BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483858 Length=2224 Score E Sequences producing significant alignments: (Bits) Value AT2G46900.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Basic hel... 3123 0.0 > AT2G46900.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (source: NCBI BLink). | chr2:19269558-19272195 FORWARD LENGTH=2212 Length=2212 Score = 3123 bits (1691), Expect = 0.0 Identities = 2065/2238 (92%), Gaps = 56/2238 (3%) Strand=Plus/Plus Query 1 AGAGAAGCGAGGGATTAGCGTGTGTATCGACGAGAT-ATCATCTA---GTCGGAGTCGCC 56 ||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||| Sbjct 1 AGAGAAGCGAGGGATTAGC--GTGTATCGACGAGATAATCATCTAGTCGTCGGTGTCGCC 58 Query 57 GCCTTTCTCCGCCGTCTTTAATCGTCCTTGTTGGATTTTCCGAAGACGAAGCAGGCGTAA 116 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | || Sbjct 59 GCCTTTCTCCGCCGTCTGAAATCGTCCTTGTTCGATTTTCCGAAGACGAAGCAGGAG-AA 117 Query 117 -ACATGTCTGGGAGGTTGCTgaagaaggttctccaggaacacgaagaatcgaaactccag 175 | |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 118 GATATGTCTGGGAGGTTGCTGAAGAAGGTTCTCCAGGAACATGAAGATTCGAAACTTCAG 177 Query 176 aaacatcacgaagaagaagaagaagaggaagaagaggaagaagaagaagaaTCAGGAGCC 235 ||||||||| ||||||| | | |||||||| | || |||||||||||||||||| Sbjct 178 AAACATCAC------GAAGAAG-A-A-GAAGAAGA-G--GACGAAGAAGAATCAGGAGCC 225 Query 236 CGTTCTTCGATTAATCCATTCGATCTCTTGAACGACGGTGATGAAGATCCTGAGGAGATA 295 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | | Sbjct 226 CGTTCTTCGATTAATCCATTCGATCTCTTGAACGATGGTGATGAAGATCCTGA-G-G--A 281 Query 296 GAGGTTGATGATGAGACTATAGTTGTGAAGAAGAACGAAGATGCGGATCATCAGTCAAAG 355 || |||||||||||||||||| || |||||||||||||||||||||||||||||| ||| Sbjct 282 GA--TTGATGATGAGACTATAGCTGAGAAGAAGAACGAAGATGCGGATCATCAGTC-AAG 338 Query 356 AAT-GTTGATAATGTGCAGCCGGCGTCAAAGAATAAGTCgaagaaaaagaaaaagaagaa 414 | | |||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 339 TGTCGCTGATCATGTGCAGCCGGTGTCAAAGAATAAGTCGAAGAAAAAGAAAAAGAAGAA 398 Query 415 aaacaaagaGAGTGGTTCTAATGTGGCTAAAGCTGAAATCACTTTGGATGAAACTTTAGA 474 |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| || Sbjct 399 GAACAAAGAGAGTGGCTCTAATGTGCCTAAAGCTGAAATGACTTTGGATGAAACTTTGGA 458 Query 475 AGCACTTGGTCTCAGTGCTAACTCTAAGCAAGATAAGGTTCAGGAGACTAAAGCAAATGC 534 |||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 459 AGCACTTGGTCTCAATGCTAACTCTAAGCAAGATAAGGTTCAGGAGACAAAACCAAATGC 518 Query 535 TGATTCTTCCAAAAAGGCTTCTTCACGATTTGTGTTGGAAGTAGATCCCAAGTATCTGAA 594 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 519 TGATTCTTCCAAAAAGGCTTCTTCACGATTTGTGTTGGAAATAGATTCCAAGTATCTGAA 578 Query 595 TCTTGAGAACGAGTTGAGGAGAATGTATGGTTCAAAGGCTATGAGATCATTTGAGAGTGA 654 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 579 TCTTGAGAACGAGTTGAGGAGAACGTATGGTTCAAAGGCTATGCGATCATTTGAGAGTGA 638 Query 655 GAGTGGCTCTCAAGGTGGTGGTAGCTCTAGACAAGTACGAGGGGGTAGACGTGGAGTCCA 