BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483731
Length=3055
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45910.1 | Symbols: | U-box domain-containing protein kinas... 4763 0.0
> AT2G45910.1 | Symbols: | U-box domain-containing protein kinase
family protein | chr2:18894074-18898528 FORWARD LENGTH=3148
Length=3148
Score = 4763 bits (2579), Expect = 0.0
Identities = 2866/3002 (95%), Gaps = 29/3002 (1%)
Strand=Plus/Plus
Query 61 TTCTTGCCGTGAGTTTTGGTTGGTCTGACCAAGAGTCGTTTTATTTGGTCAATACGTTTC 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 112 TTCTTGCCGTGAGTTTTGGTTGGTCTGACCAAGAGTCCTTTTATTTGGTCAATACGTTTC 171
Query 121 GAAA-TTGAT-ATCAAACtctttcttcttcttcttcttcttcCGTATCCTTAGACTCTAG 178
|||| ||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 172 GAAATTTGATAATCAAACTCTTTCTTCCTCTTCTTCTTCTTCCTTATCCGTAGACTCTAG 231
Query 179 GGTTTCACTACGATTCGAGTGTTTCTAGTATTTG-T-T-TGGT-TGTTGTGTGGTTTTAG 234
||||||| |||||||||||||| ||| | |||| | | | || | | | |
Sbjct 232 GGTTTCAATACGATTCGAGTGTGTCT-G--TTTGCTCTCTAGTCAAAAATTTCACTCT-- 286
Query 235 GA-ATCAAACGATCTGGTTTTTCGGATTTGGTATTGGAGCAATGGCTTTGGTGACTCCAA 293
|| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct 287 GATATCAAACGATCTGGTTTGTCGGATTTGATATTGGAGCAATGGCTTTGGTGAGTCCAA 346
Query 294 TTCCAGCAATGGGTGAAAGAGCTGGATCCATGAGATTTCACGGAATTGGTAGCCCAGGAT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 TTCCAGCAATGGGTGAAAGAGCTGGATCCATGAGATTTCACGGAATTGGTAGCCCAGGAT 406
Query 354 CAAGGTCTAGTAGGAGCGGGATTATGGACGAACCTGTTTCGCGCCTGATTGACGAGAAAA 413
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 407 CAAGGTCTAGTAGGAGCGGGATTATGGACGAACCTGTCTCGCGGCTGATTGACGAGAAGA 466
Query 414 TCTTCGTTGCTGTGGATAAGCACGTGGCCAAGAGCAAGTCTACACTCATTTGGGCTTTGC 473
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 467 TCTTCGTTGCAGTGGATAAACACGTGGCCAAGAGCAAATCTACACTCATTTGGGCTTTGC 526
Query 474 AAAACACTGGCGGCAAGAAGATTTGCCTTATTCATGTTCATCAGCCCTCCCAAATGATTC 533
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 527 AAAACACTGGAGGCAAGAAGATTTGCCTTATTCATGTTCATCAGCCCTCCCAAATGATCC 586
Query 534 CACTTATGGGCGCCAAATTTCCAGTTGGTGCTGTGAAGGAGGAAGAAGTCAGGGCTTTCA 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 587 CACTTATGGGCGCCAAATTTCCAGTTGGTGCTGTGAAGGAGGAAGAAGTCAGGGTTTTCA 646
Query 594 GGGAAAAAGAAAGGGAGAAAGTGCATATGATCTTAGACGACTACCTTCGTATATGCCAGC 653
||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 647 GGGAAAAGGAAAGGGAGAAAGTACATATGATCCTAGACGACTACCTTCGTATATGCCAGC 706
Query 654 AGAGAGGGGTCAGGGCAGAAAAGATGTTTATTGAAATGGAGTCCATCGAGAATGGAATTG 713
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 707 AGAGAGGGGTCAGGGCAGAAAAGATGTTTATTGAAATGGAATCCATCGAGAATGGAATTG 766
Query 714 TGCAGCTGATCTCAGAGCTGGGAATCAGGAAGCTTGTCATGGGAGCAGCAGCAGATAGAC 773
