BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483917 Length=601 Score E Sequences producing significant alignments: (Bits) Value AT2G47400.1 | Symbols: CP12-1, CP12 | CP12 domain-containing pr... 841 0.0 > AT2G47400.1 | Symbols: CP12-1, CP12 | CP12 domain-containing protein 1 | chr2:19446854-19447438 FORWARD LENGTH=585 Length=585 Score = 841 bits (455), Expect = 0.0 Identities = 556/602 (92%), Gaps = 18/602 (3%) Strand=Plus/Plus Query 1 AAAAATCTCTCCTCCTCCATCAAAATCCTCCAACGATGACAACCATAGCTGCAACTGGTC 60 ||||| || | |||||||||||||||||||| ||||||||||||||||||||| |||| | Sbjct 1 AAAAAACTTTTCTCCTCCATCAAAATCCTCCGACGATGACAACCATAGCTGCAGCTGGCC 60 Query 61 TCAACGTCGCGACTCCACGAGTGGTCGTTCGACCGGCGGCTCTTGTATCCGGTCCGGTCC 120 |||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||| Sbjct 61 TCAACGTCGCGACTCCACGAGTGGTCGTTCGACCTGTGGCTCGTGTATTAGGTCCGGTCC 120 Query 121 GGTTGAATTACCCGTGGAAATTCGGTTCGATGAAGCGGATGGTTGTGGTTAAGGCGACAT 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 121 GGTTGAATTACCCGTGGAAATTCGGTTCGATGAAGCGGATGGTTGTGGTTAAGGCTACAT 180 Query 181 CGGAAGGAGGGATATCGGATAAGGTGGAGAAGAGTATACAAGAAGCCAAGGAGACATGCG 240 ||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 181 CGGAAGGAGAGATATCGGAGAAGGTGGAGAAGAGTATACAAGAAGCTAAGGAGACATGCG 240 Query 241 CAGATGATCCGGTGAGCGGCGAGTGTGTGGCGGCGTGGGACGAGGTGGAGGAGCTGAGTG 300 | ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct 241 CTGATGATCCGGTGAGCGGGGAGTGTGTAGCGGCTTGGGACGAGGTGGAGGAGCTGAGTG 300 Query 301 CGGCGGCGAGTCATGCTAGGGACAAGAAGAAAGCTGGTGGCTCCGATCCTTTGGAAGAGT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CGGCGGCGAGTCATGCTAGGGACAAGAAGAAAGCTGGTGGCTCCGATCCTTTGGAAGAGT 360 Query 361 ATTGCAGTGATAATCCTGAGACTGATGAGTGTCGTACTTATGATAATTaaaaaaaaaaTT 420 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 361 ATTGCAATGATAATCCTGAGACTGATGAGTGTCGTACTTATGATAATTAAAAAATA--T- 417 Query 421 TGTTTTTGATGTTCGAATTATGAAAGTTTAGGTATGGTCGTCAGATCGAtgtttgttctt 480 |||||||||||||||||||||||| ||||||||||| ||| || | | || |||||| Sbjct 418 -GTTTTTGATGTTCGAATTATGAAACTTTAGGTATGGA--TCA-AT-G-T-TT-GTTCTT 469 Query 481 cttgtcc-ttgtcgttgtgtttgtgtttttggtttggttgatgattgtAATGTGATAAAT 539 ||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 470 CTTGTCCCTTGTTGTTATGTTTGTGTTTTTGGTTTGGTTGATGATTGTAATGTGATAAAT 529 Query 540 GAATATGAATATGAATAGTACAATACACAACATATGTTTCAAAATTTGTTTTGTTCGATT 599 ||||||||||| | || ||||||||||||||||||||| ||| ||||| |||||||| Sbjct 530 GAATATGAATA-G--TA---CAATACACAACATATGTTTCATAATGTGTTTGGTTCGATT 583 Query 600 AC 601 || Sbjct 584 AC 585 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28934868672 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5