGCTG 1619
Query 1493 TGAATCTTCCC-GTAAACTCCGTCGCCTCCGGTTACCTTCCATTAATCCTCCGTTTCCTC 1551
|||||| |||| | | |||| | | |||||||||||| ||||| || || |||||||||
Sbjct 1620 TGAATC-TCCCAATCAGCTCCATGGTCTCCGGTTACCTCCCATTGATACTTCGTTTCCTC 1678
Query 1552 AAACAAATCTCACCAAACGTCGTCGTTTGCTCAGACAGAGGATGTGACCGTAAC---GAC 1608
|| |||||||||||||||||||||||||||||||||||| | || ||||||||| |||
Sbjct 1679 AAGCAAATCTCACCAAACGTCGTCGTTTGCTCAGACAGAAGCTGCGACCGTAACAACGAC 1738
Query 1609 GCGCCGTTTCCAAACGCCGTGATCCACGCGCTTCAGTACCACAC-TAGTCTGCTTGAGTC 1667
|||||||| || |||| ||||| |||||||||||||| |||| | |||||| |||||
Sbjct 1739 GCGCCGTTCCCTAACGGTGTGATTAACGCGCTTCAGTACTACACATC-TCTGCTCGAGTC 1797
Query 1668 TCTGGA-TGCT---AATCAGAACCAA-GACG-AT--T-C-A--AGTATCGAGAGGTTTTG 1715
||| || | || |||| ||| || | || | | | | ||||| |||||||||||
Sbjct 1798 TCTCGACT-CTGGGAATCTGAAT-AATG-CGGAAGCTGCTACGAGTATTGAGAGGTTTTG 1854
Query 1716 GGTTCAACCATCGATTGAGAAGCTGTTGATGAAACGACACCGTTGGATTGAAAGATCTCC 1775
|| ||||| ||||| |||| ||||||| ||| || |||||||||| || ||||| ||
Sbjct 1855 TGTGCAACCGTCGATACAGAAACTGTTGACGAATCGTTACCGTTGGATGGAGAGATCACC 1914
Query 1776 ACCGTGGAGAAGCTTGTTTACACAATGTGGGTTTTCTCCGGCGA-GTATGAGTCAGACGG 1834
|||||||||||||| ||| |||||||||||| |||| | || | ||||||||||||
Sbjct 1915 GCCGTGGAGAAGCTTATTTGGGCAATGTGGGTTTACTCCTGTGACGC-TGAGTCAGACGG 1973
Query 1835 CGGAGGCTCAGGCGGAGTGTTTGTTGCAGAGGAATCCGGTGAGAGGGTTTCACGTTG-AG 1893
||||| | || ||||||| |||||||||||||||||| |||||||||||||| ||| ||
Sbjct 1974 CGGAGACACAAGCGGAGTATTTGTTGCAGAGGAATCCAATGAGAGGGTTTCAC-TTGGAG 2032
Query 1894 AAAAGACAGTCTTC---------ACTTGTCATGTGTTGGCAAAGGAAAGAACTTGTTACT 1944
|| ||||||||||| ||||||| |||||||||| ||||||||||||||||||
Sbjct 2033 AAGAGACAGTCTTCGTCGCCTTCACTTGTCTTGTGTTGGCAGAGGAAAGAACTTGTTACT 2092
Query 1945 GTCTCTGCTTGGAAAT 1960
||||| ||||||||||
Sbjct 2093 GTCTCAGCTTGGAAAT 2108
Score = 71.3 bits (38), Expect = 4e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 920 CCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCAC 957
||||||||||||||||||||||||||||||||||||||
Sbjct 1029 CCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCAC 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108382976655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5