BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483939 Length=1722 Score E Sequences producing significant alignments: (Bits) Value AT2G47590.1 | Symbols: PHR2 | photolyase/blue-light receptor 2 ... 2643 0.0 > AT2G47590.1 | Symbols: PHR2 | photolyase/blue-light receptor 2 | chr2:19521797-19524063 FORWARD LENGTH=1766 Length=1766 Score = 2643 bits (1431), Expect = 0.0 Identities = 1609/1691 (95%), Gaps = 28/1691 (2%) Strand=Plus/Plus Query 43 ACACACAAAAAATGGA---TTCGAACCTTGAAGAAAAGAACCTAAACCCAGAAACAAAAT 99 ||||||| |||||||| |||||| |||||| || |||||||||||||||||||||| Sbjct 81 ACACACACAAAATGGATTCTTCGAATGTTGAAG--AA-AACCTAAACCCAGAAACAAAAT 137 Query 100 CCGCAGAAGAAGAAAACCCACTCGCCATTATCCATCCTTCTCTACCAATCGCATCTCTTT 159 ||||||||||| |||||||||| |||||| ||||| |||||||||||||||||||||||| Sbjct 138 CCGCAGAAGAACAAAACCCACTTGCCATTTTCCATTCTTCTCTACCAATCGCATCTCTTT 197 Query 160 CTCTGACCTTGTTCCCCA-CATCAACTCAATTTCTCAAACTGTTTTCTCATCACCCAAAC 218 ||||||||||||| |||| | || ||||||||||||||| ||||| ||||||| |||||| Sbjct 198 CTCTGACCTTGTT-CCCATCCTCGACTCAATTTCTCAAATTGTTTGCTCATCATCCAAAC 256 Query 219 AAGGTTAAGATCCCTACGCAGGCctcttctctcactcatctctctctttattc--t-tct 275 ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||| Sbjct 257 AAGGTTAAGATCCCTACGCAGGCTTCTTCTCTCACTCATCTCTCTCTTTCTTCTGTCTCT 316 Query 276 cctgtctctccttcaccttccagaatctctttcaAATCCACCATCGCTGCTAACCCTCTT 335 ||| | | ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 317 CCT-T-T-TCCTT---CTTCCAGAATCTCTTTCAAATCCACCATCGCTGCTAACCCTCTT 370 Query 336 CACTCCCCTCTCTCTATCGTCCCTCGTCGTCCCGTTGATCCTTCCTCCGCCGCCGCTCTC 395 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 371 CAATCCCCTCTCTCCATCGTCCCTCGTCGTCCCGTTGATCCTTCCTCCGCCGCCGCTCTC 430 Query 396 CGCCGTGCTGCTGTCGTCTGGTTCCGCAATGACCTCCGTGTCCACGACAACGAGTGTCTC 455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 431 CGCCGTGCTGCTGTCGTCTGGTTCCGCAATGACCTCCGTGTCCACGACAACGAGTGTCTC 490 Query 456 AACTCCGCCAACGACGAGTGCGTCTCCGTTTTGCCCGTTTACTGCTTCGACCCTAGGGAT 515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 491 AACTCCGCCAACGACGAGTGCGTCTCCGTTTTGCCCGTTTACTGCTTCGACCCTAGAGAT 550 Query 516 TACGGGAAATCCTCTTCCGGGTTCGACAAAACGGGGCCTTTTCGAGCCCAGTTTCTGATT 575 ||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 551 TACGGCAAGTCCTCTTCCGGCTTCGACAAAACGGGGCCTTTTCGTGCCCAGTTTCTGATT 610 Query 576 GAGTCCGTCTCGGAGCTCCGGAAGAATCTCCAAGCGAGAGGGTCGAATCTAGTTGTCCGT 635 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 611 GAGTCCGTTTCGGAGCTCCGGAAGAATCTCCAAGCCAGAGGGTCGAATCTAGTTGTCCGT 670 Query 636 GTAGGGAAACCTGAAGCTGTTTTGGTGGAATTGGCTAAGGAGATTGGAGCTGACGCGGTT 695 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 671 GTCGGGAAACCTGAAGCTGTTTTGGTGGAATTGGCTAAGGAGATTGGAGCTGACGCGGTT 730 Query 696 TATGCTCACAGGGAAGTGTCTCACGACGAGGTTAAAGCGGAAGGGAAGATAGAGACGGCG 755 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 731 TATGCTCACAGAGAAGTGTCTCACGACGAGGTTAAAGCGGAAGGGAAGATAGAGACCGCG 790 Query 756 ATGAAGGAGGAAGGCGTTGAAGTCAAGTATTTCTGGGGAAGCACTCTCTATCACTTGGAT 815 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 791 ATGAAGGAGGAAGGCGTTGAAGTCAAGTATTTCTGGGGAAGCACTCTCTATCATTTGGAT 850 Query 816 GATTTGCCCTTCAAAATTGAAGATTTGCCGTCAAATTACGGAGCTTTCAAGGATAAAGTC 875 