BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483848
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46820.1 | Symbols: PTAC8, TMP14, PSAP, PSI-P | photosystem ... 1321 0.0
> AT2G46820.1 | Symbols: PTAC8, TMP14, PSAP, PSI-P | photosystem
I P subunit | chr2:19243589-19245141 FORWARD LENGTH=936
Length=936
Score = 1321 bits (715), Expect = 0.0
Identities = 803/842 (95%), Gaps = 20/842 (2%)
Strand=Plus/Plus
Query 94 GATTCTTCCGAGGCTTGAAGCTCAAAAGCTATGGCTTCTCTTTCAGTCTCTTCCTCTTCG 153
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 111 GATTCTTCCGAGGCTTGAAGCTCAATAGCTATGGCTTCTCTTTCAGTCTCTTCCTCTTCA 170
Query 154 ACCATCATCGATTCGAGAGCTCCTCCTTCTCGACAAGCCTCCGCCTCCGCCTCTTCTCCG 213
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 171 ACCATCATCGATTCAAGAGCTCCTCCTTCTCGACTAGCCTCCGCCTCCGCCTCTTCTCCG 230
Query 214 TCGTGTATTTCACTTCCCACACTTCCTCCTACGCCGATTCAGTCTCATACCCGCGCCGCT 273
||||| ||||||||||||||| || | |||||||||||||||||||| ||||||
Sbjct 231 TCGTGCATTTCACTTCCCACA----CT--T---CCGATTCAGTCTCATACCCGTGCCGCT 281
Query 274 AAAGCCACTGCTTACTGTCGGAAGATTGTGAGGAACGTTGTGACGAGAGCTACTACTGAA 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 AAAGCCACTGCTTACTGTCGGAAGATTGTGAGGAACGTTGTGACGAGAGCTACTACTGAA 341
Query 334 GTTGGTGAAGCTCCTGCCACTACTACCGAAGCTGAGACTACTGAGTTACCTGAAATCGTC 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 GTTGGTGAAGCTCCTGCCACTACTACCGAAGCTGAGACTACTGAGTTACCTGAAATCGTC 401
Query 394 AAGACTGCTCAAGAAACTTGGGAGAAAGTGGAGGACAAGTACGCTATTGGTTCTCTTGCC 453
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 402 AAGACTGCTCAAGAAGCTTGGGAGAAAGTGGATGACAAGTACGCTATTGGTTCTCTTGCC 461
Query 454 TTTGCTGCTGTAGTGGCTCTTTGGGGATCTGCTGGAATGATTTCGGCAATCGATAGGCTT 513
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 462 TTTGCTGGTGTAGTGGCTCTTTGGGGTTCTGCTGGAATGATTTCGGCAATCGATAGGCTT 521
Query 514 CCATTGGTTCCTGGTGTTCTTGAACTTGTAGGCATCGGTTACACAGGATGGTTCACTTAC 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 CCATTGGTTCCTGGTGTTCTTGAACTTGTAGGCATCGGTTACACAGGATGGTTCACTTAC 581
Query 574 AAGAACCTGGTCTTCAAACCAGACAGGGAGGCTCTGTTTGAGAAGGTCAAGAACACATAC 633
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 582 AAGAACCTGGTCTTCAAACCAGACAGGGAGGCTTTGTTTGAGAAGGTCAAGAGCACATAC 641
Query 634 AAAGACATATTAGGGAGCAGCTGAATCAAAGGAGgaagaagaagaagaagaGCCTTTTTG 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 AAAGACATATTAGGGAGCAGCTGAATCAAAGGAGGAAGAAGAAGAAGAAGAGCCTTTTTG 701
Query 694 GGGGGCCATTCATGAATTCGAATGAAGGATAGATATCAAAAGAATCTAACACAAAGGCCA 753
|| ||||||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct 702 AGG--CCATTCATGAATTGGAATGAAGGATA--T--CAAAAGAATCTAACACAAAGGCCA 755
Query 754 CGTCCTTCCTTCAATCTTTCCTTCTTGTAACTAAATAATTTTCATCCTTTCT-T-TCTCT 811
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 756 CGTCCTTCCTTCAATCTTTCCTTCTTGTAACTAAATAATTTTCATCCTTTCTCTCTCTCT 815
Query 812 GTCTCTTGGTCtttttttAGCTCAAAATATCATCCATTTATGTCAA-GTGTTGTAAATTC 870
|||||| |||||||||| |||||||| ||||||||||||||||||| |||||||||||||
Sbjct 816 GTCTCT-GGTCTTTTTT-AGCTCAAAGTATCATCCATTTATGTCAAAGTGTTGTAAATTC 873
Query 871 CTCAAGACTATATATGAGATGTTTTATTTCATTTTCCAAATTTTCAAACTTTTTCACCAT 930
||||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||
Sbjct 874 CTCAAGACTATATATGAGATGTTTTGTTTCATTTTCCAAAATTTCAAACTTTGTCCCCAT 933
Query 931 TT 932
||
Sbjct 934 TT 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45562371329
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5