BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483704
Length=1622
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45680.1 | Symbols: | TCP family transcription factor | ch... 2425 0.0
AT2G45685.1 | Symbols: | other RNA | chr2:18820691-18822184 FO... 1892 0.0
> AT2G45680.1 | Symbols: | TCP family transcription factor |
chr2:18820242-18821889 REVERSE LENGTH=1648
Length=1648
Score = 2425 bits (1313), Expect = 0.0
Identities = 1545/1651 (94%), Gaps = 40/1651 (2%)
Strand=Plus/Plus
Query 1 GACGTGAAACGCCGTTAAAACTATTCTTTCCCATTGTATCCGCTTTTAACAACTCTAGTC 60
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 5 GACGTGTAACGCCGTTAAAACGATTCTTTCCCATTGTATCCGCTTTTAACAACTCTCGTC 64
Query 61 GTCATCTCCACCGTCCGTTTTCTCTCAGCTATATTTTAATGGCGACGATTCAGAAGCAAG 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 65 GTCATCTCCACCGTCCGTTTTCTCTCAGCTATATTTTAATGGCGACAATTCAGAAGCTTG 124
Query 121 AAGAAGTTGGAGGCAAAGATCAAAGC-CTAAGAGCCATTGATCTAACCATCATCAACGGC 179
||||||||| |||||||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct 125 AAGAAGTTGCAGGCAAAGATCAAA-CTCTAAGAGCCGTTGATCTAACCATCATCAACGGC 183
Query 180 GTCAGAAACGTCGAAACTTCAAGACCTTTCCAAGTAAATCCCACAGTGAGTCTCGAGCCT 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GTCAGAAACGTCGAAACTTCAAGACCTTTCCAAGTAAATCCCACAGTGAGTCTCGAGCCC 243
Query 240 AAGGCGGAGCCGGTGATGCCGTCGATTTCAATGTCTTTAGCTCCACCGTCTTCAACGGGA 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 244 AAGGCGGAGCCGGTGATGCCGTCGTTTTCAATGTCTTTAGCTCCACCGTCTTCGACAGGA 303
Query 300 CCACCATTGAAGAGAGCTTCGACTAAAGACCGTCACACGAAGGTTGAAGGAAGAGGGAGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CCACCATTGAAGAGAGCTTCGACTAAAGACCGTCACACGAAGGTTGAAGGAAGAGGGAGA 363
Query 360 AGGATACGGATGCCTGCCACGTGTGCGGCTAGGATTTTTCAACTAACTCGAGAGTTAGGT 419
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 364 AGGATACGGATGCCTGCCACGTGTGCGGCTAGGATTTTTCAATTAACTCGAGAGTTAGGT 423
Query 420 CACAAATCCGACGGCGAAACGATTCGGTGGTTGTTGGAGAACGCTGAGCCGGCGATTATC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CACAAATCCGACGGCGAAACGATTCGGTGGTTGTTGGAGAACGCTGAGCCGGCGATTATA 483
Query 480 GCCGCCACGGGAACGGGAACGGTTCCCGCCATCGCTATGTCGGTTAACGGAACCCTAAAA 539
||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 484 GCCGCCACGGGTACGGGAACGGTTCCCGCCATCGCCATGTCGGTTAACGGAACCTTAAAA 543
Query 540 ATCCCGACGACAACGAACGCTGATTCTGATTTGGGTGAAAATCCGATGAAGAAGAAACGT 599
||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 544 ATCCCGACGACGACGAACGCTGATTCTGATATGGGTGAAAATCTGATGAAGAAGAAACGT 603
Query 600 AAACGACCTTCTAACAGTGAGTATATAGACATAAGCGACGCCGTTTCGGCTTCCTCCGGT 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 604 AAACGACCTTCTAACAGTGAGTATATAGACATAAGCGACGCCGTTTCAGCTTCCTCCGGT 663
