BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483843
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | pseudo-response regul... 2383 0.0
AT2G46670.1 | Symbols: | CCT motif family protein | chr2:19164... 881 0.0
> AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | pseudo-response regulator
9 | chr2:19232649-19235087 FORWARD LENGTH=1818
Length=1818
Score = 2383 bits (1290), Expect = 0.0
Identities = 1532/1643 (93%), Gaps = 39/1643 (2%)
Strand=Plus/Plus
Query 82 TGTGATTTTGTTTGTTTTGAGCTCTGAATCTATGGGGGAGATTGTGGTATTAAGTAGTGA 141
||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 195 TGTGATTCAGTTTGTTTTGAGGTCTGAGTCTATGGGGGAGATTGTGGTTTTAAGTAGTGA 254
Query 142 TGATGGTATGGAGACGATAAAGAACAGAGTAAAGTCATCGGAAGTTGTTCAGTGGGAGAA 201
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 TGATGGTATGGAGACTATAAAGAACAGAGTAAAGTCATCGGAAGTTGTTCAGTGGGAGAA 314
Query 202 GTATTTGCCTAAAACTGTGCTTAGGGTTTTGTTGGTTGAATCTGATTACTCAACTCGTCA 261
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 315 GTATTTGCCTAAAACTGTACTTAGGGTTTTGTTAGTTGAATCTGATTACTCAACTCGTCA 374
Query 262 AATCATCACTGCCCTTCTTCGTAAATGCTGTTACAAAGTTGTAGCTGTTTCTGATGGTTT 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 AATCATCACTGCCCTTCTTCGTAAATGCTGTTACAAAGTTGTAGCTGTTTCTGATGGTTT 434
Query 322 AGCTGCGTGGGAGGTTCTAAAGGAGAAGTCACATAACATTGATCTTATACTAACTGAGCT 381
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 435 AGCTGCGTGGGAGGTTCTAAAGGAGAAGTCACATAACATTGATCTTATACTAACAGAGCT 494
Query 382 GGATTTGCCATCTATATCTGGTTTTGCTCTGCTTGCTTTGGTTATGGAGCATGAAGCTTG 441
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 495 GGATTTGCCATCTATATCTGGTTTTGCTCTGCTTGCTTTGGTAATGGAGCATGAAGCTTG 554
Query 442 CAAGAACATTCCTGTCATAATGATGTCTTCGCAAGATTCGATAAAAATGGTGTTGAAGTG 501
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 555 CAAGAACATTCCTGTCATAATGATGTCTTCTCAAGATTCGATAAAAATGGTGTTGAAGTG 614
Query 502 TATGCTGAGAGGTGCTGCTGATTATCTAATCAAACCAATGAGGAAAAACGAGTTGAAAAA 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 TATGCTGAGAGGTGCTGCTGATTATCTAATCAAACCAATGAGGAAAAACGAGTTGAAAAA 674
Query 562 TCTATGGCAACATGTGTGGAGAAGACTTACTTTGCGTGATGATCCTACTGCTCATGCTCA 621
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 675 TCTATGGCAACATGTTTGGAGAAGACTGACTTTGCGTGATGATCCTACTGCTCATGCTCA 734
Query 622 AAGCTTACCAGGTTCACAGCACAACCTTGAAGATACTGATGAAACTTGTGAAGATTCCAG 681
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 AAGCTTACCAGCTTCACAGCACAACCTTGAAGATACTGATGAAACTTGTGAAGATTCCAG 794
Query 682 ATACCATTCTGATCAAGGAAGTGGTGCTCAGGCTATCAGCTACAATGGTCACAATAAGCT 741
||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 795 ATATCATTCAGATCAAGGAAGTGGTGCTCAGGCTATCAATTACAATGGTCACAATAAGCT 854
Query 742 AATGGAGAATGCCAAATCAGTGGATGAAAGAGACGAGTTTAAGGATTCTTTTGATGTGAC 801
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 855 GATGGAGAATGGCAAATCAGTGGATGAAAGAGACGAGTTTAAGGAAACTTTTGATGTGAC 914
Query 802 AATGGATTTGATTGGTGGAATTGACAAGCGTCCTGATAGTCTTTATGGAGACGACAGTCG 861
|||||||||||||||||||||||||||||||||||||||| ||||| |||| | |||||