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 767 TGCAGCTCATCTCGGAGCTGGGAATCAGGAAACTTGTCATGGGAGCAGCAGCAGATAGAC 826
Query 774 ACTATTCAAGGAGAATGACGGATCTGAAGTCCAGGAAAGCCATCTTTGTACGCCGAGAAG 833
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 827 ACTATTCAAGGAGAATGACGGATCTGAAGTCCAGGAAAGCCATCTTCGTACGCCGAGAAG 886
Query 834 CACCTAGTCTTTGTCAAATATGGTTTACTTGCAAAGGATACTTGATACATACAAGGGAAG 893
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 CACCTACTCTTTGTCAAATATGGTTTACTTGCAAAGGATACTTGATACATACAAGGGAAG 946
Query 894 CTACGATGGACGACACTGAATCAGAATATGCATCTCCGCGTCCTTCCATAAGTGCAAGTG 953
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 CTACTATGGACGACACTGAATCAGAATATGCATCTCCGCGTCCTTCCATAAGTGCAAGTG 1006
Query 954 ATCTACTTCAAACTTTCTCTACACCGGAGTCTGAACATCAGCATATATCTCGAGTACAGA 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 ATCTACTTCAAACTTTCTCTACACCGGAGTCTGAACATCAGCATATATCTCGAGTACAGA 1066
Query 1014 GCACCGATTCAGTTCAACATTTAGTAAGCAATGGAAGTTCAACTGAACACAGCGGGAGGG 1073
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1067 GCACCGATTCAGTTCAACAATTAGTAAGCAATGGAAGCTCAACTGAACAAAGCGGGAGGG 1126
Query 1074 TGTCAGATGGGTCTTTAAATACTGATGAGGAGGAGAGAGAATCTGGTGGCAGTGAAGTAA 1133
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1127 TGTCGGATGGGTCTTTAAATACTGATGAGGAGGAGAGAGAATCTGATGGCAGTGAAGTAA 1186
Query 1134 CGGGAAGTGCAACAGTTATGAGTTCTGGCCATTCATCTCCCTCCAATTTTCCGGATGGGG 1193
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1187 CGGGAAGTGCAACAGTTATGAGTTCTGGCCATTCATCTCCCTCCAGTTTTCCGGATGGGG 1246
Query 1194 TGGATGATTCATTCAACGATAAAATTCGAAAAGCCACGTCAGAGGCTCACAGTTCAAAAC 1253
|||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1247 TGGATGATTCTTTTAACGTTAAAATCCGAAAAGCCACGTCAGAGGCTCACAGTTCAAAAC 1306
Query 1254 AAGAAGCTTTTGCAGAGACTCTTAGGCGACAGAAAGCCGaaaaaaaCGCACTTGATGCAA 1313
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1307 AAGAAGCTTTTGCAGAGACTCTTAGGCGTCAGAAAGCCGAAAAAAACGCACTTGATGCAA 1366
Query 1314 TCAGAAGGGCTAAACAATCAGAAAGTGCATATTCTGAGGAGTTGAAGCGAAGGAAAGATA 1373
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1367 TCAGAAGGGCTAAACAATCAGAAAGTGCCTATTCTGAGGAATTGAAGCGAAGGAAAGATA 1426
Query 1374 CGGAGATAGCAGTAGCGAAAGAGAAAGAGAGATTTATAACAATAAAAAACGAGCAAGAGG 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 CGGAGATAGCAGTAGCGAAAGAGAAAGAGAGATTTATAACAATAAAAAACGAGCAAGAGG 1486
Query 1434 TAATCATGGAAGAACTTCAAAGTGCAATGGATCAGAAAGCGATGCTTGAGAGCCAAATAG 1493
| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1487 TGATCATGGAAGAACTTCAAAGTGCAATGGCTCAGAAAGCGATGCTTGAGAGCCAGATAG 1546
Query 1494 CAGAATCCGATGGTACAATGGAAAAGCTAAACCAGAAGCTTGATATAGCTGTGAAGTTGT 1553