Query 660 TTAGCTCCCGTTTCCACGACGACAACGACCCAACCGCCGCAAGCTCTGGCATCATCCACC 719
|||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 664 TTAGCTCCAATTGCCACGACGACAACGATCCAACCTCCGCAAGCTCTGGCATCATCCACT 723
Query 720 GTGGCTCAGCAACTTCTGCCGCAAGGAATGTATCCGATGTGGGCTATTCCATCAAACGCA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GTGGCTCAGCAACTTCTGCCGCAAGGAATGTATCCGATGTGGGCTATTCCATCAAACGCA 783
Query 780 GTGATTCCGACGGTCGGAGCTTTCTTCTTGGTTCCACAAATCACTGGTCCGTCGAATCAG 839
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 784 ATGATTCCGACGGTCGGAGCTTTCTTCTTGATTCCACAAATCGCTGGTCCGTCGAATCAG 843
Query 840 CCTCAGTTATTAGCTTTTCCGGCCGCGGCCCCGTCGCCGTCGTCTTACGTCGCCGCTGTT 899
|||||||||||||||||||| ||||| || | |||||||||||||||||||||||||||
Sbjct 844 CCTCAGTTATTAGCTTTTCCCGCCGCCGCTGCTTCGCCGTCGTCTTACGTCGCCGCTGTT 903
Query 900 CAGCAGGCTTCCTCGATGGCTAGACCACCTCCTCTT-CAAGTTGTTCCAAGCAGCGGCTT 958
|| ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 904 CAACAGGCTTCCACGATGGCTAGACCACCTCCT-TTACAAGTTGTTCCAAGCAGCGGCTT 962
Query 959 TGTATCCGTTTCAGACGTTAGCGGTTCAAATTTATCAAGAACGACGTCGGTTATGGCTCC 1018
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 963 TGTATCCGTTTCAGACGTTAGCGGTTCGAATTTATCAAGAGCGACGTCGGTTATGGCTCC 1022
Query 1019 GAGCTCAAGCTCCGGCATAACAATCAGTGGTTCATCGTCTACTGCAACAACAACGACACA 1078
|||||||||||| ||| |||||| | || |||||||||| | ||||||||||||||| ||
Sbjct 1023 GAGCTCAAGCTCAGGCGTAACAACCGGTAGTTCATCGTCAATTGCAACAACAACGACGCA 1082
Query 1079 CACGCTCAGAGACTTCTCGCTAGAGATATACGAGAAACAAGAGCTTCACCAGTTCATGAG 1138
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 CACGCTGAGAGACTTCTCCCTAGAGATATACGAGAAACAAGAGCTTCACCAGTTCATGAG 1142
Query 1139 CACCACAACAACACGGTCATCGAACCACTGAAGAAAAGAAAGCAAAGCGACGGCGTATGA 1198
|||||||||| ||||||||||||||||||||||||||||||| ||| || |||||||| |
Sbjct 1143 CACCACAACAGCACGGTCATCGAACCACTGAAGAAAAGAAAGGAAA-CGGCGGCGTATTA 1201
Query 1199 GTGATCGG--TAAAGGCACGTGGGCACGTGAAGAAGTGCACGTGTTAAGAAGTGGGCCTA 1256
|||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1202 GTGATCGGAAAAAAAGCACGTGTGCACATGAAGAAGTGCACGTGTTAAGAAGTGGGCCTC 1261
Query 1257 GATTTTAGGCAGAAGTGGGTCAACACTTACCAAAAAGAGAGTGGGA-GGAGGAAGGGA-A 1314
|||||||||||||||||||||||||| |||||||||||||| ||| ||||| | ||| |
Sbjct 1262 GATTTTAGGCAGAAGTGGGTCAACACGCACCAAAAAGAGAGT-GGAGGGAGG-A-GGAGA 1318
Query 1315 GGGGCCACACGGCTCCCACCTTACGCATAGCTTCCGAGGCAGCCAGGTTGGGTGTGGTCC 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GGGGCCACACGGCTCCCACCTTACGCATAGCTTCCGAGGCAGCCAGGTTGGGTGTGGTCC 1378
Query 1375 CCAAATGGTTAGAGCTACGTGGTCCGTATGAGTAGGACCAGCTTAAGCATAA---T--TT 1429
