BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483720
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45820.1 | Symbols: | Remorin family protein | chr2:1886295... 1288 0.0
> AT2G45820.1 | Symbols: | Remorin family protein | chr2:18862953-18864691
REVERSE LENGTH=882
Length=882
Score = 1288 bits (697), Expect = 0.0
Identities = 841/904 (93%), Gaps = 35/904 (4%)
Strand=Plus/Plus
Query 1 ATAAGCTAACGGAGGATATAAAAACTCTTT-TCTCATTATT-TCCCTAAAATCTCAATTT 58
|||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 1 ATAAGCTAACGGAGGATATAAAAACTCTTTAACTCATTATTGT-CCTAAAATCTCAATTT 59
Query 59 TATCCGGTTGTTTTATTTTCTAAGGaaaaaa-aTTAAAATCTGTTCTTCTTCTTCGGCTG 117
||||| |||||| | |||||||| | ||||||||||||||||||||||||||
Sbjct 60 TATCC---------ATTTTC-ACGGAAAAAACA-TAAAATCTGTTCTTCTTCTTCGGCTG 108
Query 118 AGAGACAATGGCGGAGGAGCAAAAGACGAGTAAGGCTGACGTAGAATCTCCGGCGGTTTT 177
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 109 AGAGACAATGGCGGAGGAGCAAAAGACGAGTAAGGTTGACGTAGAATCTCCGGCTGTTTT 168
Query 178 AGCTCCGGC-AACGGAACCGACTCCTGCTCCGGTGGAAGTCGCGGATGAGAAAATTCATA 236
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 AGCTCCGGCGAA-GGAACCGACTCCTGCTCCGGTGGAAGTCGCGGATGAGAAAATTCATA 227
Query 237 ATCCACCTCCCGTCGAGTCCAAAGCTCTGGCCGTTGTAGAAAAACCCATCGAGGAGCATA 296
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 228 ATCCACCTCCCGTCGAGTCCAAAGCTCTTGCCGTTGTAGAAAAACCCATCGAGGAGCATA 287
Query 297 CACCGAAGAAAACTTCGTCTGGTTCGGCCGATAGAGATGTGATACTTGCCGACTTGGAAA 356
|||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 CACCTAAGAAAGCTTCATCTGGTTCGGCCGATAGAGATGTGATACTTGCCGACTTGGAAA 347
Query 357 AGGAGAAGAAAACGTCATTCATCAAAGCATGGGAAGAGAGTGAGAAGTCAAAGGCTGAGA 416
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 AAGAGAAGAAAACGTCATTCATCAAAGCATGGGAAGAGAGTGAGAAGTCAAAGGCTGAGA 407
Query 417 ATAGGGCACAAAAGAAGATCTCTGATGTGCATGCTTGGGAGAATACCAAGAAAGCAGCCG 476
| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 408 ACAGGGCACAAAAGAAGATCTCTGATGTGCATGCTTGGGAAAATAGCAAGAAAGCAGCCG 467
Query 477 TAGAAGCTCAACTCAGGAAGATCGAAGAAAAACTAGAGAAGCAAAAAGCACAGTATGGTG 536
||||||||||||| ||||||||||| |||||| |||||||| ||||||| ||||| ||||
Sbjct 468 TAGAAGCTCAACTTAGGAAGATCGAGGAAAAATTAGAGAAGAAAAAAGCGCAGTACGGTG 527
Query 537 AGAAAATGAAGAACAAAGTAGCTGCAATCCACAAGTTAGCAGAAGAGAAGAGAGCAATGG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 AGAAAATGAAGAACAAAGTAGCTGCAATCCACAAGTTAGCAGAAGAGAAGAGAGCAATGG 587
Query 597 TTGAAGCTAAGAAAGGAGAAGAGCTTCTCAAAGCTGAAGAAATGGGTGCTAAGTATAGAG 656
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 TTGAAGCTAAAAAAGGAGAAGAGCTTCTCAAAGCTGAAGAAATGGGTGCTAAGTATAGAG 647
Query 657 CCACTGGTGTAGTACCAAAGGCAACTTGTGGATGTTTCTAAGTCTTTATTGAATTTGTTT 716
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 648 CCACTGGTGTAGTACCAAAGGCAACGTGTGGATGTTTCTAAGCCTTTATTGAATTTGT-- 705
Query 717 CTCAGGTCTATGTTTGTAAACAATTCATCTCTGTTTCTTTCTTCtttttttttttttttg 776
| ||| | | |||| |||||||||||||||||||||||||| |||| ||||| |
Sbjct 706 ---A--TCT-T-T--GTAA-CAATTCATCTCTGTTTCTTTCTTCTTCTTTTGTTTTT--G 753
Query 777 tgtgattcaacaact-ttttatagtttttggttatttgtttggttgtttgtgtcttgttt 835
||||||||||||||| |||| ||||||||| ||||||||||||| |||||||||||||||
Sbjct 754 TGTGATTCAACAACTCTTTT-TAGTTTTTG-TTATTTGTTTGGTCGTTTGTGTCTTGTTT 811
Query 836 acatattgggtgcttttgtgtAAAAGTGAAAGATTTTATGGAGTATAATTCTATGAAGCA 895
|||||||||||| || ||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 812 ACATATTGGGTGATTGTGTGTAAAAGTGAAAGATTA-ATGGAGTATAATTGTATGAAGCA 870
Query 896 TCAA 899
||||
Sbjct 871 TCAA 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43904644478
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5