BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483923
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47460.1 | Symbols: MYB12, ATMYB12, PFG1 | myb domain protei... 2023 0.0
> AT2G47460.1 | Symbols: MYB12, ATMYB12, PFG1 | myb domain protein
12 | chr2:19476337-19479478 FORWARD LENGTH=1453
Length=1453
Score = 2023 bits (1095), Expect = 0.0
Identities = 1289/1379 (93%), Gaps = 27/1379 (2%)
Strand=Plus/Plus
Query 1 ACTCAGTAACTTCTCTTTCTCACTTACACActctctctctctctctTTCCGTTG-CTTGA 59
||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 1 ACTCAGTAACTTCTCTTTCTCACTTACACACTCTCTCTCTCTCTC--TCCATTGCCTTGA 58
Query 60 C-TTTGTGGTCAGCGTAATAAATACATATAACCGCCGTAGAAAATGGGCAGAGCGCCGTG 118
| ||||||||||| | |||||| |||||||||||||| |||||||||| |||||||| ||
Sbjct 59 CTTTTGTGGTCAGTGGAATAAACACATATAACCGCCGGAGAAAATGGGAAGAGCGCCATG 118
Query 119 TTGCGAGAAGGTCGGTATTAAGAGAGGGCGGTGGACGGCGGAGGAGGACCAGATTCTCTC 178
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTGCGAGAAGGTCGGTATCAAGAGAGGGCGGTGGACGGCGGAGGAGGACCAGATTCTCTC 178
Query 179 CAACTACATTCAATCCAACGGCGAAGGATCTTGGAGATCTCTCCCCAAAAATGCCGGATT 238
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 179 CAACTACATTCAATCCAACGGTGAAGGTTCTTGGAGATCTCTCCCCAAAAATGCCGGATT 238
Query 239 AAAAAGGTGTGGAAAGAGCTGTAGGTTGAGATGGATAAACTATCTTAGATCCGACCTCAA 298
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 239 AAAAAGGTGTGGAAAGAGCTGTAGATTGAGATGGATAAACTATCTAAGATCAGACCTCAA 298
Query 299 GCGTGGGAACATAACTCCAGAAGAAGAAGAACTCGTTGTTAAATTGCATTCCACTTTGGG 358
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCGTGGAAACATAACTCCAGAAGAAGAAGAACTCGTTGTTAAATTGCATTCCACTTTGGG 358
Query 359 AAACAGGTGGTCACTAATTGCGGGTCATCTTCCAGGGAGAACAGACAACGAAATAAAAAA 418
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 359 AAACAGGTGGTCACTAATCGCGGGTCATCTACCAGGGAGAACAGACAACGAAATAAAAAA 418
Query 419 TTATTGGAACTCTCATCTCAGCCGTAAACTCCACAACTTTATTAGGAAGCCGTCCATCTC 478
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 419 TTATTGGAACTCTCATCTCAGCCGTAAACTCCACAACTTCATTAGGAAGCCATCCATCTC 478
Query 479 TCAAGACGTCTCCGCCGTAATCATGA--A-CGCTTCTTCAGCGCCACCGCAGCCGCAGGC 535
|||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 479 TCAAGACGTCTCCGCCGTAATCATGACGAACGCTTCTTCAGCGCCACCGCCGCCGCAGGC 538
Query 536 AAAACGCAGACTCGGGAGAACAAGTAGATCCGCCATgaaaccaaaaatccacagaacaaa 595
|||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 539 AAAACGCAGACTTGGGAGAACGAGTAGGTCCGCTATGAAACCAAAAATCCACAGAACAAA 598
Query 596 aactcgaaaaacaaagaaaacGTCTGCACCGCCCGAGCCTAAAGCCGACGTAGC-GGTGG 654
|||||| ||||| ||||||||||||||||| || |||||||| ||||| ||||| || ||
Sbjct 599 AACTCGTAAAACGAAGAAAACGTCTGCACCACCGGAGCCTAACGCCGATGTAGCTGG-GG 657
