BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483921 Length=1900 Score E Sequences producing significant alignments: (Bits) Value AT2G47440.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2566 0.0 > AT2G47440.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:19469719-19471886 FORWARD LENGTH=2000 Length=2000 Score = 2566 bits (1389), Expect = 0.0 Identities = 1660/1783 (93%), Gaps = 50/1783 (3%) Strand=Plus/Plus Query 1 AAGCTGTCATC--TCTCTCTC-TTCCTTATAGGGCTCTGTTTCTCTCCACATTCACACAC 57 ||||||||||| |||||||| |||||||||| |||||||||||||||||||| ||||| Sbjct 14 AAGCTGTCATCTATCTCTCTCTTTCCTTATAGTGCTCTGTTTCTCTCCACATT--CACAC 71 Query 58 ACAGTGTCCCTCTCTCTCTCCACATTATTAAATCACTTG-TGAAG-----C----AAGGA 107 || | ||||||||||||| | ||||||||||||||||| || | | | Sbjct 72 AC--TCTCCCTCTCTCTCT-C-CATTATTAAATCACTTGTTGTTGTCTTTCTTTTTTCAA 127 Query 108 A-TTTCG-AG--ATTTCttttttttGATGATGATTTAATCGAAAGCTTCTTCCTCCAAAC 163 | || | || | || ||||| ||||||||||||||||||||||||||||||||| Sbjct 128 ACCTTGGAAGCAAGGAATTCTTTTT--TGATGATTTAATCGAAAGCTTCTTCCTCCAAAC 185 Query 164 AAACATCAATGGCGG---------ACGTTAATGGCGATAAGAAGCACTGGTGGTTCAGTC 214 ||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 186 AAACATCAATGGCGGTTTATCCTAACGTTAATGGCGATAAGAAGCACTGGTGGTTCACTC 245 Query 215 ACAGGAAGCTTGTTGATAAGTATATCAAGGATGCAACAACTTTAATGGCAAGTGAGGAGG 274 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 246 ACAGAAAGCTTGTTGATAAGTATATAAAGGATGCAACAACTTTAATGGCAAGTGAGGAGG 305 Query 275 CAAACGACGTCGCTTCTGCTCTTCATTTACTAGACGCTGCGTTATCCATATCCCCGCGTT 334 |||||||||||||||| |||||||||||||||||||| || ||||| || |||||||||| Sbjct 306 CAAACGACGTCGCTTCAGCTCTTCATTTACTAGACGCAGCCTTATCTATCTCCCCGCGTT 365 Query 335 TGGAAACTGCGTTAGAGCTTAAGGCTAGATCTCTGCTCTTCCTCCGTCGTTTCAAGGATG 394 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 366 TGGAAACTGCGTTAGAGCTCAAGGCTAGATCTCTCCTCTTCCTCCGTCGTTTCAAGGATG 425 Query 395 TCGCCGATATGCTTCAGGATTATATCCCCAGTCTTAAACTCTCCCTCACCGACGAAGAAG 454 |||||||||||||||||||||||||||||||||||||| || |||||| |||| Sbjct 426 TCGCCGATATGCTTCAGGATTATATCCCCAGTCTTAAA------CT---CGACGACGAAG 476 Query 455 GATCCGCTTCTTCTCAA---TCCTCTTCCTCCGACGG-ACTCAACCTTCTCTCCGACGCC 510 ||||||||||||||||| || |||||||||||||| | |||||||||||||||||||| Sbjct 477 GATCCGCTTCTTCTCAAGGCTCTTCTTCCTCCGACGGTA-TCAACCTTCTCTCCGACGCC 535 Query 511 TCCTCGCCGGGCTCGTTTAAATGCTTCTCTGTCTCCGACTTGAAGAAGAAAGTCATGGCA 570 || || || ||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 536 TCTTCCCCTGGCTCCTTTAAATGCTTCTCTGTTTCCGACTTGAAGAAGAAAGTCATGGCA 595 Query 571 GGGATTTGTAAAAAATGCGACAAACAAGGGCAATGGAGGTATGTAGTGTTGGGTCAAGCT 630 || ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 596 GGCATTTGTAAAAAATGCGACAAAGAAGGGCAATGGAGGTATGTGGTGTTGGGTCAAGCT 655 Query 631 TGTTGCCATCTAGGACTAATGGAGGATGCGATGGTTCTGCTTCAAACCGGTAAACGCCTC 690 ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||| Sbjct 656 TGTTGCCATCTAGGACTAATGGAGGATGCCATGGTTCTCCTACAAACCGGTAAACGCCTC 715 Query 691 GCCTCCGCCGAGTTCCGTCGCCGGAGTATTTGCTGGTCTGACGATAGCTTCCTTCTCCTC 750 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 716 GCCTCCGCCGAGTTCCGTCGCCGGAGTATTTGCTGGTCCGACGATAGCTTCCTTCTCCTC 775 Query 751 TCCGAATCCTCCTCTACTTCTTCTCCACCACCGGAGAGCGAGAATTTCACCCATCTCCTC 810 ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 776 TCCGAATCCTCCTCTGCTTCTTCTCCACCACCCGAGAGCGAGAACTTCACCCATCTCCTC 835 Query 811 GCTCACATCAAGCTTCTTCTCCGTCGTCGCGCCGCTGCAATCGCCGCTCTCGACGCCGGA 870 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 836 GCTCACATCAAGCTTCTTCTCCGTCGTCGCGCCGCTGCAATCGCCGCTCTCGACGCTGGA 895 Query 871 CTGTTCTCCGAGTCGATCCGTCACTTCTCCAAGATCGTCGATGGTCGTCGCCCTGCGCCT 930 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 896 