BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483864 Length=715 Score E Sequences producing significant alignments: (Bits) Value AT2G46940.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 944 0.0 AT3G62070.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 99.0 5e-20 > AT2G46940.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62070.1); Has 143 Blast hits to 141 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19286658-19287581 REVERSE LENGTH=835 Length=835 Score = 944 bits (511), Expect = 0.0 Identities = 661/728 (91%), Gaps = 32/728 (4%) Strand=Plus/Plus Query 1 TAACTCTTCACTTTCTTCTGTC-TATCTTTAATGGCCTCTGAAGAGAGCATGATGATGAA 59 |||||||||||||||||| ||| |||||||||||| ||||||||||| |||||||| || Sbjct 46 TAACTCTTCACTTTCTTCGGTCATATCTTTAATGGGGTCTGAAGAGAGAATGATGAT-AA 104 Query 60 -TTCTTGTTCCA-TTATAGACGAAGAGTATGAAGATACAGATGATGGGTTTCATTGCCAG 117 ||||| || || || ||||||||||||||||| ||||||||||||||||||||| | || Sbjct 105 GTTCTTCTT-CAGTTCTAGACGAAGAGTATGAATATACAGATGATGGGTTTCATTACGAG 163 Query 118 ACAAGGCAAAACAGTTTGTCTAGGTTATCTATCTGCACAAGTTCCTTCAACGAAGACGAT 177 ||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| Sbjct 164 ACAAGGCAAAACAGTTTGTCTAGATTATCTATCTGCACAAACTCCTTCCACGAAGACGAC 223 Query 178 GATGATAATCCTTCAGAGTTGGGTAATTTCATCTCTACGTTGTC-TCTAGAGAGCTTC-A 235 || ||| |||||||||| |||||||||||| ||||||||||||| | ||||||||||| | Sbjct 224 GAAGATCATCCTTCAGAATTGGGTAATTTCTTCTCTACGTTGTCGT-TAGAGAGCTTCAA 282 Query 236 CTGACGACGTCGGAGCCGAAGCTGACGGAGAAATCTCCGATGACGGTGAAGAATCGGATT 295 | ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 283 C-GACGACGTCGGAGCCGAAGCTGACGTAGAAATCTCCGATGACGGTGGCGAATCGGATT 341 Query 296 CCGATAAAGAATCTTCCGGATTCTACTCTCTCCCGACGATCACATCTCGCCGGAGAAGAA 355 |||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 342 CCGACAAAGACTCTTCCGGATTTTACTCTCTACCGACGATCACATCTCGCCGGAGAAGAA 401 Query 356 AACTCACAGTTTCCGGCGGTTCAGAAACGAGCAAAGAGAGTGAGACGAAAATCGATGGAA 415 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | Sbjct 402 AACTCACAGTTTCCGGCGGTTTAGAAACGAGCAAAGAGAGTGAGACGAAAGTCGATGGGA 461 Query 416 GTAAGTGTA-----GT----CAACGGAGGGTATTAACGGAAAATAGTAAAAG-GGGTAAT 465 ||||||||| || |||||||||||||||| |||||| |||||||| ||| ||| Sbjct 462 GTAAGTGTAATATAGTTAGTCAACGGAGGGTATTAAGGGAAAAGAGTAAAAGAGGG-AAT 520 Query 466 CAGCACGGTCACTGGTTTAACGGCGTGGAGAGAGACAGTGACGGCGGAGGAGAGTTGACG 525 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 521 CAGTACGGTCACTGGTTTAACGGCGTGGAGAGAGACAGTGACGGCGGAGGAGAGTTGACG 580 Query 526 GTGTTAACGAAGGTGAGAGGAGGGAAGAAG---TCAATGAAGATGGGGTTTGAAGAAGTG 582 ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 