BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483928 Length=580 Score E Sequences producing significant alignments: (Bits) Value AT2G47485.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 785 0.0 > AT2G47485.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:19485875-19486553 FORWARD LENGTH=679 Length=679 Score = 785 bits (425), Expect = 0.0 Identities = 521/566 (92%), Gaps = 12/566 (2%) Strand=Plus/Plus Query 1 TATCGATCCGTGCTCTTTATAATGAAACCTAGAGTGtctccgtctctctcactaaaattc 60 |||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| Sbjct 1 TATCGATCCGTGCTCTTTATAAAGAAACCTAGAGTGTCTCCGTCTCTCTCACT-ACATTC 59 Query 61 tccaccgctcaca-----t-tctctctctagatctctAGACACCAATATATATTAATATA 114 ||||| | ||||| | ||||||||| |||||||||||||| | ||| ||| Sbjct 60 TCCACTGTTCACATTCTCTCTCTCTCTCTGGATCTCTAGACACC---A-ATACGCATA-G 114 Query 115 TGAGCAGAGATTGCGATGGAGATAAGGTATTGGCGGAGGTTAAGAGGATACCAAAGGCTA 174 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 115 TGAGCAGAGATCGTGATGGAGATAAGGTATTGGCGGAGGTTAAGAGGATACCAAAGGCTA 174 Query 175 GATGGGTCTGCCAAGAAGGCGAACTCGGGTCGGAGAAATGTGAAGCGGGTCAAAATGGAT 234 ||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||||||| Sbjct 175 GATGGTTCTGCCAAGAAGGCGAGCTCGGGCCGGAGAAATGTAAAGCGGGTCAAAATGGAT 234 Query 235 CCGACCCGGAAGAGACGGTTTTGGAGGATCAAGATTGTGCCGAAGCTAAGGTTCTTAAAA 294 || || ||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| Sbjct 235 CCCACACGGAAGAGACGGTTTTGGAGGATCAAGATAGTGCCGAAGCTAAGGATCTTGAAA 294 Query 295 AAGTCGTCGCCTAAGAAGCTTTTAACGTGGCTTCGAGATGCTTACGTCAACATGATGCTA 354 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 AAGGCGTCGCCTAAGAAGCTTTTAACGTGGCTTCGAGATGCTTACGTCAACATGATGCTG 354 Query 355 CGCCTAGCGAATTCTGGGGTCGTCGGGTCATCGTACGGGTACGGCGAATATGGGTACGGG 414 ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 355 CGCCTAGCGAATTCTCGGGTCGTCGGATCATCGTACGGGTACGGCGAATATGGGTACGGG 414 Query 415 TCGGGTTTGGCGTCGAAGGAGTATGACGAGAAGAAGCTGGTGGAGATTTACAAATCGATA 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 TCGGGTTTGGCGTCGAAGGAGTATGACGAGAAGAAGCTGGTGGAGATTTACAAATCGATA 474 Query 475 TTGATGGCACACGGGAATCTCGTGTACCGCGACGTACCTAAACTTTCCTCCAATTCGATT 534 |||||||| || |||||||||||| |||| |||||||||||||| ||||| ||||||||| Sbjct 475 TTGATGGCTCAGGGGAATCTCGTGCACCGTGACGTACCTAAACTGTCCTCAAATTCGATT 534 Query 535 CTACTTTCACCCCTTAGGTAATTTAA 560 |||| |||||| ||||||||||||| Sbjct 535 TTACTCTCACCCATTAGGTAATTTAA 560 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27879951585 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5