Query 655 CTGAGGAAGGAGCATTAATGGTGGAGTTAAGTGGAGCCGAGGCTGAGCTAGGAC--C-AT 711
|||| ||| ||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 658 CTGATAAAGAAGCATTAATGGTGGAGTCAAGTGGAGCCGAGGCTGAGCTAGGACGACCAT 717
Query 712 GTGACTACTATGGAGATGATTGTAATAAAAATCTCATGAGCATTAATGGCGATAATGGAG 771
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 718 GTGACTACTATGGAGATGATTGTAACAAAAATCTCATGAGCATTAATGGCGATAATGGAG 777
Query 772 TTTTAACGTTTGATGATGACATCATCGATCTTTTGTTGGACGAGTCAGATCCTGGCGACT 831
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 778 TTTTAACGTTTGATGATGATATCATCGATCTTTTGTTGGACGAGTCAGATCCTGGCCACT 837
Query 832 TGTACACAA-C-----GTGCGGTGGTGATGGGGAGTTGAATAACATGAGAGACTCTGAAG 885
||||||||| | |||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 838 TGTACACAAACACAACGTGCGGTGGTGATGGGGAGTTGCATAACATAAGAGACTCTGAAG 897
Query 886 GAGCCAGAGGGTTCTCGGAGACTTCGAACCAAGGGAGTCTCGACTGTCTTCTTCAGTCGT 945
||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |
Sbjct 898 GAGCCAGAGGGTTCTCGGATACTTGGAACCAAGGGAATCTCGACTGTCTTCTTCAGTCTT 957
Query 946 GTCCATCGGTGGAGTCGTTTCTCAACTATGACCACCAAGTTAACGATGCGTCAACGGATG 1005
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 958 GTCCATCGGTGGAGTCGTTTCTCAACTACGACCACCAAGTTAACGATGCGTCGACGGATG 1017
Query 1006 AGTTTATCGATTGGGATTGTGTTTGGCAAGAAGGTAGTGATAATAATATTTGGCATGAGA 1065
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1018 AGTTTATCGATTGGGATTGTGTTTGGCAAGAAGGTAGTGATAATAATCTTTGGCATGAGA 1077
Query 1066 AAGAGAGTCCCGACTCAATGGTGTCGTGGCTTTTGGACGGTGATGATGAGGCCACGATCG 1125
|||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1078 AAGAGAATCCCGACTCAATGGTCTCGTGGCTTTTAGACGGTGATGATGAGGCCACGATCG 1137
Query 1126 GGAAAAGTAATTGTCAGAACTTCGGAGAACCGTTGGATCATGACGACGAAAACGCTTTGG 1185
|||| ||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||
Sbjct 1138 GGAATAGTAATTGTGAGAACTTTGGAGAACCGTTAGATCATGACGACGAAAGCGCTTTGG 1197
Query 1186 TCGCTTGGCTTCTGTCTTGATGATATTGATTGATCCGTTAAGTAATCtttttttttttGT 1245
|||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct 1198 TCGCTTGGCTTCTGTCATGATGATATTGATTGATCCGTTATGTAATCTTTTTT-----GT 1252
Query 1246 GTATTCACAGTTTGAATCTATTCCACGTCGCATCATATCTTAAAGTTTAGGATCTAAATA 1305
| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1253 GCATTCACAGTTTGAATCTATTCCACGTCGTATCATATCATAAAGTTTAGGATCTAAATA 1312
Query 1306 TTAGTCCATTAGTTAGAATTATATGTATAATGCAATAAAACTCATGGGATGCTTGTATT 1364
||||||||||||||| |||||| | | | ||||||||||| ||||||||| ||| |||
Sbjct 1313 TTAGTCCATTAGTTAAAATTATCT--A-A-TGCAATAAAACCCATGGGATGTTTGGATT 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67168329210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5