581 GTGTTAACGAAGGTGAGGGGAGGGAAGAAGAAGTCAATGAAGATGGGGTTTGAAGAAGTC 640 Query 583 AAAGCTTGTAGAGATCTCGGCTTCGAACTGGATGTTCCGGGTCGGGTTTCAATATCCGCC 642 ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 641 AAAGCTTGTAGAGATCTCGGCTTCGAACTGGATGTTCCGGGTCGGGTTTCA------G-- 692 Query 643 GGGTCAAACCGAGAGACTAGTAGTGGCGGCAACTCTCCCATTGCCAACTGGCGTATCTCA 702 || |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 693 GG-TCAAACCGTGAAACTAGTAGTGGCGGCAACTCTCCCATTGCCAACTGGCGTATCTCA 751 Query 703 AGTCCTGG 710 |||||||| Sbjct 752 AGTCCTGG 759 > AT3G62070.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46940.1); Has 137 Blast hits to 135 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22983138-22984513 REVERSE LENGTH=1290 Length=1290 Score = 99.0 bits (53), Expect = 5e-20 Identities = 330/452 (73%), Gaps = 65/452 (14%) Strand=Plus/Plus Query 285 AGAATCGGATTCCGATAAAGA-ATCTTC-CGGATTCTACTCTCTCCCGACGA-TCACATC 341 ||| || |||||||| ||||| | | | || || |||||||| ||| || || |||| Sbjct 223 AGAGTCAGATTCCGACAAAGAGA-C-ACGTGGGTTTTACTCTCTTCCGGTGACTC-CATC 279 Query 342 TCGCCGGAGAAGAAAACTCACAGTTTCCGGCG-GTTCAGAAACGAGCAAAGAGAGTGAGA 400 |||||||||||||||||| ||||||||||||| ||| || | | | || |||||| | | Sbjct 280 TCGCCGGAGAAGAAAACTTACAGTTTCCGGCGAGTT-AG--ATGCG-AATGAGAGT-A-A 333 Query 401 CGAAAATCGATGGAAGTAAGTGTAGTCAACGGAGGGTATTAACGGAAAATAGTAAAAGGG 460 | |||| |||| |||||||||||| ||||| || | || || | | ||||| Sbjct 334 C-AAAA---ATGGCAGTAAGTGTAGTTTACGGA-GGCA--AA-GG---A-GGGAAAAGAA 381 Query 461 GTAATCAGCACGGTCACTGGTTTAACGGCGTGGAGAGAGACAGTGACGGCGGAGGAG-A- 518 | || | | || | | ||||| | | ||| | ||| || ||| ||| ||| | Sbjct 382 G-AA--A--AAGG-GA---G-TTAAC-G-G-AGAGTGTGAC-GT--CGGTGGAAGAGAAG 425 Query 519 G-TTGACGGTGTTAACGAAG-GTGAGAGGAGGGAAGA-A-GTCAATGAAGATGGGGTTTG 574 | || |||||||| ||| || | ||||| || ||| | ||| ||| ||||||||| Sbjct 426 GCTTAACGGTGTTGACG-AGAGCAAGAGG-TGG-AGATAGGTCGTTGAGGATGGGGTTAC 482 Query 575 AAGAAGTGAAAGCTTGTAGAGATCTCGGCTTCGAACTGGATGTTCCGGGTC-GGGT---- 629 |||||||||||||||||||||||||||| |||||| | || ||||||| || |||| Sbjct 483 AAGAAGTGAAAGCTTGTAGAGATCTCGGGTTCGAATTAGAGGTTCCGGTTCCGGGTCGGA 542 Query 630 T-TCAATATC--CG-CCGGGTCAAAC--CGAGA----GACTAGTAGTGGCGGCAACTCTC 679 | || | || | ||||||| || ||| | ||||||||| |||||| |||| | Sbjct 543 TATCTGTGTCAACAACCGGGTCGAATTTCGATACTCAGACTAGTAGCGGCGGCGACTCAC 602 Query 680 CCATTGCCAACTGGCGTATCTCAAGTCCTGGT 711 |||| |||| |||||||||||| ||||||||| Sbjct 603 CCATCGCCACCTGGCGTATCTCCAGTCCTGGT 634 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34661561430 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5