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 851 GATTTGCCCTTCAAAATTGAAGACTTGCCGTCAAATTACGGAGCTTTCAAGGATAAAGTC 910 Query 876 CAGAAACTGGAGATTAGGAAGACAATCGCAGCGCTTGATCAATTGAAAAGCTTGCCCTCT 935 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 911 CAGAAATTGGAGATTAGGAAGACTATCGCAGCGCTTGATCAATTGAAAAGCTTGCCCTCT 970 Query 936 CGAGGAGACGTTGAGCTTGGCGATATTCCTTCTCTCCTTGATCTTGGCATTAGCCCCACT 995 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 971 CGAGGAGACGTTGAGCTTGGCGATATTCCTTCTCTCCTGGATCTTGGCATTAGCCCCACT 1030 Query 996 GCTAGAACCAGCCAGGAGGGGAAACCGACAATGGTTGGAGGAGAGACAGAGGCGTTGACT 1055 |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1031 CCTAGGACTAGCCAGGAGGGGAAACCGACAATGGTTGGAGGAGAGACAGAGGCGTTGACT 1090 Query 1056 AGACTAAAGAGCTTTGCAGCGGATTGTCAGGCTCGGTTGAGCAAGGGAAACCAGAAAGGA 1115 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1091 AGACTAAAGAGCTTTGCCGCGGATTGTCAGGCTCGGTTGAGCAAGGGAAACCAGAAAGGA 1150 Query 1116 GGCAACAACAGTGTCTTTGGTGCAAACTTCTCTTGCAAGATATCACCTTGGTTAGCCATG 1175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1151 GGCAACAACAGTGTCTTTGGTGCAAACTTCTCTTGCAAGATATCACCTTGGTTAGCCATG 1210 Query 1176 GGAAGCATCTCTCCTCGTTCCATGTTCGATGAGCTGAAGAAAACAATCTCTGCATCAACC 1235 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1211 GGAAGCATCTCTCCTCGTTCCATGTTCGATGAGCTGAAGAAAACAATCTCCGCATCAACC 1270 Query 1236 ACCACCACAACTCCAAGGAACGGACCGGGAGATACAGGACTCAACTGGTTAATGTATGAG 1295 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1271 ACCTCCACAACTCCAAGGAACGGACCGGGAGATACAGGACTCAACTGGTTAATGTATGAG 1330 Query 1296 TTGCTATGGAGGGATTTCTTCAGGTTTATAACCAAGAAATACAGCTCAGCGAAGACGCAG 1355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1331 TTGCTATGGAGGGATTTCTTCAGGTTTATAACCAAGAAATACAGCTCAGCGAAGACGCAG 1390 Query 1356 GTCGAGGCTGGTCCGGCTACAGCCTGTACCGGTGCCTTTGCTTAAACCTTTGAAAACTTT 1415 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1391 GTCGAGGCTGGTCCGGCTACAGCCTGTACCGGTGCCTTTGCTTAAACATTTGAAAACTTT 1450 Query 1416 CAGGTGACCGGAAAAGTTAGAACCCATTTGTTT-TTTGCCCTACTCTTGGTGTATGGTGA 1474 |||||||||||||||||||||| | | ||||| ||||||||||||| ||||||||||| Sbjct 1451 CAGGTGACCGGAAAAGTTAGAAGCGACCTGTTTCTTTGCCCTACTCT-GGTGTATGGTGG 1509 Query 1475 ATCTA-TTTACTATCTGGACAGGACTGAACTGCTCTCTTTTGAAACTTGAGTGTCTGGAG 1533 || || ||| ||||| |||||||||| ||||||||||||||||||||||||||| |||| Sbjct 1510 AT-TAATTTGCTATCCGGACAGGACTTTACTGCTCTCTTTTGAAACTTGAGTGTCAGGAG 1568 Query 1534 AATGAATTCTAAGCTTCtttttttttttGCTCAATCAAGTTGTCCGTTCCCTGTTCTAA- 1592 ||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1569 AATAAAATCTAAGCTTCTTTTTTTG---GCTCAATCAAGTTGTCCGTTCCCTGTTCTAAA 1625 Query 1593 CATTTCGGATACTCATTCCATAAAAAGTCTCTAGAATTTGAGACGCTCTCCTTTGCGGTT 1652 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 1626 CATTTCGGATACTCATTCCATAAAAAGTCTCTACAATTTGAGACGCTCTCCTTTGTGGTT 1685 Query 1653 TAAGACTTGAGAATGTATCTTAGAAAATATCTC-AAGTAGTTGTGTCTATGAATATTAAA 1711 |||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| Sbjct 1686 -AAGACTTGAGAATGTATCTTAGAAAATAAC-CGAAGTAGTTGTGTCTATGAATATTAAA 1743 Query 1712 TTCAGGAATAT 1722 ||||||||||| Sbjct 1744 TTCAGGAATAT 1754 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85140124320 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5