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 CAAAATCTGATGGTACAATGGAAAAGCTAAACCAGAAGCTTGATATAGCTGTGAAGTTGT 1606
Query 1554 TGCAAAAGTTGAGGGATGAACGAGAGGAGTTGCAGACAGAACGTGACAGGGCACTCAGAG 1613
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1607 TGCAAAAGTTGAGGGATGAACGAGAGGAGTTGCAGACAGAACGTGACAGAGCACTCAGAG 1666
Query 1614 AAGCTGAGGAGTTAAGGAGTCGCGCAGAAACCTCAACCCTACAGTTACCTCAGTACTTCA 1673
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1667 AAGCTGAGGAGTTAAGGAGTCACGCAGAAACCTCAACCCTACAGTTGCCTCAGTACTTCA 1726
Query 1674 CGGATTTCTCATTCTCAGAGATTGAGGAAGCAACTAATCACTTTGATTCGACCCTGAAGA 1733
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 CGGATTTCTCATTCTCCGAGATTGAGGAAGCAACTAATCACTTTGATTCGACCCTGAAGA 1786
Query 1734 TTGGGGAAGGTGGATATGGAAGCATCTACATTGGTTTACTGCGTCATACTCAGGTGGCTA 1793
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1787 TTGGGGAAGGTGGATATGGAAGCATCTACGTTGGTTTACTGCGTCATACTCAGGTGGCTA 1846
Query 1794 TAAAAATGTTGAATCCTAACAGTTCGCAAGGCCCTGTAGAATATCAACAGGAGGTTGATG 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 TAAAAATGTTGAATCCTAACAGTTCGCAAGGCCCTGTAGAATATCAACAGGAGGTTGATG 1906
Query 1854 TGCTAAGTAAAATGAGGCATCCAAATATAATTACGCTAATTGGAGCATGTCCAGAGGGGT 1913
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1907 TCCTAAGTAAAATGAGGCATCCAAATATCATTACGCTAATTGGAGCATGTCCAGAGGGGT 1966
Query 1914 GGAGTCTTGTCTATGAGTATCTTCCGGATGGAAGCCTTGAAGACAGGCTTAATTGCAAGG 1973
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
Sbjct 1967 GGAGTCTTGTCTATGAGTATCTTCCGGGTGGAAGCCTTGAAGACAGGCTTACTTGCAAAG 2026
Query 1974 AGAACTCTCCACCCTTGTCGTGGCAAAATCGTGTACGCATTGCCACTGAGATATGCGCAG 2033
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2027 ACAACTCTCCACCCTTGTCGTGGCAAAATCGTGTGCGCATTGCCACTGAGATATGTGCAG 2086
Query 2034 CACTAGTCTTTCTTCATTCCAATAAAGCTCATAGCTTAGTACATGGTGATTTGAAGCCAG 2093
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2087 CACTTGTCTTTCTTCATTCTAATAAAGCTCATAGCTTAGTACATGGTGATTTGAAGCCGG 2146
Query 2094 CAAATATCCTTCTCGATTCCAATCTCGTTAGCAAGTTAAGTGACTTTGGAACCTGCTCAC 2153
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2147 CAAATATCCTACTCGATTCCAATCTCGTTAGCAAGTTAAGTGACTTTGGGACCTGCTCAC 2206
Query 2154 TACTTCATCCTAGTGGAAGCAAAAGTGTGAGAACTGATGTCACGGGCACAGTTGCCTATT 2213
|||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 2207 TACTTCATCCTAACGGAAGCAAAAGTGTGAGAACTGACGTTACAGGCACAGTTGCCTATT 2266
Query 2214 TGGATCCAGAAGCTTCCAGTAGTGGAGAGCTAACTCCGAAGTCAGATGTGTACTCGTTTG 2273
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2267 TGGATCCAGAAGCTTCCAGTAGTGGAGAGCTAACTCCTAAGTCAGATGTTTACTCGTTTG 2326
Query 2274 GGATTATCTTATTGCGCTTGTTGACCGGGAGACCAGCCTTACGGATATCAAACGAAGTGA 2333
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 2327 GGATTATCTTATTGCGCTTGTTGACCGGGAGACCTGCCTTACGGATATCAAATGAAGTGA 2386
