BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483725 Length=1712 Score E Sequences producing significant alignments: (Bits) Value AT2G45850.1 | Symbols: | AT hook motif DNA-binding family prot... 2196 0.0 AT3G61310.1 | Symbols: | AT hook motif DNA-binding family prot... 99.0 1e-19 > AT2G45850.1 | Symbols: | AT hook motif DNA-binding family protein | chr2:18871479-18873972 REVERSE LENGTH=1886 Length=1886 Score = 2196 bits (1189), Expect = 0.0 Identities = 1558/1717 (91%), Gaps = 102/1717 (6%) Strand=Plus/Plus Query 1 CATTAGGATTTTGAATTTCCAAATACATTTTCAGAAAAAAGAGAACTAAAAGATCCCATT 60 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 1 CATTAGGATTTTGAATTTCCAAATACATTTTCAGAAAAAAAAGAATTAAAAGATCCCATT 60 Query 61 GTTGTTATCCTCACAGTAAATGCTTTTGCTTGAGAGAG-GTTCTGTTAGAGGTTTTTTGT 119 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 61 GTTGTTATCCTCACAGTAAATGCTTTTGCTTGAGAGAGAG-TCTGTTAGAGGTTTTTTGT 119 Query 120 TTGCTTCTGTTTCCTTCTGTCACCCAGAAAAC--AAAA--AAGCAAATTC----A-AGA- 169 ||| |||||||||||||||||||||||||||| |||| || ||||||| | ||| Sbjct 120 TTGTTTCTGTTTCCTTCTGTCACCCAGAAAACTAAAAAGCAAACAAATTCAAGAAGAGAG 179 Query 170 AGAGAGAGAGATAG---C---ACTAA-----AACCATTGTT-ATAGAAGAGAAAGCTTTT 217 |||||||||||||| | || || |||||||||| |||||||||||||||||| Sbjct 180 AGAGAGAGAGATAGCCTCAAAACCAAGTCCTAACCATTGTTGATAGAAGAGAAAGCTTTT 239 Query 218 C-TTTCTTGTTGCTTATGGTGAAAGAATG-AA-AGAGAGA-GAGGAGAAGTAAGAAGCTG 273 | ||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| | Sbjct 240 CTTTTCTTGTTGCTTATGGTGAAAGAATGAAAGAGAGAGAGGAGGAGAAGTAAGAAGCAG 299 Query 274 AGAAAGTGTTTAGAGCTTTGCATGTTCCTTTCTCGCCAAGTTTATATCTTCATCTGTTCC 333 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | Sbjct 300 AGAAAGTGTTTAGAGCTTTGCATGTTCCTTTCTCTCCAAGTTTATATCTTCATCGGTTTC 359 Query 334 ACAATTTCACTT----A----AAAAGAGTC--T-TTCTTCAACTACTGTAAATGCAAAAT 382 |||| ||||||| | ||||||||| | ||||||||||| ||||||||| |||| Sbjct 360 ACAAGTTCACTTAAAAAGTTGAAAAGAGTCTTTCTTCTTCAACTATTGTAAATGCGAAAT 419 Query 383 GGATCGAAGAGATGCAATGGGATTATCCGGGTCGGGTTCTTACTATATCCATAGAGGATT 442 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 420 GGATCGAAGAGATGCAATGGGATTATCCGGGTCAGGTTCTTACTATATCCATAGAGGATT 479 Query 443 ATCCGGGTCGGGTCCTCCAACGTTTCACGGATCATCACAG---CAGCAAGGGCTTCGTCA 499 ||||||||||||||||||||||||||| |||||| ||||| |||||||| |||||||| Sbjct 480 ATCCGGGTCGGGTCCTCCAACGTTTCATGGATCACCACAGCAACAGCAAGGTCTTCGTCA 539 Query 500 CTTACCTAATCAAAACTCTCCATTCGGGCCAGGCTCCACTGGTTTCGGA------TC--T 551 |||||||||||||||||||||||||||| |||||||||||||||||||| || | Sbjct 540 CTTACCTAATCAAAACTCTCCATTCGGGTCAGGCTCCACTGGTTTCGGATCTCCTTCTTT 599 Query 552 -C-C--T--T-C-TC-C-GGCAACTGCGGCCGGAGGAGCCGGAGCTCTTCCTCATCATAT 601 | | | | | || | |||||| || |||||||||||||||||||||||||||||||| Sbjct 600 ACACGGTGATCCTTCTCTGGCAACAGCAGCCGGAGGAGCCGGAGCTCTTCCTCATCATAT 659 Query 602 CGGCGTTAATATGATTGCTCCTCCGCCACCTCCTAGTGAAACTCCGATGAAACGAAAGAG 661 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 660 CGGCGTTAATATGATTGCTCCTCCTCCACCTCCCAGTGAAACTCCGATGAAACGAAAGAG 719 Query 662 AGGACGTCCTAGAAAATACGGACAAGACGGTC-CTGTTTCTTTGGCACTGTCGTCTTCCT 720 |||||| |||||||||||||| |||||||| | ||||||||||||| ||||||||||||| Sbjct 720 AGGACGGCCTAGAAAATACGGTCAAGACGG-CTCTGTTTCTTTGGCTCTGTCGTCTTCCT 778 Query 721 CTGTTTCGACCATTACTCCCAACAACTCTAACAAACGCGGCCGTGGTCGACCTCCGGGTT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 779 CTGTTTCGACCATTACTCCCAACAACTCTAACAAACGCGGCCGTGGTCGACCTCCGGGCT 838 Query 781 CCGGCAAGAAACAGAGAATGGCTTCCATTGGTGAATTGATGCCTTCATCTTCTGGAATGA 840 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 839 