BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483835 Length=1561 Score E Sequences producing significant alignments: (Bits) Value AT2G46710.1 | Symbols: | Rho GTPase activating protein with PA... 2486 0.0 > AT2G46710.1 | Symbols: | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain | chr2:19191935-19194849 FORWARD LENGTH=1731 Length=1731 Score = 2486 bits (1346), Expect = 0.0 Identities = 1492/1563 (95%), Gaps = 7/1563 (0%) Strand=Plus/Plus Query 1 AAACGATGACTAACTTCTCCCGATCCAAATCCACCGGAACTATCGGTTTCCCGGAGTTTA 60 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 166 AAACGATGACTAACTTCTCCCGATCCAAATCCACCGGAACTATCGGGTTCCCGGAGTTTA 225 Query 61 AACCGACTCGACCCGGTCCAGACATATACGAGAACGGCCACAACGATGACGACGAGTACG 120 |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 226 AACCCACTCGACCCGGTCCAGACAAATACGAGAACATCCACAACGATGACGACGAGTACG 285 Query 121 AGGAAGGACATAGCACTACGAGCACAGACTACTACGACGCTTCAACGCCGTTGAGCTCAC 180 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 286 AAGAAGGACATAGCACTACGAGTACAGACTACTACGACGCTTCAACGCCGTTGAGCTCAC 345 Query 181 ACGCGTCAAGATCAGGGAACGGGTCCGGGTCGGGTCAGTTAACGATCGTAGACCTTCTTG 240 ||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 346 ACGCGTCAAGATCCGGGAACGGGTCCGGCTCGGGTCAGTTAACGGTCGTAGACCTTCTTG 405 Query 241 CGGCGGTTCTGAGGAAGTCGCTGGTGATGTCGTGTGCCATGGAGAGAGGGGACGATGACG 300 |||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||| Sbjct 406 CGGCGGTTCTGAGGAAGTCGTTGGTGATGTCGTGTGCGATGGAGAGAGGGGAAGATGACG 465 Query 301 TGGCGGCGTCTATGGATATAGGTTGGCCGACGGAGGTTAAGCACGTGAGTCACGTGACTT 360 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 TGGTGGCGTCTATGGATATAGGTTGGCCGACGGAGGTTAAGCACGTGAGTCACGTGACTT 525 Query 361 TTGACCGGTTTAATGGTTTTCTTGGTCTTCCGTCTGAGCTCGAACCGGAGGTTCCTCCTC 420 |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 526 TTGATCGGTTCAATGGTTTTCTTGGTCTTCCTTCTGAGCTCGAACCGGAGGTTCCTCCTC 585 Query 421 GAGCTCCTAGCGCCAGTGTAAGTGTATTTGGAGTATCGGCAAAGTCAATGCAATGCTCTT 480 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 586 GAGCTCCTAGCGCCAGTGTAAGTGTATTTGGAGTATCGGCGAAGTCAATGCAATGCTCTT 645 Query 481 ATGACGACAGAGGAAATAGTGTCCCAACAATCCTTCTCAGGATGCAAAAACGTCTATACA 540 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 646 ACGACGACAGAGGAAATAGTGTCCCAACAATCCTTCTCAGGATGCAAAAACGTCTATACA 705 Query 541 CCGAAGGAGGTCTTAAAGCAGAAGGAATATTCCGAATAAATCCAGACAACGGCAAAGAAG 600 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 706 CTGAAGGAGGTCTTAAAGCAGAAGGAATTTTCCGAATAAATCCAGACAACGGCAAAGAAG 765 Query 601 AGCATGTCCGAAGACAGCTAAACCGCGGTGTGGTACCACGTGGAATTGACGTTCATTGCT 660 |||||||||| |||||| | ||| | ||||||||||||||||||||||| |||||||||| Sbjct 766 AGCATGTCCGTAGACAGTTGAACTGTGGTGTGGTACCACGTGGAATTGATGTTCATTGCT 825 Query 661 TGGCAGGATTAATAAAGGCATGGTTTAGGGAGCTACCTACAGGAGTGCTTGATGTGTTGA 720 |||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 826 TGGCGGGTTTAATAAAGGCGTGGTTCAGGGAGCTACCTACAGGAGTGCTTGATGTGTTGA 885 Query 721 CACCAGAGCAAGTGATGAGGTGTAACACAGAGGAGGATTGTAGCCGGCTAGTGACACTTC 780 