Query 2334 AGTATGCCCTCGATAATGGAAAATTGAACGACCTCTTGGACCCTTTAGCAGGGGACTGGC 2393
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2387 AATATGCCCTCGATAATGGAACATTGAACGACCTCTTGGACCCTTTAGCAGGGGACTGGC 2446
Query 2394 CCTTTGTTCAGGCTGAGCAGCTTGCTCGCTTGGCATTGAGATGCTGCGAGACTGTCAGCG 2453
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2447 CCTTTGTTCAGGCTGAGCAGCTTGCTCGCTTAGCATTGAGATGCTGCGAGACTGTCAGCG 2506
Query 2454 AGAATCGTCCGGATCTTGGAACTGAAGTGTGGAGGGTACTTGAACCTATGAGGGCTTCTA 2513
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2507 AGAATCGTCCAGATCTTGGAACTGAAGTGTGGAGGGTACTTGAACCTATGAGGGCTTCTA 2566
Query 2514 GTGGAGGATCTTCATCTTTCCATCTCGGCCGTAATGAGCACCGCATAGCCCCTCCATACT 2573
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 2567 GTGGAGGATCTTCATCTTTCCATCTTGGCCGTAACGAGCACCGGATAGCCCCTCCATACT 2626
Query 2574 TCATTTGCCCCATTTTCCAGGAAGTCATGCAGGATCCACACGTGGCTGCAGATGGTTTCA 2633
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2627 TCATTTGCCCCATTTTCCAGGAAGTCATGCAGGATCCACACGTGGCTGCAGACGGTTTCA 2686
Query 2634 CATACGAAGCAGAGGCTATAAGAGCGTGGCTGGACAGTGAACACGATACTTCACCAATGA 2693
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2687 CATACGAAGCAGAGGCTATAAGAGCGTGGCTGGACAGTGAGCATGATACTTCACCAATGA 2746
Query 2694 CCAATGTCAAGCTTTCTCACACCAGCCTAATCGCTAACCATGCTCTTCGTTCTGCTATTC 2753
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2747 CCAATGTCAAGCTTTCTCACACCAGCCTAATAGCTAACCATGCTCTTCGTTCTGCGATTC 2806
Query 2754 AAGAGTGGCTTCAACATCATTTGTGAAAATAAAATCCTTCGAACCCTCAATCCCTGTTCG 2813
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2807 AAGAGTGGCTTCAACATCATTTGTGAAAATAAAATCCTTCAAACCCTCAATCCCTGTTC- 2865
Query 2814 TTCTCTTATGaaaaaaaGTTTTTGCCTTTTCTGCGGGAGGCAACAGAGAGTAAGTGAGTG 2873
| || | ||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 2866 T-CT-T-ATGAAAAAACGTTTTTGCCTTTTCTGCGGGAGGCAACAGAG--TAAGTGAGT- 2919
Query 2874 AGTAAGATTAGTTTTTTCAATCTTCCTTATACGTATACATACGATCTC-TCCATGGATAG 2932
| | ||||||| |||||| |||||||||||| |||||||||||||| || ||||||||
Sbjct 2920 A--A-GATTAGTGTTTTCAGTCTTCCTTATACATATACATACGATCTAATC-ATGGATAG 2975
Query 2933 CAAGCATATTTGTTTACTTTGTCAAGCATAGTGTAAGTCCTCCATATTTGTCAGATATGA 2992
|| ||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||
Sbjct 2976 CA-GCATATTTGTTTACTTTTTCAAGCATAGTGTAAGTCCTCCATATCAGTCATATATGA 3034
Query 2993 AAAGAAGAAGCTGGTGAGATTTGT--Gt--atatatatatatatatatatatatatatat 3048
|||||||||||||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct 3035 AAAGAAGAAGCTGGTGAGATTTGTATGTGGATATGTATATATATATATATATATATATAT 3094
Query 3049 at 3050
||
Sbjct 3095 AT 3096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151905503404
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5