BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483928

Length=580
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G47485.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   785    0.0  


> AT2G47485.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G62650.1); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr2:19485875-19486553 FORWARD LENGTH=679
Length=679

 Score =  785 bits (425),  Expect = 0.0
 Identities = 521/566 (92%), Gaps = 12/566 (2%)
 Strand=Plus/Plus

Query  1    TATCGATCCGTGCTCTTTATAATGAAACCTAGAGTGtctccgtctctctcactaaaattc  60
            |||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct  1    TATCGATCCGTGCTCTTTATAAAGAAACCTAGAGTGTCTCCGTCTCTCTCACT-ACATTC  59

Query  61   tccaccgctcaca-----t-tctctctctagatctctAGACACCAATATATATTAATATA  114
            ||||| | |||||     | ||||||||| ||||||||||||||   | |||   |||  
Sbjct  60   TCCACTGTTCACATTCTCTCTCTCTCTCTGGATCTCTAGACACC---A-ATACGCATA-G  114

Query  115  TGAGCAGAGATTGCGATGGAGATAAGGTATTGGCGGAGGTTAAGAGGATACCAAAGGCTA  174
            ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  115  TGAGCAGAGATCGTGATGGAGATAAGGTATTGGCGGAGGTTAAGAGGATACCAAAGGCTA  174

Query  175  GATGGGTCTGCCAAGAAGGCGAACTCGGGTCGGAGAAATGTGAAGCGGGTCAAAATGGAT  234
            ||||| |||||||||||||||| |||||| ||||||||||| ||||||||||||||||||
Sbjct  175  GATGGTTCTGCCAAGAAGGCGAGCTCGGGCCGGAGAAATGTAAAGCGGGTCAAAATGGAT  234

Query  235  CCGACCCGGAAGAGACGGTTTTGGAGGATCAAGATTGTGCCGAAGCTAAGGTTCTTAAAA  294
            || || ||||||||||||||||||||||||||||| ||||||||||||||| |||| |||
Sbjct  235  CCCACACGGAAGAGACGGTTTTGGAGGATCAAGATAGTGCCGAAGCTAAGGATCTTGAAA  294

Query  295  AAGTCGTCGCCTAAGAAGCTTTTAACGTGGCTTCGAGATGCTTACGTCAACATGATGCTA  354
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  295  AAGGCGTCGCCTAAGAAGCTTTTAACGTGGCTTCGAGATGCTTACGTCAACATGATGCTG  354

Query  355  CGCCTAGCGAATTCTGGGGTCGTCGGGTCATCGTACGGGTACGGCGAATATGGGTACGGG  414
            ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct  355  CGCCTAGCGAATTCTCGGGTCGTCGGATCATCGTACGGGTACGGCGAATATGGGTACGGG  414

Query  415  TCGGGTTTGGCGTCGAAGGAGTATGACGAGAAGAAGCTGGTGGAGATTTACAAATCGATA  474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  415  TCGGGTTTGGCGTCGAAGGAGTATGACGAGAAGAAGCTGGTGGAGATTTACAAATCGATA  474

Query  475  TTGATGGCACACGGGAATCTCGTGTACCGCGACGTACCTAAACTTTCCTCCAATTCGATT  534
            |||||||| || |||||||||||| |||| |||||||||||||| ||||| |||||||||
Sbjct  475  TTGATGGCTCAGGGGAATCTCGTGCACCGTGACGTACCTAAACTGTCCTCAAATTCGATT  534

Query  535  CTACTTTCACCCCTTAGGTAATTTAA  560
             |||| |||||| |||||||||||||
Sbjct  535  TTACTCTCACCCATTAGGTAATTTAA  560



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27879951585


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5