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 1379 CCAAATGGTTAGAGCTACGTGGTCCGTATGAGTAGGACCAGCTTAAGCTTAAGCATAATT 1438
Query 1430 -------TTT-G-------GGTGGGGGCTCACCACTTTGTCTTGACTTTTTTGGTCTTTG 1474
||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CGAAACGTTTCGTTTTTTTGGTGGGGGCTCACCACTTTGTCTTGACTTTTTTGGTCTTTG 1498
Query 1475 TAATTA-ACAAAA-AATATTTATTGAAGCCCTCTCTAAGTCATGGTCCACTCAACAACAA 1532
||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TAATTTTACAAAATAAGATTTATTGAAGCCCTCTCTAAGTCATGGTCCACTCAACAACAA 1558
Query 1533 TTGGGATATTGATGTTTTGATTTTATTTAAATCTGTAACAAAATAAATATATCTTTCTTA 1592
||| ||||||||||||||||||||||| |||||||||||||||||||||| | | || |
Sbjct 1559 TTGTGATATTGATGTTTTGATTTTATTAAAATCTGTAACAAAATAAATAT-T-T--CT-A 1613
Query 1593 TCTAAA-TGAAAATTCTAATGTTGTTTTCCT 1622
|||||| ||||||| ||||||||||||||||
Sbjct 1614 TCTAAAATGAAAATACTAATGTTGTTTTCCT 1644
> AT2G45685.1 | Symbols: | other RNA | chr2:18820691-18822184
FORWARD LENGTH=1494
Length=1494
Score = 1892 bits (1024), Expect = 0.0
Identities = 1141/1198 (95%), Gaps = 5/1198 (0%)
Strand=Plus/Minus
Query 1 GACGTGAAACGCCGTTAAAACTATTCTTTCCCATTGTATCCGCTTTTAACAACTCTAGTC 60
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1195 GACGTGTAACGCCGTTAAAACGATTCTTTCCCATTGTATCCGCTTTTAACAACTCTCGTC 1136
Query 61 GTCATCTCCACCGTCCGTTTTCTCTCAGCTATATTTTAATGGCGACGATTCAGAAGCAAG 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1135 GTCATCTCCACCGTCCGTTTTCTCTCAGCTATATTTTAATGGCGACAATTCAGAAGCTTG 1076
Query 121 AAGAAGTTGGAGGCAAAGATCAAAGC-CTAAGAGCCATTGATCTAACCATCATCAACGGC 179
||||||||| |||||||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct 1075 AAGAAGTTGCAGGCAAAGATCAAA-CTCTAAGAGCCGTTGATCTAACCATCATCAACGGC 1017
Query 180 GTCAGAAACGTCGAAACTTCAAGACCTTTCCAAGTAAATCCCACAGTGAGTCTCGAGCCT 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GTCAGAAACGTCGAAACTTCAAGACCTTTCCAAGTAAATCCCACAGTGAGTCTCGAGCCC 957
Query 240 AAGGCGGAGCCGGTGATGCCGTCGATTTCAATGTCTTTAGCTCCACCGTCTTCAACGGGA 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 956 AAGGCGGAGCCGGTGATGCCGTCGTTTTCAATGTCTTTAGCTCCACCGTCTTCGACAGGA 897
Query 300 CCACCATTGAAGAGAGCTTCGACTAAAGACCGTCACACGAAGGTTGAAGGAAGAGGGAGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CCACCATTGAAGAGAGCTTCGACTAAAGACCGTCACACGAAGGTTGAAGGAAGAGGGAGA 837
Query 360 AGGATACGGATGCCTGCCACGTGTGCGGCTAGGATTTTTCAACTAACTCGAGAGTTAGGT 419
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 836 AGGATACGGATGCCTGCCACGTGTGCGGCTAGGATTTTTCAATTAACTCGAGAGTTAGGT 777
Query 420 CACAAATCCGACGGCGAAACGATTCGGTGGTTGTTGGAGAACGCTGAGCCGGCGATTATC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CACAAATCCGACGGCGAAACGATTCGGTGGTTGTTGGAGAACGCTGAGCCGGCGATTATA 717