Sbjct 915 AATGGATTTGATTGGTGGAATTGACAAGCGTCCTGATAGTATTTATAAAGACAAGAGTCG 974
Query 862 TGACGAGTGTGTTGGTCCTGAGCTTGGACTTTCTCTGAAAAGATCTTGCTCTGTAAGTTT 921
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 AGATGAGTGTGTTGGTCCTGAGCTTGGACTTTCTCTGAAAAGATCTTGCTCTGTAAGTTT 1034
Query 922 TGAGAACCAAGATGAAAGCAAGCATCAAAAGCTTAGCCTCTCTGATGCATCAGCCTTCTC 981
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1035 TGAGAACCAAGATGAAAGCAAGCATCAAAAGCTTAGCCTCTCTGATGCGTCGGCCTTCTC 1094
Query 982 AAGATTTGAG-AATAGTAAGCCAGCAGAGAAAGCTGTCGTTGCTTTAGAGGAGAGTAGTT 1040
|||||||||| || || ||| ||||||| ||||| |||||||||||||||||||||| ||
Sbjct 1095 AAGATTTGAGGAA-AGCAAGTCAGCAGAAAAAGCCGTCGTTGCTTTAGAGGAGAGTACTT 1153
Query 1041 CAGGTGAGCCAAAGACACCAACCGAATCACATGAAAAGTTAAGAAAAGTAAGATCTGATC 1100
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1154 CAGGTGAGCCAAAGACACCAACCGAATCACATGAAAAGTTAAGAAAAGTAACATCTGATC 1213
Query 1101 AAGGAAGCGCCACAACGAGCAGCAACCAGGAGAATATCGGATCATCAAGCGTAAGCAGAC 1160
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1214 AAGGAAGCGCCACAACGAGCAGCAACCAGGAGAATATCGGATCATCAAGCGTAAGCTTCC 1273
Query 1161 AATGTGGACAGAACGAG-TTAAGCTTC-CA-TAACCAAGTTCTGAAGCAACATCTGCAAG 1217
|| || || | || || | | || |||| || | | ||||||| || | ||
Sbjct 1274 ---GTA-ACC-AA-GTTCTTCAG-TCCACAGTAACGAA-T-CAGAAGCAAGAT-T-CA-- 1320
Query 1218 ATTCCTCTATACCGGTAGAATCAAATCGTGTGAAAGCAGATAGCAAGGAAGTAGAAGTTG 1277
|| | |||||||||||||||||||| | |||||||| ||||||||||||||||| ||
Sbjct 1321 ---CC-C-ATACCGGTAGAATCAAATCGCGAGAAAGCAGCTAGCAAGGAAGTAGAAGCTG 1375
Query 1278 GTTCTCAAAGCACCTGCAACACCAATGAGGGGATTGGTGGACAAAGCAGTAGCACAGAGA 1337
|||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1376 GTTCTCAAAGCACC---AA------TGAGGGGATTGCTGGACAAAGCAGTAGCACAGAGA 1426
Query 1338 AACCAAAGGAAGAAGAAAGTGTGAAACAACGTTGGAGTAGAAGCCAGAGAGAAGCTGCAT 1397
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1427 AACCAAAGGAAGAAGAAAGTGCGAAACAACGTTGGAGTAGAAGCCAGAGAGAAGCTGCAT 1486
Query 1398 TGATGAAGTTCCGGTTGAAGAGGAAAGACCGTTGCTTTGATAAAAAGGTTCGATACCAGA 1457
|||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||
Sbjct 1487 TGATGAAGTTCCGGTTGAAGAGGAAAGATCGATGCTTTGACAAAAAGGTTCGGTACCAGA 1546
Query 1458 GCAGGAAGAAGCTAGCAGAACAACGACCACGAGTGAAAGGCCAGTTCGTGCGAGCCGTGA 1517
||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 1547 GCAGGAAGAAGCTAGCAGAACAACGTCCTCGAGTGAAAGGCCAGTTCGTGCGAACCGTGA 1606
Query 1518 ATTCAGATGCGTCTACTAAATCATGAAGCTCTCTTTAAGTTTTTC-TCTGATTTCTTTTG 1576
||||||| |||||||| ||||||||||| |||||| |||||||| ||||||||||||||
Sbjct 1607 ATTCAGACGCGTCTACAAAATCATGAAGAGCTCTTTCAGTTTTTCCTCTGATTTCTTTTG 1666
Query 1577 TTGATTTTGTATCAGAAACTTATTTAGCTTT-GCAATCTTTAGTGTGCtttttttGTTT- 1634
|||||||| || ||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1667 TTGATTTTATAACAGAAACTTATTTAGCTTTTGCAATCTTTAGTGTGCTTTTTTTTTTTA 1726
Query 1635 TGTATTTG---G-CTTCTTCTTCTCAGCTAATATGAGATATTGGGGCAACTTTTGTATAT 1690
|||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1727 TGTATTTGATTGGCTTCTTCTTCTCAGCTAATATGAGATACTGGGGCAACTTTTGTATAT 1786
Query 1691 ATGTCTGCAAATTATCAGGCTAA 1713
