BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483654
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45180.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 872 0.0
> AT2G45180.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr2:18626320-18626997
FORWARD LENGTH=678
Length=678
Score = 872 bits (472), Expect = 0.0
Identities = 548/584 (94%), Gaps = 7/584 (1%)
Strand=Plus/Plus
Query 1 TATCTCTCCTTCACATTCACCCCAAAACATTACAAAAAGTTCCAATGGCTTCTAAGGCTC 60
||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 14 TATCTCTCCTTCACATTCATCCCAAAACATTACAAAACGTTACAATGGCTTCTAAGGCTC 73
Query 61 TTGCAGTTACTGCTCTTCTTATTACCCTTAATCTTCTTTTCTTCACCTTTGTTACCTCCA 120
|||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 74 TTGCAGTTACAGCTCTTCTTATTACACTTAATCTTCTTTTCTTCACCTTTGTAACCTCCA 133
Query 121 CAAAATGTCCACCAACTACTCCTAAACCCCCAAAAGTCCCTAAATCCCCAAAGAAGGATC 180
||||||||||||||||||||||||||||||||||| ||| ||||| || ||||||| ||
Sbjct 134 CAAAATGTCCACCAACTACTCCTAAACCCCCAAAAACCCCGAAATCGCCTAAGAAGGCTC 193
Query 181 CTGCCGTTAAACCCACTTGTCCTACCGACACACTTAAGCTCGGTGTTTGCGCAGACTTAT 240
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 194 CTGCCGTGAAACCCACTTGTCCTACCGACACACTTAAGCTTGGTGTTTGCGCAGACTTAT 253
Query 241 TGGGCCTGGTTAACGTTGTTGTTGGTTCTCCACCAAAGACTCCTTGTTGTACACTTCTTC 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 TGGGCCTAGTTAACGTTGTTGTTGGTTCTCCACCAAAGACTCCTTGTTGTACACTTCTTC 313
Query 301 AAGGTCTTGCTAATCTTGAAGCTGCGGTTTGTCTCTGCACCGCTCTTAAAGCCAATGTCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 AAGGTCTTGCTAATCTTGAAGCTGCGGTTTGTCTCTGCACCGCTCTTAAAGCCAATGTCT 373
Query 361 TGGGGATTAATCTCAATGTTCCTGTTGATCTGAGCTTGCTATTGAACTATTGTGGCAAGA 420
||||||||||||||||||||||| ||||||| | |||||| |||||||||||||||||||
Sbjct 374 TGGGGATTAATCTCAATGTTCCTATTGATCTAACCTTGCTGTTGAACTATTGTGGCAAGA 433
Query 421 AACTTCCTTATGGTTTCCAATGTGCTTGACGATTTGAGACTT-AAAAGAGAAAAATCTCt 479
|| ||||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct 434 AAGTTCCTCATGGTTTCCAATGTTCTTGAAGATTTGAGACTTTAAAAGAGAAAAATCTCT 493
Query 480 tt--tt-gcaatgtttttatttgtttgtttctactggtatctattgtttttgtGAGAAAA 536
|| || || |||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 494 TTGGTTTGCTATGTTTTTATATGTTTGTTTCTACTGTTATCTATTGTTTTTGTGAGAAAA 553
Query 537 AACCTTTGTTTCTCTCA-TATTGAGTTTGATGTAATGCTTGAGC 579
| | |||||| || ||| | ||||||||||||||||||||||||
Sbjct 554 AGC-TTTGTT-CTGTCACTGTTGAGTTTGATGTAATGCTTGAGC 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5