BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483761
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46160.1 | Symbols: | RING/U-box superfamily protein | chr2... 1147 0.0
> AT2G46160.1 | Symbols: | RING/U-box superfamily protein | chr2:18963083-18963885
FORWARD LENGTH=803
Length=803
Score = 1147 bits (621), Expect = 0.0
Identities = 742/800 (93%), Gaps = 9/800 (1%)
Strand=Plus/Plus
Query 1 CTTCTTCTTTACCATCAAATGTCAACAGTCGCCTCCTCCGCCTCCGTCTTCCTAGTCCAC 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 9 CTTCTTCTTTACCATCAAATGTCAACACTCGCCTCCTCCGCCTCCGTCTTCCTAGTCCAC 68
Query 61 CCTCCTTTTCCACCGTCGCCACCGCACGGTGGCAACCACTCTTACCTTACAACTCTAGGC 120
||||| |||||||||||||||| || | ||||||||||||||||| ||||||||||||
Sbjct 69 CCTCCCCTTCCACCGTCGCCACCACAAGCAGGCAACCACTCTTACCTCACAACTCTAGGC 128
Query 121 TTTGGCTACTCCATAGCCATAGCTCTCGGTTTCCTCGTCCTTCTCTCAACCGTCCTTCTA 180
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 129 TTTGGCTACTCCATAGCCATAGCTCTCGGTTTTCTCGTCCTTCTCTCGACCGTCCTTTTA 188
Query 181 TCCTCATACATATGTTGCCGTGACTCTCGCCGCCGCACAACCGCCGTGGAATCCGCAGGA 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 189 TCCTCATACATCTGTTGCCGTGACTCTCGCCGCCGCACAACCGCCGTGGAATCCACAGGC 248
Query 241 GACCGTGGCGGAAGTGTAATCCTTCCTCGCATAATCTTCGTCGCCGAAGAAGACAATGAA 300
|| |||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||
Sbjct 249 GATCGTGGCGGAAGTGTAATCCTCCCCCGCATAATCTTTGTCGCCGAGGAAGACAATGAA 308
Query 301 GATCTCGAAGCAGGTGATGTCGTCGTGGGACTCGATCAAGCCGTCATCAACTCTTACCCT 360
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 309 GATCTCGAAGCAGGTGATGTCGTGGTGGGACTTGATCAAGCCGTCATCAACTCATACCCT 368
Query 361 AAGTTCCACTTTTCCAAAGATTCCTCCGCGGCTTCCTCTGATGGCTTTGGTGGCGGAGGA 420
||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||
Sbjct 369 AAGTTCCACTTTTCCAAAGATACCTCCGCCGCGTCCTCAGATGGCTTTGGTGGCGGAGGA 428
Query 421 GATACGACGTGTTCGATCTGTTTGTGTGAGTATAAAGAAGCGGAGATGCTGAGGATGATG 480
|| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 429 GACACAACGTGCTCGATCTGTTTATGTGAGTATAAAGAAGCGGAGATGCTGAGGATGATG 488
Query 481 CCCGAGTGTAAACACTACTTCCATTTGTGTTGTCTTGATGCGTGGCTTAAACTCAACGGA 540
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 489 CCGGAGTGTAAACACTACTTCCATTTGTGTTGCCTTGATGCGTGGCTTAAACTCAACGGA 548
Query 541 TCTTGTCCCGTTTGTCGGAACTCGCCGCTTCCGACGCCGACATCAACGCCTCTGTCAACA 600
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 549 TCTTGTCCCGTTTGTCGGAACTCGCCGCTTCCAACGCCGACTTCAACGCCTCTGTCAACG 608
Query 601 CCTTTGTCGGAAGTTGTGCCGCTTTCACAGTACGCCGCCGATCGGAGGAGAGCGAGAAGA 660
|||||||| ||||||||||| || || |||||||| ||||||||||||||||| ||||||
Sbjct 609 CCTTTGTCAGAAGTTGTGCCTCTCTCCCAGTACGCGGCCGATCGGAGGAGAGCAAGAAGA 668
Query 661 TGATATTATTATTACATAGATCCATTCGCCTAATTAATTAGGGTAATTCCTAGT-ATTAT 719
||||||||||||||||||||||||||||||||| | ||||||||||||||| | |||||
Sbjct 669 TGATATTATTATTACATAGATCCATTCGCCTAA--A-TTAGGGTAATTCCTATTTATTAT 725
Query 720 TTTTGCTCCGTTTCATCACAACGTTCCTGATTCAGTGATTTGTAATTAAAAATCCGTCAA 779
|||||||||||||||| ||||| || |||||| || ||| || |||||||||||||
Sbjct 726 TTTTGCTCCGTTTCATTACAACTTTACTGATTT-GTAATTA--AA--AAAAATCCGTCAA 780
Query 780 AAGTGGAGTATGCCATTAAT 799
||||||||| ||||||||||
Sbjct 781 AAGTGGAGTTTGCCATTAAT 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38881229778
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5