BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483960
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47770.1 | Symbols: ATTSPO, TSPO | TSPO(outer membrane trypt... 1327 0.0
> AT2G47770.1 | Symbols: ATTSPO, TSPO | TSPO(outer membrane tryptophan-rich
sensory protein)-related | chr2:19568464-19569507
FORWARD LENGTH=1044
Length=1044
Score = 1327 bits (718), Expect = 0.0
Identities = 935/1032 (91%), Gaps = 45/1032 (4%)
Strand=Plus/Plus
Query 38 TATCCAAAAAC--AAAACAATTATTTAACATTCCACGTGTACACATCAGTCGCCACGTGT 95
|||| |||||| |||||||||| ||| ||||| ||||||||| |||| ||||||||||
Sbjct 27 TATCTAAAAACAAAAAACAATTAATTAGCATTCGACGTGTACATATCACTCGCCACGTG- 85
Query 96 CTCTCCATCACCAGAGCCTTGGCCTCTTTGCTTCTTCTTC---TCTATTAATATCATCAT 152
| | || ||||||||||||| |||||||||||||| |||||| | || |||||
Sbjct 86 ---T--A-CA--AGAGCCTTGGCCTTTTTGCTTCTTCTTCTTGTCTATT-A-AT-ATCAT 134
Query 153 CTCCTGATTATA--CTCTTCTGACCAAGCTGCTTCTTCAACTTCT-T-CTCCATCTCAAA 208
|||||||||||| ||||| |||||||||||||||||| | ||| | | |||||||||
Sbjct 135 CTCCTGATTATACTCTCTTTTGACCAAGCTGCTTCTTCTCCATCTATCCAACATCTCAAA 194
Query 209 TTTCAATAATCTTGTTTCTTCG-TTCCTGTTTTGGACGTTTGTAATGGATTCTCAGGACA 267
| ||| |||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 195 TCTCAGTAATCTTGTTCCTTCGATT-CTGTTTTGGACGTTTGTAATGGATTCTCAGGACA 253
Query 268 TCAGATACCGTGGCGGAGACGACAGAGACGCTGCGACGACGGCTATGGCTGAGACAGAGA 327
|||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 254 TCAGATACCGCGGCGGAGACGACAGAGACGCTGCAACGACGGCTATGGCCGAGACAGAGA 313
Query 328 GGAAAAACGCTGACGACAACAAAGGAAAACGCGATCAAAAGAGGGCCATGGCGAAACGCG 387
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 314 GGAAAAGCGCTGACGACAACAAAGGAAAACGCGATCAAAAGAGGGCGATGGCGAAACGTG 373
Query 388 GTCTCAAATCTCTGACGGTAGCGGTTGCGGCTCCTGTGCTCGTGACGCTCTTCGCCACGT 447
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 374 GTCTCAAGTCTCTGACGGTAGCGGTTGCGGCTCCTGTGCTCGTGACGCTCTTCGCTACGT 433
Query 448 ATTTCCTCGGCACAAGCGACGGCTACGGGAATCGAGCTCGGTCGTCGTCGTGGATCCCAC 507
|||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 434 ATTTCCTCGGCACAAGCGACGGATACGGGAATCGAGCTAAGTCCTCGTCGTGGATCCCAC 493
Query 508 CTCTGTGGCTCCTACACACCACGTGTCTCGCGTCGAGCGGTCTGATGGGATTGGCTGCGT 567
||||||||||||||||||| ||||||||||| || || ||||||||||| ||||||||||
Sbjct 494 CTCTGTGGCTCCTACACACAACGTGTCTCGCTTCTAGTGGTCTGATGGGTTTGGCTGCGT 553
Query 568 GGCTTGTATGGGTCGACGGTGGCTTCCACAAGAAGCCCAATGCTCTGTATCTTTACTTGG 627
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 554 GGCTTGTATGGGTTGACGGTGGCTTCCACAAGAAGCCCAATGCTCTGTATCTTTACTTAG 613
Query 628 CTCAGTTTATGCTCTGTTTGGTTTGGGATCTGGTTACGTTCCGGGTCGGGTCGGGAATAG 687
|||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| |||
Sbjct 614 CTCAGTTTTTGCTCTGTTTGGTTTGGGATCCGGTTACGTTCCGCGTCGGGTCGGGAGTAG 673
Query 688 CCGGGCTTGCGGTGTGGTTGGGTCAATCAGCTGCGTTGTTCGGATGTTACAAGGCCTTTA 747
| |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 674 CGGGGCTTGCGGTGTGGTTGGGTCAATCGGCTGCGTTATTCGGATGCTACAAGGCCTTTA 733
Query 748 ATGAGATAAGTCCGGTCGCTGGTAATCTGGTAAAGCCGTGTTTGGCTTGGGCTGCATTTG 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 734 ATGAGATAAGTCCGGTCGCTGGTAATCTGGTAAAGCCGTGTTTGGCTTGGGCTGCCTTTG 793
Query 808 TAGCCGCTGTTAATGTAAAGCTTGCAGTCGCGTGAGATCTGTAAACGCCAC-C-ATG-T- 863
|||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |
Sbjct 794 TAGCCGCTGTTAATGTAAAGCTTGCAGTCGCGTGAGATCTGTAAACGCTATACGATGATG 853
Query 864 TT-GTAGAGTC--A-T-AT--GAGTGTTTTCTT-T-G-----GTTTTT-GTGATATATAC 908
|| |||||||| | | || |||||||| ||| | | |||||| |||||||||||
Sbjct 854 TTTGTAGAGTCTGAGTCATATGAGTGTTT-CTTGTTGTTTTTGTTTTTTGTGATATATAC 912
Query 909 -ATAAA-GATGTCATTGCGATCCAATGGTCTACTCATTGTGGAGTAATAGACATGAACAT 966
||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 913 CATAAAAGATGTCTTTGCGATCCAATGGTCTGGTCATTGTGGAGTAATAGACATGAACAT 972
Query 967 GATATACTTGAGAAATAATGTGATATGGTATAAGTTTTAAGCGTTGGTCTGAAATCAAAC 1026
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 973 GATATACTTGAGAAATAATGTGATATTGTAGAAGTTTTAAGCGTTGGTCTGAAATCAAAC 1032
Query 1027 AGTGAGATTCTT 1038
|||||||||||
Sbjct 1033 TGTGAGATTCTT 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5