714 ||||||||||||||||||| |||||||| || ||||||||| || ||||||||||| Sbjct 639 GAGTGGCTCTCAAGGTGGTAGTAGCTCT-----AG-ACGAGGGGGAAGGCGTGGAGTCCA 692 Query 715 TCATATCACAAAGACGGTTCTGATATCTCCAAAGGAGAATTGGTCTCGCTGGGATAGATC 774 |||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| Sbjct 693 TCATATCACAAAGACGGTTCTGGTATCTCCAAAAGAGAATTGGTCTCGATGGGATAGATC 752 Query 775 TTTCTCAATGGAGTTTCTAGAGACTAAAGATGGTAACAACTACTTCAGATATACCCATTC 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 753 TTTCTCAATGGAGTTTCTAGAGACTAAAGATGGTAACAACTACTTCAGATATACCCATTC 812 Query 835 ATCCTCATATGAGCAGGCTCAGAGGGCATTTCAGGCTGCACAGGCTATCCATGATTTGAA 894 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 813 ATCCTCATATGAGCAGGCTCAGAGAGCATTTCAGGCTGCACAAGCTATCCATGATTTGAA 872 Query 895 TGGTGTAGCAAGTGTCCTTATACACCATCCTTACCATATTGAGTCGCTCATAACTATGGC 954 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 873 TGGTGTAGCAAGTGTCCTTATACACAATCCTTACCATATTGAGTCGCTCATAACTATGGC 932 Query 955 GGACTACTTTAAGTTTGTTGGTGAGCATGATATGGCTGCAGATTCCATTGGAAAGTGCTT 1014 ||| |||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| Sbjct 933 GGATTACTTTAAGTTTGTAGGTGAGAATGATATGGCTGCAGATTCCATTGGAAAATGCTT 992 Query 1015 GTACGGATTGGAGCGTGCATGGCATCCTATGTTCACTCCGTTCCAGGGTAATTGCCGGTT 1074 |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 993 GTACGGTTTGGAGCGTGCGTGGCATCCTATGTTCACTCCGTTCCAGGGTAACTGCCGGTT 1052 Query 1075 GGAGTTTACCCACGA-GACAAACAAGCTGTTCTTCAAGACGCTTTTCACTCACATGAGAA 1133 |||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1053 GGAGTTTAACCACGATGA-AAACAAGCTGTTCTTCAAGACGCTTTTCACTCACATGAGAA 1111 Query 1134 ACATGGACAGGCGTGGCTGTCATAGGTCAGCGTTGGAGGTCTGCAAATTCTTGCTTTCGT 1193 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1112 ACATGGACAGGCGTGGCTGTCATAGGTCAGCGTTGGAGGTCTGCAAACTCTTGCTTTCCT 1171 Query 1194 TGGACATGAGTGATCCAGTAGGCGCTTTGTTTTGTGTGGACTACTTTGCTTTGAGAGCAG 1253 |||||| |||| |||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1172 TGGACACGAGTAATCCTGTGGGCGCTTTGTTTTGTGTGGACTACTTTGCTTTGAGAGCAG 1231 Query 1254 AGGAGTATGCGTGGCTGGAGCAATTCTCGGAGGAGTACCGCAATGACAACTCATTATGGC 1313 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1232 AGGAGTATGCGTGGCTGGAGCAATTCTCGGAGGAGTACCGAAATGATAACTCATTATGGC 1291 Query 1314 TCTTCCCTAATTTCTCTTATTCGCTTGCTATAGCCCGAGTTTATCTCGAGAAGATGGAGT 1373 |||| || |||||||||||||||||||| ||||| ||||||||||| || ||||||||| Sbjct 1292 TCTTTCCGAATTTCTCTTATTCGCTTGCAATAGCACGAGTTTATCTTGAAAAGATGGAGC 1351 Query 1374 CTTCCTCTTCATCAGAAGCCACTCAC-GTAGATACTTCGAAGTCAA-GCTCTTTGGATCT 1431 || ||||||| ||||||||||||| | | ||||||||||||| ||| ||||||||||||| Sbjct 1352 CTACCTCTTCCTCAGAAGCCACTCCCAG-AGATACTTCGAAG-CAAAGCTCTTTGGATCT 1409 Query 1432 CATGACACAAGCTTTGAAGCTTCATCCAACAGTACTCAAGAAGCTAGTGGACAAGGTACC 1491 |||||| |||||||||||||||||||||||||||||||| || |||||||| || ||||| Sbjct 1410 