BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483929
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47490.1 | Symbols: ATNDT1, NDT1 | NAD+ transporter 1 | chr2... 2026 0.0
> AT2G47490.1 | Symbols: ATNDT1, NDT1 | NAD+ transporter 1 | chr2:19487246-19489619
FORWARD LENGTH=1550
Length=1550
Score = 2026 bits (1097), Expect = 0.0
Identities = 1191/1235 (96%), Gaps = 11/1235 (1%)
Strand=Plus/Plus
Query 1 CTTTGTTCTGTTTCTCTGCGATTTCTTCGATGTTCTTCTTCTTCGTTTTGATTTTCAGAT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 18 CTTTGTTCTGTTTCTCTGCGATTTCTTCGATGTTCCTCTTCTTCGTTTTGATTTTCAGAT 77
Query 61 TTGTTTAACTCGGTCGCTGCGTTGACTT-AAAATTCTTgagagagagagagagagagaAA 119
|||||||||||||||| ||||||||||| ||| ||||| | ||||||||||||||||| |
Sbjct 78 TTGTTTAACTCGGTCGTTGCGTTGACTTCAAATTTCTTAAAAGAGAGAGAGAGAGAGAGA 137
Query 120 GGAGAATCAAGAGACTCAG--AATCAGTCAGACTCGGGATCTTTCTCGGCAATGCGACGC 177
|||| || || |||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 138 GGAG-AT----AG-TTCAGAAAATCTGTCAGACTTGGGATCTTTCTCGGCAATGCGACGC 191
Query 178 TTGTTCGCCGCGAAATCCCTCTCCAGAGAGGA-ACCAACCTTTTTGTCATTCTCTTCTTC 236
|||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 192 TTGTTCGCCGCGAAATCCCTCTCCCGAGAGGATA-CAACCTTTTTGTCATTCTCTTCTTC 250
Query 237 TTCGGCGACGCGTTTCCACAAGGCTCTTCTTCCTCTCCGTTCAGATCCAAGACATGTCCG 296
||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 251 TTCGGTGACGCGTTTCCTCAAGGCTCTTCTTCCTCTCCGTTCAGATCCAAGAGATGTCCG 310
Query 297 CTAATTCTCATCCTCCTAATTCCAAAAACGTCCTCTGTAATGCAGCCGCCGGTGCCGCCG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 CTAATTCTCATCCTCCTAATTCCAAAAACGTCCTCTGTAATGCAGCCGCCGGTGCCGCCG 370
Query 357 CCGGGGTTGTTGCGGCTACGTTTGTGTGTCCTCTTGATGTTATAAAAACGAGGTTTCAGG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCGGGGTTGTTGCGGCTACGTTTGTGTGTCCTCTTGATGTTATAAAAACGAGGTTTCAGG 430
Query 417 TTCATGGGTTGCCAAAGCTCGGTGATGCAAACATCAAAGGTAGTCTAATTGTTGGCAGTC 476
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TTCATGGGCTGCCTAAGCTCGGTGATGCAAACATCAAAGGTAGTCTAATTGTTGGCAGTC 490
Query 477 TTGAGCAGATCTTCAAGAGAGAAGGGATGCGTGGCTTATACCGCGGACTTTCCCCAACTG 536
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 491 TTGAGCAGATCTTCAAGAGAGAAGGGATGCGTGGCTTATACCGCGGTCTTTCCCCTACTG 550
Query 537 TGATGGCTCTTCTCTCCAATTGGGCAATTTATTTTACAATGTATGACCAGCTCAAGAGCT 596
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 551 TCATGGCTCTTCTCTCCAATTGGGCCATTTATTTTACAATGTATGACCAGCTCAAGAGCT 610
Query 597 TTCTTTGTTCAAATGATCACAAACTCAGCGTTGGAGCTAACGTATTGGCTGCTTCTGGAG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 611 TTCTTTGTTCAAATGATCACAAACTCAGCGTTGGAGCTAACGTATTGGCTGCTTCGGGAG 670
Query 657 CTGGAGCTGCAACTACCATTGCCACAAATCCTCTTTGGGTTGTCAAGACTAGACTTCAGA 716
