BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483732
Length=1678
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45920.1 | Symbols: | U-box domain-containing protein | chr... 2470 0.0
AT1G01660.1 | Symbols: | RING/U-box superfamily protein | chr1... 56.5 8e-07
> AT2G45920.1 | Symbols: | U-box domain-containing protein | chr2:18899084-18901303
FORWARD LENGTH=1688
Length=1688
Score = 2470 bits (1337), Expect = 0.0
Identities = 1586/1701 (93%), Gaps = 38/1701 (2%)
Strand=Plus/Plus
Query 1 GGTTGACTTCGTATGCATGTTATAACATAAGAAAATGTTCTTGTTTGTTGATTGCTCCCT 60
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 GGTTGACTTCGTGTGCATGTTATAACATAAGAAAATGTTCTTGCTTGTTGATTGCTCCCT 60
Query 61 CTGTTAAATCAA-TCATCTCTTTTCTTGTATTGCAAAAAATTTATGTTTGTTCTTGTTCA 119
|||||| || || ||||||||||||| ||||||| ||| |||| ||||||||||||| |
Sbjct 61 CTGTTAGAT-AAGTCATCTCTTTTCTCGTATTGC--AAATTTTAAGTTTGTTCTTGTTTA 117
Query 120 TTCTCTTGAGTGAATTAGAGGAATGTTTTGAGTG-TCTCATATGGAGTGTGTTGGAGAAA 178
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
Sbjct 118 TTCTCTTGAGTGAATTAGAGGTATGTTTTGAGTGTTCTCATATGGAGTGTGTTGGAGATA 177
Query 179 GGAGCTTCGATCCAAGCAAAGGGGAAAAGTGTTGGCTTCATGAGGCTTCGATGCAGCGTT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 178 GGAGCTTCGATCCAAGCAAAGGGGAAAAGTGTTGGCTTCATGAGGCTTCGATGCAGCCTT 237
Query 239 AAACGCT-GAATCTAGGCCAATCAAGAGGGTGATAGAGAGAGATGATGGGCAAACCAGGT 297
||||||| |||| ||||||| ||||| || ||||||||||||||||||||||| |||||
Sbjct 238 AAACGCTAAAATCCAGGCCAAGCAAGATGGAGATAGAGAGAGATGATGGGCAAATCAGGT 297
Query 298 TCGCTGCAGCTGCTAATGGATGAGAAGATATATGTTGCAGTGGGGAGTGACTTGGGGAAC 357
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCGCAGCAGCTGCTGATGGATGAGAAGATATATGTTGCAGTGGGGAGTGACTTGGGGAAC 357
Query 358 AAGTCCACTCTAGTTTGGGCGATACAGAACACTGGAGGTAAGGAGTTCTGTATCGTCCAT 417
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 358 AAGTCCACTCTTGTTTGGGCGATACAGAACACTGGAGGCAAGGAGTTCTGTATCGTCCAC 417
Query 418 GTTCACCAGCCGCTCTACAGAAAAGACAAGGAAAAGGCACAAAAGATCCTGGACAAGTAC 477
||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||| |||
Sbjct 418 GTTCACCAGCCACTCTACAGAAAAGAAAAGGAAAAGACACAAAAGATCCTGGACAAATAC 477
Query 478 CTACAAACATGCAGGCAGATGCAGGTCTGTGCTGAGACGATACACATCGAAATGGACTCG 537
||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||| |||
Sbjct 478 CTACAAAAATGCAGGCAAATGCAGGTCTGTGCTGAGATGATACACATTAAAATGGAGTCG 537
Query 538 GTAGAGGAAGGTATCATCCAATTGATCTCAGAGCGCAACGTTAAGAAGCTCGTCATGGGA 597
|||||| |||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 538 GTAGAGAAAGGGATCATCCAATTGATCTCAGAGCGCAATGTCAAGAAGCTCGTCATGGGA 597
Query 598 GCTGCATCAGACAGACACTATTCAATGAGGATGGCAGATCTGTTGTCCACGAAAGCCATT 657
||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GCTGCGTCAGACACACGCTATTCAATGAGGATGGCAGATCTGTTGTCCACGAAAGCCATT 657
Query 658 TACATTCGTCAAGAAGTGCCTGCTACTTGTTGTATATGGTTTACTTGCAAAGGATACCTG 717
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TACATTCGTCAAGAAGCGCCTGCTACTTGTTGTATATGGTTTACTTGCAAAGGATACCTG 717
Query 718 GTATATAAAAGGGAAGCTATCATGGGTAACACCTCTCTAGAGTATGCATCTACAAGTTCT 777
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 GTATATAAAAGGGAATCTATCATGGGCAACACCTCTCTAGAGTATGCATCTACAAGTTCT 777
Query 778 GATCAAGATTCAGTCCGTTCACGAGGATCTGTTATACCTTCGGGCCAATACACGATATCT 837
| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 778 GGTCAAGATTCAGTCCGTTCACGAGGATCTGTTATACCTTCGCGCCAATTCACGATATCT 837
Query 838 AGAGGAAATGGAAATGTGTATCAATTAGCTGTCTTTGAAGCTGAGAAATCGAAAAAAGAA 897
