BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483715
Length=1385
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45770.2 | Symbols: CPFTSY | signal recognition particle rec... 1748 0.0
> AT2G45770.2 | Symbols: CPFTSY | signal recognition particle receptor
protein, chloroplast (FTSY) | chr2:18851216-18853424
FORWARD LENGTH=1176
Length=1176
Score = 1748 bits (946), Expect = 0.0
Identities = 1081/1143 (95%), Gaps = 21/1143 (2%)
Strand=Plus/Plus
Query 1 GCCATGGCAACTTCTTCTGCTCACCTCTCGTTTCTCGCCGGACGGATGTCTCCGTTCTCC 60
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 30 GCCATGGCAACTTCTTCTGCTCACCTCTCGTTTCTCGCCGGACGTATATCGCCGTTCTCC 89
Query 61 TCCGAACGGATCGTATTATCCCCACAAAGAGGTGAATTTCGTCCACCAATGTCCCGGTTC 120
||||||||||||| ||||| || | ||||| ||||||||||||| |||| ||||||||
Sbjct 90 TCCGAACGGATCGGATTATTTCCTCTCAGAGGAGAATTTCGTCCACGAATGACCCGGTTC 149
Query 121 CGGTGCTCGGCCGGACCGAGCGGATTCTTCACGCGGCTGGGTCGGTTGATTAAGGAGAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 CGGTGCTCGGCCGGACCGAGCGGATTCTTCACGCGGCTGGGTCGGTTGATTAAGGAGAAG 209
Query 181 GCCAAAAGCGACGTGGAGAAGGTTTTCTCCGGATTCTCTAAGACTAGAGAAAATCTAGCA 240
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 210 GCCAAAAGCGACGTGGAGAAAGTTTTCTCCGGATTCTCTAAGACTAGGGAAAATCTAGCA 269
Query 241 GTCATCGACGAGCTCTTGCTCTTCTGGAATCTTTCTGAAACAGACCGAGTTCTCGATGAA 300
||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 270 GTCATCGACGAGCTCTTACTCTTCTGGAATCTTGCTGAAACAGACCGAGTTCTTGATGAA 329
Query 301 TTGGAAGAGGCGCTATTGGTTTCTGATTTTGGACCCAAGATTACTGTTAGAATTGTTGAG 360
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 330 TTGGAAGAGGCGCTTTTGGTTTCTGATTTTGGACCGAAGATTACTGTTAGAATTGTGGAG 389
Query 361 AGGCTAAGAGAGGATATCATGTCAGGGAAACTCAAATCAGGAAGCGAGATTAAGGATGCA 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 390 AGGCTAAGAGAGGATATCATGTCAGGAAAACTCAAATCAGGAAGCGAGATTAAGGATGCA 449
Query 421 TTGAAGGGAAGCGTGTTGGAGATGCTCGCTAAGAAAAACAGCAAGACAGAGCTTCAATTG 480
||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 450 TTGAAGGAAAGTGTGTTGGAGATGCTGGCTAAGAAAAACAGCAAGACAGAGCTTCAATTG 509
Query 481 GGTTTTAGGAAACCAGCTGTTATAATGATTGTTGGAGTCAACGGAGGTGGGAAGAC--CA 538
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 510 GGTTTTAGGAAACCAGCTGTTATAATGATTGTTGGAGTGAACGGAGGTGGGAAGACGACA 569
Query 539 ---C---A-TCT--C--------TT--GGAAAGTTGGCTCATAGATTGAAGAATGAAGGA 579
| | ||| | || |||||| |||||||||||||||| |||||||||
Sbjct 570 TCTCTTGATTCTGGCTTTTGTTTTTCAGGAAAGCTGGCTCATAGATTGAAAAATGAAGGA 629
Query 580 ACTAAGGTATTAATGGCAGCAGGTGATACATTTAGAGCAGCAGCAAGTGACCAGTTAGAG 639
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 630 ACTAAGGTATTAATGGCAGCAGGTGATACATTTAGAGCAGCAGCAAGTGACCAATTAGAG 689
Query 640 ATATGGGCAGAGAGGACTGGGTGTGAGATTGTTGTGGCTGAAGGAGAGAAGGCTAAAGCA 699
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 690 ATATGGGCAGAGAGGACTGGGTGTGAGATTGTTGTGGCTGAAGGAGACAAGGCTAAAGCA 749
Query 700 GCAACAGTTCTCTCAAAGGCTGTTAAAAGGGGGAAGGAGGAAGGCTATGATGTTGTACTG 759
|| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 750 GCCACGGTTCTCTCAAAGGCTGTGAAAAGGGGGAAGGAGGAAGGTTATGATGTTGTACTG 809
Query 760 TGTGACACATCTGGACGTCTTCATACTAATTACAGTTTGATGGAGGAGTTGATTGCGTGC 819
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 810 TGCGACACATCTGGACGTCTCCATACTAATTACAGTTTGATGGAGGAGTTGATTGCGTGC 869
Query 820 AAAAAAGCAGTGGGCAAGATTGTCTCTGGTGCACCTAATGAGATCCTACTTGTCCTTGAT 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 AAAAAAGCAGTGGGCAAGATTGTCTCTGGTGCACCTAATGAGATCCTACTTGTCCTTGAT 929
Query 880 GGAAACACTGGTTTGAACATGCTTCCGCAAGCTAGAGAATTCAACGAGGTTGTTGGTATT 939
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 930 GGAAACACTGGTTTGAACATGCTTCCACAAGCTAGAGAATTCAACGAGGTTGTTGGTATC 989
Query 940 ACCGGTTTGATATTGACGAAACTAGATGGCTCTGCTAGAGGAGGTTGTGTGGTCAGTGTG 999
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 990 ACCGGTTTGATATTGACGAAACTAGATGGCTCTGCTAGAGGAGGCTGTGTGGTCAGTGTG 1049
Query 1000 GTTGAGGAATTGGGCATTCCCGTAAAGTTTATCGGAGTAGGAGAAGCTGTAGAAGATCTC 1059
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1050 GTTGAGGAATTGGGCATTCCCGTAAAGTTTATCGGTGTAGGAGAAGCTGTAGAAGATCTC 1109
Query 1060 CAACCTTTTGATCCGGAGGCTTTTGTGAATGCTATATTCTCCTAAACCATAAAACCTCGT 1119
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1110 CAACCTTTTGATCCGGAGGCTTTTGTGAATGCTATATTCTCTTAAGCCATAAAACCTCGT 1169
Query 1120 CTT 1122
|||
Sbjct 1170 CTT 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68222540655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5