CCGGCAAGAAACAGAGAATGGCTTCCGTTGGTGAACTGATGCCTTCATCTTCTGGAATGA 898 Query 841 GCTTCACGCCACACGTTATCGCGGTTTCAATAGGAGAAGATATTGCATCAAAGGTTATAT 900 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 GCTTCACGCCACATGTTATCGCGGTTTCAATAGGAGAAGATATTGCATCAAAGGTTATAG 958 Query 901 CTTTCTCTCAACAAGGTCCAAGAGCCATTTGCGTTTTATCTGCAAGTGGTGCAGTCTCTA 960 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 959 CTTTCTCTCAACAAGGTCCGAGAGCCATTTGCGTTTTATCTGCAAGTGGTGCAGTCTCTA 1018 Query 961 CTGCAACACTTCTTCAACCATCAG---CTCCCGGAGCTATTAAATACGAGGGCCGGTTTG 1017 ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 1019 CTGCAACACTTATTCAACCATCAGCATCTCCCGGAGCCATTAAATACGAGGGCCGGTTTG 1078 Query 1018 AAATCCTAGCGTTATCAACATCTTATCTAGTGGCAACTGATGGAAGCTTCCGTAATCGAA 1077 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 1079 AAATCCTAGCGTTATCAACATCTTATATAGTGGCAACTGATGGAAGCTTCCGTAACCGAA 1138 Query 1078 CTGGAAACTTATCGGTTTCTCTTGCTAGCCCCGATGGGCGTGTGATTGGTGGTGCCATTG 1137 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1139 CTGGAAACTTATCGGTTTCGCTTGCTAGCCCCGATGGGCGTGTGATTGGCGGTGCCATTG 1198 Query 1138 GTGGGCCTTTAATAGCAGCAAGTCCTGTTCAGGTTATAATAGGGAGCTTTATATGGGCAG 1197 |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1199 GTGGGCCTTTAATAGCTGCAAGTCCTGTTCAGGTTATTGTAGGGAGCTTTATATGGGCAG 1258 Query 1198 CTCCAAAGATCAAGAGCAAGAAACGAGAAGAAGATGCTTCTGAAGTTGTTCAAGACACTG 1257 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1259 CTCCAAAGATCAAGAGCAAGAAACGAGAAGAAGAAGCTTCTGAAGTTGTTCAAGAAACTG 1318 Query 1258 ATGATCATCACGTTCTGGACAATAATAACAACACGATTTCGCCTGTCCCTCAGCAGCAGC 1317 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 ATGATCACCACGTTCTGGACAATAATAACAACACGATTTCGCCTGTCCCTCAGCAGCAGC 1378 Query 1318 CAAGCCAAAACCTGATATGGTCAACAGGTTCAAGGCAAATGGATATGCGTCATGCTCATG 1377 ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1379 CAAACCAAAACCTGATTTGGTCAACAGGTTCAAGGCAAATGGATATGCGTCATGCTCATG 1438 Query 1378 CTGATATTGATTTAATGCGCGGTTGATGATGATGATGATAGCGGGAAAGAACTCTGTGTA 1437 |||||||||||||||||||| | | | ||||||||||| |||||||||||||||| Sbjct 1439 CTGATATTGATTTAATGCGC----G--G-T--TGATGATAGCGAGAAAGAACTCTGTGTA 1489 Query 1438 TATAAAGCATGGAATCTAGGAAGAAGAAGAAGGAATATAAGCTAA-C-CT---C------ 1486 ||||||||||||||||||||||||||||||||||||||||||||| | || | Sbjct 1490 TATAAAGCATGGAATCTAGGAAGAAGAAGAAGGAATATAAGCTAACCTCTGAACAAAAGT 1549 Query 1487 ---T-G--A----A---CAAAAG--TATGTGGAAATGTTAGGCAAAAAGATTGACTCTAT 1531 | | | | ||||| ||||||||||||||||| ||||||||| ||||||| Sbjct 1550 ATGTGGAAATGTTAGGGAAAAAGATTATGTGGAAATGTTAGGGAAAAAGATTAACTCTAT 1609 Query 1532 TAGTGTACCTCTCAAATCTATAAGCTTATTTGGTTTTGTTGTTT-TAGTGACTCTGAAGA 1590 |||||||||||||| |||| ||||||| ||||||||| ||||| | ||||||||||||| Sbjct 1610 TAGTGTACCTCTCATATCTCTAAGCTTGTTTGGTTTTACTGTTTCT-GTGACTCTGAAGA 1668 Query 1591 TTTGCAGAGTTCCTTGATTTCTCTATTTCAGATTGTT 1627 ||||||||||||||| ||||||| ||| |||||||| Sbjct 1669 TTTGCAGAGTTCCTTTCTTTCTCTGTTTTAGATTGTT 1705 > AT3G61310.1 | Symbols: | AT hook motif DNA-binding family protein | chr3:22690596-22692834 REVERSE LENGTH=1657 Length=1657 Score = 99.0 bits (53), Expect = 1e-19 Identities = 72/81 (89%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 381 ATGGATCGAAGAGATGCAATGG-GATTATCCGGGTCGGGTTCTTACTATATCCATAGAGG 439 |||||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||| Sbjct 390 ATGGATCGAAGAGACGCAATGGCG-TTATCCGGGTCGGGTTCTTACTATATCCAAAGAGG 448 Query 440 ATTATCCGGGTCGGGTCCTCC 460 | | |||| || |||||||| Sbjct 449 AATCCCCGGTTCTGGTCCTCC 469 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84638118870 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5