BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483703
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45670.1 | Symbols: | calcineurin B subunit-related | chr2:... 3029 0.0
> AT2G45670.1 | Symbols: | calcineurin B subunit-related | chr2:18814709-18818463
REVERSE LENGTH=2062
Length=2062
Score = 3029 bits (1640), Expect = 0.0
Identities = 1946/2081 (94%), Gaps = 71/2081 (3%)
Strand=Plus/Plus
Query 1 AAGCGTGTACCAAtctctcccgctctg------tctctctctttcctccatctctctgtg 54
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 AAGCGTGTACCAATCTCTCCCGCTCTGTCTCTCTCTCTCTCTTTCCTCCATCTCTCTGTG 60
Query 55 ttcttctTACAGACACCGAGAGAATGGCGGATCCTGATTTGTCGTGTCCGTTGATCCACC 114
||||||||||||||||| ||||||||||||||||||| |||| | ||| ||||||||||
Sbjct 61 TTCTTCTTACAGACACC--GAGAATGGCGGATCCTGATCTGTCTTCTCCTTTGATCCACC 118
Query 115 ATCAATCCTCCGATCAACCTGAAGTTGTTATCTC-A------A--TCGACGACGACGAGT 165
|||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 119 ATCAATCCTCCGATCAACCTGAAGTTGTTATCTCTATCGCCGACGACGACGACGACGAGT 178
Query 166 CAGGACTCAA---TCTT-C--CC------G---CTC--G--T-----GGTTTTGAGTTTG 201
|||||||||| |||| | || | ||| | | |||||||||||||
Sbjct 179 CAGGACTCAATCTTCTTCCAGCCGTTGTTGACCCTCGTGTTTCACGAGGTTTTGAGTTTG 238
Query 202 ACCATCGTAATCCTTATGGGTTTCTCAGCGAGTCCGAGCCTCCGGTTCTCGGTCCGACGA 261
|||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 239 ACCATCTTAATCCTTATGGCTTTCTCAGCGAGTCAGAGCCTCCGGTTCTCGGTCCGACGA 298
Query 262 CGGTGGATCCATTCCGGAACAATACACCTGGAGTTAGCGGATTGTACGAGGCGATTAAGA 321
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 299 CGGTGGATCCATTCCGGAACAATACACCTGGAGTTAGCGGATTGTACGAAGCGATTAAGC 358
Query 322 TCGTGATTTGTCTTCCGATTGCTCTGATTAGACTTGTTCTGTTTGGTGCTAGCTTAGCTG 381
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 359 TCGTGATTTGTCTTCCGATTGCTCTGATTAGACTTGTTCTCTTTGCTGCTAGCTTAGCTG 418
Query 382 TTGGTTACTTGGCTACAAAATTAGCTCTTGCTGGCTGGAAAGATAAAGAGAACCCTATGC 441
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 419 TTGGTTACTTGGCTACAAAATTGGCACTTGCTGGCTGGAAAGATAAAGAGAACCCTATGC 478
Query 442 CTCTTTGGAGATGCAGAATCATGTGGATTACTCGGATCTGTACCAGATTTATCCTCTTCT 501
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 479 CTCTTTGGAGATGCAGAATCATGTGGATTACTCGGATCTGTACCAGATGTATCCTCTTCT 538
Query 502 CTTTTGGCTATCAGTGGATAAGACGGAAAGGGAAACCTGCTCGCAGAGAGATTGCTCCCA 561
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 539 CTTTTGGCTATCAGTGGATAAGAAGGAAAGGGAAACCTGCTCGGAGAGAGATTGCTCCGA 598
Query 562 TCGTTGTATCGAACCATGTTTCTTATATTGAACCAATCTTCTACTTCTATGAATTATCAC 621
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTGTTGTATCAAATCATGTTTCTTATATTGAACCAATCTTCTACTTCTATGAATTATCAC 658
Query 622 CGACCATTGTTGCATCTGAGTCACATGATTCACTTCCATTTGTTGGAACTATTATCAGGG 681
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CGACCATTGTTGCATCGGAGTCACATGATTCACTTCCATTTGTTGGAACTATTATCAGGG 718
Query 682 CAATGCAGGTGATATATGTGAATAGATTCTCACAGACATCAAGGAAGAACGCTGTGCATG 741
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 CAATGCAGGTGATATATGTGAATAGATTCTCACAGACATCAAGGAAGAATGCTGTGCATG 778
Query 742 AAATAAAGAGAAAAGCTTCCTGCGATAGATTTCCTCGTCTGCTGTTATTCCCCGAAGGTA 801
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 779 AAATAAAGAGAAAAGCTTCCTGCGATAGATTTCCTCGTCTGCTGTTATTCCCCGAAGGAA 838
Query 802 CCACGACTAATGGGAAAGTTCTTATTTCCTTCCAACTCGGTGCTTTCATCCCTGGTTACC 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CCACGACTAATGGGAAAGTTCTTATTTCCTTCCAACTCGGTGCTTTCATCCCTGGTTACC 898
Query 862 CTATTCAACCTGTAGTGGTCCGGTATCCCCATGTACATTTTGATCAATCCTGGGGAAACA 921
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 899 CTATTCAACCTGTAGTAGTCCGGTATCCCCATGTACATTTTGATCAATCCTGGGGAAATA 958
Query 922 TCTCTCTGTTGATGCTCATGTTTAGAATGTTCACCCAGTTTCACAATTTCATGGAGGTTG 981
||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 959 TCTCTTTGTTGACGCTCATGTTTAGAATGTTCACTCAGTTTCACAATTTCATGGAGGTTG 1018