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 838 AGAGGAAATGGAAATGTGTATCAGTTAGCTGTCTTTGAAGCTGAGAAATCGAAAAAAGAA 897
Query 898 GCAAGCTTGGAGGCTTTCAAGCATCAAGAAGTTGAAAAAGAGAAAAATGAAGCAATCAAA 957
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 898 GCAAGCTTGGAGGCTTTCAAGCATCAAGAAGTTGTAAAAGAGAAAAATGAAGCAATCAAA 957
Query 958 AGGGCTAAAGAATGGGAAAATGCCTATTTCGAGGAGTTgaaagaaaggaaagaaacagag 1017
|||| |||||||||||||| ||||||||| |||||||||||| |||||||||||||||||
Sbjct 958 AGGGGTAAAGAATGGGAAAGTGCCTATTTGGAGGAGTTGAAACAAAGGAAAGAAACAGAG 1017
Query 1018 atggagctgaagaaagtgagagaaaaactcgaaaaTATGAGGTATATATCTGAGAACCGA 1077
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1018 ATGGAGCTGAAGAAAGTGAGAGAAAAACTCGAAAAGATGAGGTATATATCTGAGAACCGA 1077
Query 1078 ATAACCGAGTCTTATATGCTGGTACAAAAGCTGCAAGACAAGTATAACTTGGCAACGAAA 1137
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATAACCGAGTCTTATATGTTGGTACAAAAGCTGCAAGACAAGTATAACTTGGCAACGAAA 1137
Query 1138 GTGTTGAGAAAAGCCAAGGAAGAACGGGATAGATTGATAAAAGGACGCGACATAGCAATT 1197
|||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||
Sbjct 1138 GTGTTGAGAAAAGCCAAGGAAGAACGAGATTTATTGATTAAAGGACGCGACATAGCAATT 1197
Query 1198 ATAGAAGTAGAGGAGCTAAGAAAAATCCATGAGAAGGTCTCTCGATCTGATGAGCACCGT 1257
|||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct 1198 ATAGAAGTAGAGGAGCTAAGAAAA------GAG--G-TCTCTCGATCTGATGAGCACCGT 1248
Query 1258 GAAGCTCCTCAGTACTTCATCTGTCCCATTTCACTGGAAGTGATGAAGGATCCACAACTA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 GAAGCTCCTCAGTACTTCATCTGTCCCATTTCACTGGAAGTGATGAAGGATCCACAACTA 1308
Query 1318 GCATCAGATGGATTTACATATGAAGCAAAAGCCATAAGCACATGGCTTCAGAGAGGACAT 1377
||| ||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||
Sbjct 1309 GCAGCAGATGGATTTACATATGAAGCAGAAGCCATAAGTACATGGCTTCAGGGAGGACAT 1368
Query 1378 GAGACTTCCCCAATGACAAACAAGAAGCTTCTTCATACAAAGTTAGTTCCAAATCTTGCT 1437
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1369 GAGACTTCCCCAATGACAAACACGAAGCTTCATCATACAAAGTTAGTTCCAAATCTTGCT 1428
Query 1438 CTTCGATCTGCAATCCAGGAATGGCTTCACGCTTCATCCTCTTCCAGAAAGTGAATAGAA 1497
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1429 CTTCGATCTGCAATCCAGGAATGGCTTCACGCTTCATCCTCTTTTAGAAAGTGAACAGAA 1488
Query 1498 ATAAAATCACACTAAA-ATATATTCTTAAGCATTTGCTTCAACGGACTCGTCTCTGCTTG 1556
|||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1489 ATAAAATCACACTAAATATATATTCTTAAGCATTTGCTTCAACGAACACGTCTA--CTTG 1546
Query 1557 TAATGTATATTAAACCGATGTAAt--------tttt-ttC-T----C-C---ATGTTT-T 1597
|| | ||||||||||| ||||||| |||| ||| | | | || ||| |
Sbjct 1547 TACTTTATATTAAACCCATGTAATGAAAAACCTTTTCTTCATTTTTCTCTCCAT-TTTCT 1605
Query 1598 ATTTATTTTCTTATTAATACAATCTGACCATATGCATTACGTTGAAAACAGCTAATTAAC 1657
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1606 ATTTATTTTCTTAGTAATACAATCTGACCATATGTATTACGTTGAAAACAGCCAATTAAC 1665
Query 1658 GAAATAAAATTTGTATAGATA 1678
|||||||||| || | |||||
Sbjct 1666 GAAATAAAATATGAAAAGATA 1686
> AT1G01660.1 | Symbols: | RING/U-box superfamily protein | chr1:240057-242608
REVERSE LENGTH=1707
Length=1707
Score = 56.5 bits (30), Expect = 8e-07
Identities = 39/43 (91%), Gaps = 2/43 (5%)
Strand=Plus/Plus
Query 580 AAGAAGCTCGTCATGGGAGCTGCATCAGA-CAGACACTATTCA 621
||||||||||||||||||||||||||||| || || ||||||
Sbjct 325 AAGAAGCTCGTCATGGGAGCTGCATCAGATCAT-CATTATTCA 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82931300340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5