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 671 CTGGAGCTGCAACTACCATTGCCACAAATCCTCTTTGGGTCGTCAAGACTAGACTTCAGA 730
Query 717 CACAAGGAATGAGAGTGGGTGTAGTGCCATACAAAAGCACACTGTCTGCTTTAAGGAGAA 776
|||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||
Sbjct 731 CACAAGGAATGAGAGTGGGTATAGTGCCATACAAAAGCACATTTTCTGCTTTAAGGAGAA 790
Query 777 TAGCTTACGAGGAGGGAATTCGTGGATTGTACAGTGGTCTTGTGCCTGCACTAGCTGGTA 836
||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 791 TAGCTTATGAGGAGGGAATTCGCGGATTGTACAGTGGTCTTGTCCCTGCACTAGCTGGTA 850
Query 837 TCAGTCATGTTGCCATTCAGTTTCCTACATATGAGATGATCAAAGTCTACTTGGCCAAGA 896
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 851 TCAGTCATGTTGCCATTCAGTTTCCCACATATGAGATGATCAAAGTGTACTTGGCCAAGA 910
Query 897 AAGGTGATAAATCAGTCGATAACCTCAATGCCCGTGATGTAGCAGTTGCCTCTTCGATTG 956
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 911 AAGGTGATAAATCAGTCGATAACCTCAATGCTCGTGATGTAGCAGTTGCCTCTTCGATTG 970
Query 957 CAAAGATATTTGCATCCACATTAACTTACCCGCACGAGGTAGTACGAGCTAGGCTTCAAG 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 CAAAGATATTTGCATCCACATTAACTTACCCGCACGAGGTAGTACGAGCTAGGCTTCAAG 1030
Query 1017 AGCAAGGGCACCACAGTGAGAAACGTTACTCAGGAGTAAGAGATTGCATAAAGAAAGTGT 1076
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1031 AGCAAGGGCACCACAGTGAGAAACGTTACTCAGGAGTAAGAGATTGCATCAAGAAAGTGT 1090
Query 1077 TTGAGAAAGATGGGTTCCCGGGTTTTTACAGAGGCTGCGCCACGAATCTCCTGAGAACAA 1136
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1091 TTGAGAAAGATGGGTTCCCTGGTTTTTACAGAGGCTGCGCCACGAATCTACTGAGAACAA 1150
Query 1137 CTCCTGCAGCAGTTATAACTTTCACTAGCTTCGAAATGGTGCATCGTTTCCTCGTCACTC 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 CTCCTGCAGCAGTTATAACTTTCACTAGCTTCGAAATGGTGCATCGTTTCCTCGTCACTC 1210
Query 1197 ATATACCTTCTGAGCAAAGCTCTATACTTTAAATC 1231
|||||||||||||||||||||||||||||||||||
Sbjct 1211 ATATACCTTCTGAGCAAAGCTCTATACTTTAAATC 1245
Score = 91.6 bits (49), Expect = 2e-17
Identities = 60/65 (92%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 1346 AAAATAACTGATTCTTTTATTTCTCTCTTTTCTGGG-CTTCATGTTACTGAAAGGAAACA 1404
|||| |||||| |||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct 1438 AAAA-AACTGACTCTTTTATTTCTCTGTTTTTTGGGCCTTCATGTTACTGAAAGGAAACA 1496
Query 1405 TATAT 1409
|||||
Sbjct 1497 TATAT 1501
Score = 67.6 bits (36), Expect = 3e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1258 CCTTTTGGGAAATGATTCAAAATAGAAGTTCTTTTATGG 1296
||||||||||||||||||||||||||||||||||| |||
Sbjct 1311 CCTTTTGGGAAATGATTCAAAATAGAAGTTCTTTTCTGG 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69427353735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5