Query 480 GCCGCCACGGGAACGGGAACGGTTCCCGCCATCGCTATGTCGGTTAACGGAACCCTAAAA 539
||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 716 GCCGCCACGGGTACGGGAACGGTTCCCGCCATCGCCATGTCGGTTAACGGAACCTTAAAA 657
Query 540 ATCCCGACGACAACGAACGCTGATTCTGATTTGGGTGAAAATCCGATGAAGAAGAAACGT 599
||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 656 ATCCCGACGACGACGAACGCTGATTCTGATATGGGTGAAAATCTGATGAAGAAGAAACGT 597
Query 600 AAACGACCTTCTAACAGTGAGTATATAGACATAAGCGACGCCGTTTCGGCTTCCTCCGGT 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 596 AAACGACCTTCTAACAGTGAGTATATAGACATAAGCGACGCCGTTTCAGCTTCCTCCGGT 537
Query 660 TTAGCTCCCGTTTCCACGACGACAACGACCCAACCGCCGCAAGCTCTGGCATCATCCACC 719
|||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 536 TTAGCTCCAATTGCCACGACGACAACGATCCAACCTCCGCAAGCTCTGGCATCATCCACT 477
Query 720 GTGGCTCAGCAACTTCTGCCGCAAGGAATGTATCCGATGTGGGCTATTCCATCAAACGCA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GTGGCTCAGCAACTTCTGCCGCAAGGAATGTATCCGATGTGGGCTATTCCATCAAACGCA 417
Query 780 GTGATTCCGACGGTCGGAGCTTTCTTCTTGGTTCCACAAATCACTGGTCCGTCGAATCAG 839
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 416 ATGATTCCGACGGTCGGAGCTTTCTTCTTGATTCCACAAATCGCTGGTCCGTCGAATCAG 357
Query 840 CCTCAGTTATTAGCTTTTCCGGCCGCGGCCCCGTCGCCGTCGTCTTACGTCGCCGCTGTT 899
|||||||||||||||||||| ||||| || | |||||||||||||||||||||||||||
Sbjct 356 CCTCAGTTATTAGCTTTTCCCGCCGCCGCTGCTTCGCCGTCGTCTTACGTCGCCGCTGTT 297
Query 900 CAGCAGGCTTCCTCGATGGCTAGACCACCTCCTCTT-CAAGTTGTTCCAAGCAGCGGCTT 958
|| ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 296 CAACAGGCTTCCACGATGGCTAGACCACCTCCT-TTACAAGTTGTTCCAAGCAGCGGCTT 238
Query 959 TGTATCCGTTTCAGACGTTAGCGGTTCAAATTTATCAAGAACGACGTCGGTTATGGCTCC 1018
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 237 TGTATCCGTTTCAGACGTTAGCGGTTCGAATTTATCAAGAGCGACGTCGGTTATGGCTCC 178
Query 1019 GAGCTCAAGCTCCGGCATAACAATCAGTGGTTCATCGTCTACTGCAACAACAACGACACA 1078
|||||||||||| ||| |||||| | || |||||||||| | ||||||||||||||| ||
Sbjct 177 GAGCTCAAGCTCAGGCGTAACAACCGGTAGTTCATCGTCAATTGCAACAACAACGACGCA 118
Query 1079 CACGCTCAGAGACTTCTCGCTAGAGATATACGAGAAACAAGAGCTTCACCAGTTCATGAG 1138
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CACGCTGAGAGACTTCTCCCTAGAGATATACGAGAAACAAGAGCTTCACCAGTTCATGAG 58
Query 1139 CACCACAACAACACGGTCATCGAACCACTGAAGAAAAGAAAGCAAAGCGACGGCGTAT 1196
|||||||||| ||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct 57 CACCACAACAGCACGGTCATCGAACCACTGAAGAAAAGAAAGGAAA-CGGCGGCGTAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80120069820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5