CTGTTCTCCGAGTCGATCCGTCACTTCTCCAAGATCGTCGATGGCCGTCGCCCTGCGCCT 955 Query 931 CAAGGATTCCTCGCCGAATGCTATATGCATCGAGCCGCCGCTTATAGATCCGCCGGTAGA 990 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 956 CAAGGATTCCTCGCCGAATGCTACATGCATCGAGCCGCCGCTTATAGATCCGCCGGTAGA 1015 Query 991 ATCGCGGAAGCGATCGCCGATTGCAATAAAACCCTAGCTCTTGAACCGTCGTGTATCCAA 1050 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1016 ATCGCGGAAGCGATCGCCGATTGCAATAAAACCCTAGCTCTTGAACCCTCGTGTATCCAG 1075 Query 1051 GCGTTGGAGACGAGAGCCGCGCTCCTGGAAACGGTGAGGTGTTTTCCAGATTCGCTTCAC 1110 ||||| || || ||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 1076 GCGTTAGAAACCAGAGCCGCGCTTCTAGAAACGGTCAGGTGTTTTCCAGATTCGCTTCAC 1135 Query 1111 GATCTAGAACACTTGAAGCTTCTCTACAACACCATTTTACGCGATCGGAAGCTTCCAGGC 1170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1136 GATCTAGAACACTTGAAGCTTCTCTACAACACCATTTTACGCGATCGGAAGCTTCCGGGT 1195 Query 1171 CCGGTGTGGAAGCGGCACAACGTGAAATACAGAGAAATTCCTGGGAAATTGTGCGTTTTG 1230 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1196 CCGGTGTGGAAGCGGCACAACGTGAAATACAGAGAGATTCCTGGGAAATTGTGCGTTTTG 1255 Query 1231 ACAACGAAAACGCAGAAACTTAAGCAGAAAATCGCAAACGGAGAAACTGGGAATGTCGAT 1290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1256 ACAACGAAAACGCAGAAACTTAAGCAGAAAATCGCAAACGGAGAAACTGGGAATGTCGAT 1315 Query 1291 TATTACGGCTTGATCGGAGTCAGACGCGGATGCACCAGATCGGAGCTCGATCGAGCTCAT 1350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 TATTACGGCTTGATCGGAGTCAGACGCGGATGCACCAGATCGGAGCTCGATCGAGCTCAT 1375 Query 1351 CTATTGCTGTGTCTCAGATACAAACCCGATAGAGCCTCGTCTTTCATCGAACGGTGCGAG 1410 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1376 CTATTGCTATGTCTCAGATACAAACCCGATAGAGCCTCTTCTTTCATCGAACGGTGCGAG 1435 Query 1411 TTCACCGATCAAAACGACGTCGATTCGGTTAGAGATCGAGCAAAAATGTCGTCTCTGTTG 1470 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1436 TTCACCGATCAAAACGACGTCGATTCGGTTAGAGATCGAGCCAAAATGTCGTCTCTGTTG 1495 Query 1471 CTTTACCGTTTGATTCAGAAAGGATACTCCGCCGTGACAGCGATCATAGCCGAGGAGCAG 1530 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1496 CTTTACCGTTTGATTCAGAAAGGATACACCGCCGTGACAGCGATCATAGCCGAGGAGCAG 1555 Query 1531 AGGAAGAGCACCATTGCTCACGCTCAAAAGATTGAAGAACGCAAACCGGTGGAAAAATCA 1590 ||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1556 AGGAAGAACGCCATTGCTCACGCTCAAAAGATTGAAGAACGCAAACCGGTTGAAAAATCC 1615 Query 1591 G-TTCCCATCAAGATAACCGGAAACGCTGAACCGAAACCGGTAAATTCCAATGCGTACCA 1649 | ||| || |||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1616 GGTTCT-ATTAAGAGAACCGGAAACGCTGAAACGAAACCGGTAAATTCCAATGCGTACCA 1674 Query 1650 AGGAGTTTTCTGTAGAGATCTCGCTGCTGTTGGGAATCTACTAACCAGGGCTGGTTTTAA 1709 |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1675 AGGAGTATTCTGTAGAGATCTCGCTGCGGTTGGGAATCTACTAACCAGGGCTGGTTTCAA 1734 Query 1710 CCATCCAATCCCGGTTAAATACGAAGCTCTCACTTGCTAAAAA 1752 ||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1735 CCATCCAATCCCGGTTAAATACGAAGCGCTCACCTGCTAAAAA 1777 Score = 180 bits (97), Expect = 5e-44 Identities = 142/161 (88%), Gaps = 14/161 (9%) Strand=Plus/Plus Query 1753 CGTTTCCGTAGATTCGTCTTCGTACAGGAAAACAAATCATTCAGCCGTC----------A 1802 |||||||||||||||||||||| |||| ||||||||||||||||||||| | Sbjct 1828 CGTTTCCGTAGATTCGTCTTCGGACAGAAAAACAAATCATTCAGCCGTCAAAAAAGAAAA 1887 Query 1803 -AAAATAAG-AAATATATATACATTTGATGTATGAATACAAATGAAACAAATGTATTTAT 1860 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1888 TAAAATAAGAAAATATATATACATTTGATGTATGAATACAAATGAAACAA-TGTATTTAG 1946 Query 1861 GTTTGGAAGATTATTCCA-CTACAGGAAATTTTTGTCACTT 1900 |||||||||||||||||| ||||| |||| ||||||||||| Sbjct 1947 GTTTGGAAGATTATTCCAACTACAAGAAAATTTTGTCACTT 1987 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94075821330 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5