BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483815
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46550.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1932 0.0
> AT2G46550.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G01240.3);
Has 72 Blast hits to 68 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 71; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19111989-19114173
REVERSE LENGTH=1666
Length=1666
Score = 1932 bits (1046), Expect = 0.0
Identities = 1355/1495 (91%), Gaps = 58/1495 (4%)
Strand=Plus/Plus
Query 1 AAGAAAACGATAATaaactgcaaaa-gattcaaaagcttttaatcgaaagcaaacaaaaa 59
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1 AAGAAAACGATAATAAACTGCAAAATGATTCAAAAGATTTTAATCGAAAGCAAACAAAAA 60
Query 60 ttctctgacaa--acaaaa-aaaaaCAATTCAGAACAACTCTTATC-T-TT-------CT 107
||||||||||| | |||| ||||| || ||||||||||||||||| | || ||
Sbjct 61 TTCTCTGACAATCAGAAAACAAAAAAAAATCAGAACAACTCTTATCTTCTTCACGAGACT 120
Query 108 ---T---C-A-CATAGATTTTTCCGTTTTGTGTGTTTCGTCTGGTGTTACTCTCTCCTTC 159
| | | |||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 121 GACTAAACAATCATAGATTTTTCCGTTTTTTGGGTTTCGTCTGGTGTTACTCTCTCCTTC 180
Query 160 TGAGTTATGGTGAAATAATGGCAGCAGCTGAAGCAAGAGCAGTGTGGCAAAGAACTGTTA 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 TGAGTTATGGTGAAATAATGGCAGCAGCTGAAGCAAGAGCAGTGTGGCAAAGAACAGTTA 240
Query 220 ACCGTTGCTTTGTCCAAGAAGACGCTAAAAGAGCTCCCAAGTTAACCTATTGCCAATCTT 279
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 241 ATCGTTGCTTTGTCCAAGAAGACGCTAAAAGAGCTCCCAAGTTAACTTATTGCCAA---T 297
Query 280 CATCCTCCTCCTCAACTACTCCTTCAACTAAGCAAGTTGAAGATTCTGGTTCGTCTCCTC 339
|||| || ||||||||| || |||||||||||||||| |||| ||||||||| |||||||
Sbjct 298 CATCTTCATCCTCAACTGCTTCTTCAACTAAGCAAGTGGAAGTTTCTGGTTCTTCTCCTC 357
Query 340 GAGTTTCTGTTGATCCACGGAAGCAATCATCTTGTGCAGGTTTCATGCCTCTTCATCGAA 399
||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 358 GAGTTTCTGTTGAACCACGGACTCAATCATCTTGTGCAGGTTTCATGCCTCTTCCTCGAA 417
Query 400 ACCCGAATTTCCCTGATCTGTTACCCCACAACACCAGATTGTGGAGTCATCATCATCATC 459
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 418 ACCCGAATTTCCCTGATCTGTTACCCCACAACACCAGACTGTGGAGTCATCCTCATCATC 477
Query 460 ACTTTCAGGTGTATAAG-A--TGCCTTTGGAGGCTGAGGTTAACAATCAAGGTGTATCTG 516
| ||||||||| ||||| | ||| ||||||| ||||||||||||||||||||||||||
Sbjct 478 AGTTTCAGGTGAATAAGAAGCAGCCATTGGAGGATGAGGTTAACAATCAAGGTGTATCTG 537
Query 517 AGAAGAAGTCTGAATTGGGAGCTGGAGAGAAACAAGGAAAGTCTTTTAATTCCGAAAGCT 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGAAGAAGTCTGAATTGGGAGCTGGAGAGAAACAAGGAAAGTCTTTTAATTCCGAAAGCT 597
Query 577 TTCAAGAGTTTATAGAGTTGGGGGAAACAAGGGA-A---A--G------T---TATGATG 621
|||||||||||||||||||| ||| |||||||| | | | | |||||||
Sbjct 598 TTCAAGAGTTTATAGAGTTGATGGAGACAAGGGAGAGTTATGGTTCAACTGGGTATGATG 657
Query 622 AGTCCTCTGAGAAAAAGTTAAGTGAGCTCCCTTTTGATCCCAGCTCGCCGTGGAATCCTC 681
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||