CATGACGCAAGCTTTGAAGCTTCATCCAACAGTACTCAACAAACTAGTGGAAAAAGTACC 1469 Query 1492 TTTAAAAGATCAGGCATGGACAAAGATACTCAAGCATTCTTACTTCCGATCAGATGAATC 1551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1470 TTTAAAAGATCAGGCATGGACAAAGATACTCAAGCATTCTTACTTCCGATCAGATGAATC 1529 Query 1552 AAAGATCCCATCCTTGGATCACCTTATTAACTTATATGTCGAAAGGAATTACCTTATATG 1611 ||||||||| || || |||||||| || || ||||||| || |||||||| |||||||| Sbjct 1530 AAAGATCCCGTCTTTAGATCACCTCATCAAAATATATGTTGAGAGGAATTATCTTATATG 1589 Query 1612 GAGGCTTCCAGATGTCCAGAAGTTGCTTCGCAGTGCTGCTGATTTAGTCATTGAGTCGCT 1671 ||||||||||||||| ||||| |||||||| || |||||||||||||||||||| || || Sbjct 1590 GAGGCTTCCAGATGTACAGAAATTGCTTCGGAGCGCTGCTGATTTAGTCATTGAATCTCT 1649 Query 1672 GGAACAAAACGGAACCGAAGCCGAGAGCTGGCTTTGTGTAAGGAA-AGAAGCCTTCTCTG 1730 ||||||| | ||||||||||| |||||||||||||||||||| | |||||| |||||| Sbjct 1650 GGAACAAGATGGAACCGAAGCTGAGAGCTGGCTTTGTGTAAG-ATTAGAAGCTTTCTCTT 1708 Query 1731 CTGAGAATAACCAGTACTCTCATTTATCAACACATGATTTCTCTGATTCGATGCCAACTC 1790 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1709 CTGAGAATAACCAGTACTCTCATTTATCAACCCATGATTTCTCTGATTCGATGCCAACTC 1768 Query 1791 TCCCACCAGACAATCTACAGAACTTTGTGGCTGATCCAAGAATGGTGGGAGGAGAGCAAA 1850 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1769 TCCCACCAGACAATTTGCAGAACTTTGTGGCTGATCCAAGAATGGTGGGAGGAGAGCAAA 1828 Query 1851 TGGCTGAAGGCGGCGGGGGAGGTCAACGAC-AAGCACCACCAC---GTCCACGTGATGTG 1906 |||||||||| |||||| ||||||||| || |||||||||||| ||||||||||| || Sbjct 1829 TGGCTGAAGGTGGCGGGAGAGGTCAAC-ACCAAGCACCACCACCACGTCCACGTGATTTG 1887 Query 1907 GCAAATCGGAATCCATTTGCTGTGTTGTTTGAGTCAATACTTCCATGGGCTAATTTTGGA 1966 |||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 1888 GCAAATCGGAGTCCATTAGCTGTGTTGATTGAGTCAATACTTCCATGGGCTAATTTTGGA 1947 Query 1967 GATGAAGACGATGAGATTGCACATGATGGTCAGCACCAACCAGACAACAATGGCTAAATC 2026 |||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||||| || Sbjct 1948 GATGGAGAGGATGAGATTGCACATGATGCTCACCACCAACCAGACAACAATGGCTAA-TC 2006 Query 2027 AATGGCTCTAACTGAATAAAGAAGAAAACTGGTACAAATTTTACAAAATGTGGCCTTGCT 2086 |||||||||||||||| |||||||||||||| | ||| |||||||||||||||||| || Sbjct 2007 AATGGCTCTAACTGAAGAAAGAAGAAAACTGCTTTAAAGTTTACAAAATGTGGCCTTCCT 2066 Query 2087 TTTGTTGTACAGTGCCATTTTGATGGTTTAGTCTAAGGACTCGTGAAATTTGATACTTTG 2146 ||||||||||||||||||||||||||||||||||| ||| || | |||| ||||| | Sbjct 2067 TTTGTTGTACAGTGCCATTTTGATGGTTTAGTCTATGGA-TC---A--TTTGTTACTT-G 2119 Query 2147 GGTAAATCGGATTTAGTCATTTTCAATTCATGTTTCTGGTGGAATAATTGACAGCTTTCA 2206 ||||||||||| || ||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 2120 GGTAAATCGGACTTGGTCATTTTCGATTCATGTT-CTGGTGGAATAATTGACAGCTTTCA 2178 Query 2207 TTGCCCAAAGGCTCGGTT 2224 |||| ||||||||||||| Sbjct 2179 TTGCTCAAAGGCTCGGTT 2196 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 110340797910 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5