|||||||||||| ||||||||||
Sbjct 1787 ATGTCTGCAAATGATCAGGCTAA 1809
> AT2G46670.1 | Symbols: | CCT motif family protein | chr2:19164414-19165233
REVERSE LENGTH=727
Length=727
Score = 881 bits (477), Expect = 0.0
Identities = 659/740 (89%), Gaps = 39/740 (5%)
Strand=Plus/Plus
Query 983 AGATTTGA-GAATAGTAAGCCAGCAGAGAAAGCTGTCGTTGCTTTAGAGGAGAGTAGTTC 1041
|||||||| ||| || ||| ||||||| ||||| |||||||||||||||||||||| |||
Sbjct 16 AGATTTGAGGAA-AGCAAGTCAGCAGAAAAAGCCGTCGTTGCTTTAGAGGAGAGTACTTC 74
Query 1042 AGGTGAGCCAAAGACACCAACCGAATCACATGAAAAGTTAAGAAAAGTAAGATCTGATCA 1101
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 75 AGGTGAGCCAAAGACACCAACCGAATCACATGAAAAGTTGAGAAAAGTAAGATCTGATCA 134
Query 1102 AGGAAGCGCCACAACGAGCAGCAACCAGGAGAATATCGGATCATCAAGCGTAAGCAGACA 1161
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 135 AGGAAGCTCCACAACGAGCAGCAACCAGGAGAATATCGGATCATCAAGCGTAAGC-TTC- 192
Query 1162 ATGTGGACAGAACGAGTTAAGCTTCCATAACCA-AGT-TCTGAAGCAACATCTGCAAGAT 1219
|| | | | |||| ||| || ||| ||| | ||| | | | |||||||
Sbjct 193 -CGT----A-ACCAAGTT---CTT-CA-GTCCACAGTAAC-GAATC-AGA--AGCAAGAT 237
Query 1220 TC-CTCTATACCGGTAGAATCAAATCGTGTGAAAGCAGATAGCAAGGAAGTAGAAGTTGG 1278
|| | | |||||||||||||||||||| | |||||||| ||||||||||||||||| |||
Sbjct 238 TCAC-CCATACCGGTAGAATCAAATCGCGAGAAAGCAGCTAGCAAGGAAGTAGAAGCTGG 296
Query 1279 TTCTCAAAGCACCTGCAACACCAATGAGGGGATTGGTGGACAAAGCAGTAGCACAGAGAA 1338
||||| || | | ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 297 TTCTC-AA--A---G---CACCAATGAGGGGATTGCTGGACAAAGCAGTAGCACAGAGAA 347
Query 1339 ACCAAAGGAAGAAGAAAGTGTGAAACAACGTTGGAGTAGAAGCCAGAGAGAAGCTGCATT 1398
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 348 ACCAAAGGAAGAAGAAAGTGCGAAACAACGTTGGAGTAGAAGCCAGAGAGAAGCTGCATT 407
Query 1399 GATGAAGTTCCGGTTGAAGAGGAAAGACCGTTGCTTTGATAAAAAGGTTCGATACCAGAG 1458
||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||
Sbjct 408 GATGAAGTTCCGGTTGAAGAGGAAAGATCGATGCTTTGACAAAAAGGTTCGGTACCAGAG 467
Query 1459 CAGGAAGAAGCTAGCAGAACAACGACCACGAGTGAAAGGCCAGTTCGTGCGAGCCGTGAA 1518
|||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct 468 CAGGAAGAAGCTAGCAGAACAACGTCCTCGAGTGAAAGGCCAGTTCGTGCGAACCGTGAA 527
Query 1519 TTCAGATGCGTCTACTAAATCATGAAGCTCTCTTTAAGTTTTTC-TCTGATTTCTTTTGT 1577
|||||| |||||||| ||||||||||| |||||| |||||||| |||||||||||||||
Sbjct 528 TTCAGACGCGTCTACAAAATCATGAAGAGCTCTTTCAGTTTTTCCTCTGATTTCTTTTGT 587
Query 1578 TGATTTTGTATCAGAAACTTATTTAGCTTT-GCAATCTTTAGTGTGCtttttttGTTT-T 1635
||||||| || ||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 588 TGATTTTATAACAGAAACTTATTTAGCTTTTGCAATCTTTAGTGTGCTTTTTTTTTTTAT 647
Query 1636 GTATTTG---G-CTTCTTCTTCTCAGCTAATATGAGATATTGGGGCAACTTTTGTATATA 1691
||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 648 GTATTTGATTGGCTTCTTCTTCTCAGCTAATATGAGATACTGGGGCAACTTTTGTATATA 707
Query 1692 TGTCTGCAAATTATCAGGCT 1711
||||||||||| ||||||||
Sbjct 708 TGTCTGCAAATGATCAGGCT 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84688319415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5