Query 982 AATACCTTCCAGTAATATACCCCAGTGAAAAGCAAAAACAGAATGCTGTGCGTCTCTCAC 1041
|||| ||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1019 AATATCTTCCTGTAATCTATCCCAGTGAAAAGCAAAAGCAGAATGCTGTGCGTCTCTCAC 1078
Query 1042 AGAAGACCAGTCATGCAATTGCAACATCTTTGAATGTCGTCCAAACATCCCATTCTTATG 1101
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1079 AGAAGACTAGTCATGCAATTGCAACATCTTTGAATGTCGTCCAAACATCCCATTCTTTTG 1138
Query 1102 CGGACTTGATGCTACTCAACAGAGCAACTGAGTTAAAGCTGGAGAACCCCTCAAATTACA 1161
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CGGACTTGATGCTACTCAACAAAGCAACTGAGTTAAAGCTGGAGAACCCCTCAAATTACA 1198
Query 1162 TGGTTGAAATGGCAAGAGTTGAGTCACTCTTCCATGTAAGCAGCTTAGAGGCAACGCGAT 1221
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1199 TGGTTGAAATGGCAAGAGTTGAGTCGCTATTCCATGTAAGCAGCTTAGAGGCAACGCGAT 1258
Query 1222 TTTTGGATATATTTGTTTCCATGATTCCCGACTCGAGTGGACGTGTTAGGTTACATGACT 1281
||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1259 TTTTGGATACATTTGTTTCCATGATTCCGGACTCGAGTGGACGTGTTAGGCTACATGACT 1318
Query 1282 TTCTTCGGGGTCTTAAACTGAAACCTTGCCCTCTTTCTAAAAGGATATTTGAGTTCATCG 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TTCTTCGGGGTCTTAAACTGAAACCTTGCCCTCTTTCTAAAAGGATATTTGAGTTCATCG 1378
Query 1342 ATGTGGAGAAAGTCGGATCAATCACTTTCAAACAGTTCTTGTTTGCCTCGGGCCATGTAT 1401
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1379 ATGTGGAGAAGGTCGGATCAATCACTTTCAAACAGTTCTTGTTTGCCTCGGGCCACGTGT 1438
Query 1402 TGACACAGCCGCTTTTTAAGAAAACATGCGAGCTAGCCTTTTCCCATTGCGATGCAGATG 1461
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TGACACAGCCGCTTTTTAAGCAAACATGCGAGCTAGCCTTTTCCCATTGCGATGCAGATG 1498
Query 1462 GAGATGGCTATATTACAATTCAAGAACTTGGAGACGCTCTCAAAAACACAATCCCAAGCT 1521
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||
Sbjct 1499 GAGATGGCTATATTACAATTCAAGAACTCGGAGAAGCTCTCAAAAACACAATCCCAAACT 1558
Query 1522 TGAACAAGGACGAGATTCAAGGAATGTACCATTTGCTAGACGACGACCAAGATCAAAGAA 1581
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TGAACAAGGACGAGATTCGAGGAATGTACCATTTGCTAGACGACGACCAAGATCAAAGAA 1618
Query 1582 TCAGCCAAAATGACTTGTTGTCCTGCTTAAGAAGAAACCCTCTTCTCATAGCGATCTTTG 1641
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1619 TCAGCCAAAATGACTTGTTGTCCTGCTTAAGAAGAAACCCTCTTCTCATAGCCATCTTTG 1678
Query 1642 CACCTGACTTGGCCCCATCATAACACAGAGAGACAAAATGGCTGGCTAAGATTTGTGATG 1701
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1679 CACCTGACTTGGCCCCAACATAACACAGAGAGACAAAATGGCTGGCTAAGATTTGTG--G 1736
Query 1702 GGTGCGATGATTATAAACTTGTCTTTGTGGTATATTAT-A--CCTTTTGTTTTGTCTTCA 1758
|||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1737 --TGCGATGATTGTAAACTTGTCTTTGTGGTATATTATTATACCTTTTGTTTTGTCTTCA 1794
Query 1759 TATTTCATTTCAGCTAGTAAAAAGAAGGGACTGCTATGTTTTTGGCCTATATATACATCC 1818
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 1795 TATTTGATTTCAGCTAGTAAAAAGAAGGGACTGCTATGTTTTTAGCCTATATATATACCC 1854
Query 1819 TCCTCCACCAACATGGATCCATCCTTTTCACTTTGAGTGCTGGACTATAACTGCGTGTCG 1878
||||||| | ||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1855 TCCTCCA--A-CATGGATCCATCCTTTT------GAGTGTTGGACTATAACTGCTTGTCG 1905
Query 1879 TTTTCTACCCCCAAAAAACGCTATGGTGTTTGCTCCTCTAGTTCTGAGCAAACTTTGCTG 1938
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1906 TTTTCCACCCC-AAAAAACGCTATGGTGTTTGCTCCTCTAGTTCTGAGCAAACTTTGCTG 1964
Query 1939 TATTTGttttttttttttCCCATTTTTGGGGTTACATTACATATGTATTATGATTATCCA 1998
||||||||||||| | | |||||||||||||||||||||||||||||| | |||
Sbjct 1965 TATTTGTTTTTTTGT---C--ATTTTTGGGGTTACATTACATATGTATTAT--T---CCA 2014
Query 1999 ACAAATTTCGATTGTATTCAGTGGAAGTTTTATTGTAAAAT 2039
| | | ||||||||||||||||||| ||||||| ||||||
Sbjct 2015 A-A--TCTCGATTGTATTCAGTGGAAATTTTATTTTAAAAT 2052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101053697085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5