Sbjct 658 AGTCCTCTGAGAAAAAGTTAAGTGAGCTCTCTTTTGATCCTAGCTCGCCGTGGAATCTTC 717
Query 682 TCTCGAGCGAGAAAGCTGGGCCGTGGTGGCGAACTACGGATAAAGACGAGTTAGCCTCCT 741
||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 718 TCTCGAGTGAGAAAGCTGCACCGTGGTGGCGAACTACGGATAAAGACGAGTTAGCTTCCT 777
Query 742 TGGTTGCACAAAGATCTCTAGACTATGTTGAGAATTGTGATTTACCAACACCACAGAAGA 801
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 778 TGGTTGCACAAAGATCTCTAGACTATGTTGAGAATTGTGATTTACCAACACCGCAGAAGA 837
Query 802 TGAAACGATCTTATTATGGTAGTCCGCGTGGTTTTGATTCTGATGGATTCAGAGACTACT 861
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 838 TGAAACGATCTTATTATGGTAGTCCACGTGGTTTTGATTCTGATGGATTGAGAGACTACT 897
Query 862 CTGTCTCTGGCCAAACCATCCCCGAGCACGGG-CCGAGCAGAGGAAGCAGCTGCAAGAAC 920
||||||||||||||||||| | | | ||| | |||| |||||||||||||||||||
Sbjct 898 CTGTCTCTGGCCAAACCAT---C-A--A-GGGTACAAGCAAAGGAAGCAGCTGCAAGAAC 950
Query 921 AGAACCGAGGCTTCGTCTGAGCCTGATTTAAGCAAAACCGAGCTACTAGAAGCGCTGAGG 980
||| |||||||||| |||||| |||||||||||||| ||||||| |||||||| ||||||
Sbjct 951 AGACCCGAGGCTTCATCTGAGTCTGATTTAAGCAAATCCGAGCTTCTAGAAGCACTGAGG 1010
Query 981 CATTCCCAAACGCGGGCTAGGGAAGCGGAGAACATGGCTAAAGAAGCTTATGCAGAGAAA 1040
| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1011 CGTTCGCAAACGCGGGCTAGGGAAGCGGAGAATATGGCTAAAGAAGCTTATGCAGAGAAA 1070
Query 1041 GAGCACTTGGTGAAGATCTTGTTCAAGCAAGCCTCAGAGCTTTTCGGGTATAAGCAATGG 1100
||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 1071 GAGCACTTGGTGAAGATATTGTTGAAGCAAGCCGCAGAGCTTTTTGGGTATAAGCAATGG 1130
Query 1101 TTACAGCTGCTTCAGCTCGAAGCACTTTACCTCCAAATCAAGAAAAAGAAGAATGAGAAC 1160
||||| ||||||||||| |||||||||||||||||||||||||| ||| ||| ||| ||
Sbjct 1131 TTACAACTGCTTCAGCTAGAAGCACTTTACCTCCAAATCAAGAACAAGGAGATTGACAAT 1190
Query 1161 AAGGACAGCAACGAGCCAGCGGTTTCCATCCCTTGTTGGAGCAATGGGAAAGCAAGAAAA 1220
||| ||| | |||| |||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1191 AAGAACAACGACGATCCAGGGGTTTCCATCCCTTGTTGGAGCAATGGCAAAGCAAGAAAA 1250
Query 1221 CAGGGGAGAAAGAGAAGAAGCAAAAGGGGTAAACCGAATGGAGCAAAGTACGCGGTTGGT 1280
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GAGGGGAGAAAGAGAAGAAGCAAAAGGGGTAAACCGAATGGAGCAAAGTACGCGGTTGGT 1310
Query 1281 TTAGCTTTGGGGATGAGTCTTGTTGGTGCTGGTTTGCTTCTTGGATGGACTGTCGGATGG 1340
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1311 TTAGCATTGGGGATGAGTCTTGTTGGTGCTGGTTTGCTTCTTGGATGGACTGTTGGATGG 1370
Query 1341 ATGCAGATGCTATCCTTGTAGTCTAAAGAGAAAGATAAAGAGA-AGAAA-TG-AGTCGTT 1397
|||||||||||||| || |||| ||||||||| || ||||||| | ||| | | || ||
Sbjct 1371 ATGCAGATGCTATCGTTCTAGTTTAAAGAGAA-GA-AAAGAGACA-AAACTTCA-TCTTT 1426
Query 1398 TT-CTCAAGGAACAGCTTGATGATCTTGAAATGAGTTTAAAGATTTGCTTCGAAT 1451
|| |||| ||||||||||||||| |||||||||||| ||||||| |||||||||
Sbjct 1427 TTTCTCATTGAACAGCTTGATGATGTTGAAATGAGTTAAAAGATTGGCTTCGAAT 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76957435485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5