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 886 CACCAGAGCAAGTAATGAGGTGTAACACGGAGGAGGATTGTAGCCGGCTAGTGATACTTC 945 Query 781 TTCCTCCCGTTGAATCTGCGCTTCTCGACTGGGCCATTGGTCTAATGGCGGATGTGGTGG 840 ||||||| |||||||||||| |||| || |||||||| |||||||||||||||||||||| Sbjct 946 TTCCTCCGGTTGAATCTGCGATTCTTGATTGGGCCATCGGTCTAATGGCGGATGTGGTGG 1005 Query 841 AGCATGAACAGTTTAACAAAATGAATGCTCGCAATGTAGCTATGGTCTTTGCCCCAAACA 900 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1006 AGCATGAACAGTTTAACAAAATGAATGCTCGCAATGTAGCTATGGTCTTTGCTCCAAATA 1065 Query 901 TGACTCAAATGGCAGATCCTTTAACTGCACTAATCCACGCGGTGCAAGTGATGAACTTTC 960 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 1066 TGACTCAAATGGCAGATCCTTTAACTGCACTCATCCACGCAGTGCAAGTGATGAACTTTC 1125 Query 961 TCAAGACTTTGATCTTAATGAACCTCAAAGAGAGGGACAACGCAGACGCGAAAGCAAGGT 1020 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 1126 TCAAGACTTTGATCTTAATGAACCTCAAAGAAAGGGAAAACGCAGACGCGAAAGCAAGGT 1185 Query 1021 GGCTCGAGAAACAAACATCTAATCCATCAGAAGAATGGGAATCACAACACTCTGAGATAT 1080 ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 1186 GGCTCAAGAAACAAACATCTGATCCATCAGAAGAATGGGAATCACAACACTCCGAGATAT 1245 Query 1081 TAAGCCCTGAGAAACCCAACAATAATAACCCTAAGTTTTTGAGAGTGGCTACTCTGTGTA 1140 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 1246 TAAGCCCTGAGAAACCAAACAATAATAACCCTAAGTTCTTGAGAGTGGCTACTCTGTGTA 1305 Query 1141 GGCTAGAGGCTGACAATGAAGAAAAGTTTTGGAACATAAAGAAGAGAAACGATCATGAAG 1200 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 1306 GGCTAGAGGCTGACAATGAAGAAGAGTTTTGGAATATAAAGAAGAGAAACGATCATGAAG 1365 Query 1201 CTGTTTTAAATACTTCATCGGGTAATGAAAACATCGGACCGGTACAAAGGTTATGTAAGC 1260 ||||||| |||||||||||||||||| ||| || ||||||||||||||||| ||||||| Sbjct 1366 GTGTTTTAGATACTTCATCGGGTAATGGAAATATTGGACCGGTACAAAGGTTGTGTAAGC 1425 Query 1261 ATCCACTGTTTCAGTTAAGCAAATCCACAAAGAAAGCTTTTGTAAGTAATCGAGATGAAG 1320 ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1426 ATCCATTGTTTCAGTTAAGCAAATCCACCAAGAAAGCTTTTGTAAGTAATCGAGATGAAG 1485 Query 1321 GAAGGAAAGGACGAGAAGCTTGGAGTTCACGTCTCTCTTCTTTGCCTTGGTAAAATTTTC 1380 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1486 GAAGAAAAGGACGAGAAGCTTGGAGTTCACGTCTCTCTTCTTTGCCTTGGTAAAATTTTC 1545 Query 1381 TTACCTCACTTTATTTTTCATGTTTTTGAGAGTGTAAAAAATATTGTGAAATATGATTAT 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1546 TTACCTCACTTTATTTTTCATGTTTTTGAGAGTGTAAAAAATATTGTGAAATATGATTAT 1605 Query 1441 AGGTGTTAGTTGTTTGAAA-TAGGGATAAATTTATATCCAATCAATTCAGAAATGGAAAC 1499 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1606 AGGTGTTAGTTGTTTGAAAATAGGGATAAATTTACATCCAATCAATTCAGAAATGGAAAC 1665 Query 1500 AAATGTATGCTAGTT-CTTGTCTAAGAGAAAACTCATGTATACTCTATTCACAAAAACAG 1558 |||||||| |||||| ||| ||| ||||||||||||| | |||||||||||||||||| Sbjct 1666 AAATGTATCCTAGTTACTT-TCTGAGAGAAAACTCAT--A--CTCTATTCACAAAAACAG 1720 Query 1559 AGC 1561 ||| Sbjct 1721 AGC 1723 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77057836575 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5