BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483986 Length=2156 Score E Sequences producing significant alignments: (Bits) Value AT2G47940.1 | Symbols: DEGP2 | DEGP protease 2 | chr2:19617986-... 3234 0.0 > AT2G47940.1 | Symbols: DEGP2 | DEGP protease 2 | chr2:19617986-19622232 REVERSE LENGTH=2278 Length=2278 Score = 3234 bits (1751), Expect = 0.0 Identities = 2036/2164 (94%), Gaps = 57/2164 (3%) Strand=Plus/Plus Query 19 TCTCTCTCGCCGGCCGATATGGCCGTCTCCGTAGCAAACTGCAGCTTCTCCGTCCTCAAT 78 ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 51 TCTCTCTCGCCGGCCGATATGGCCGCCTCCGTAGCAAACTGCTGCTTCTCCGTCCTCAAT 110 Query 79 GCCTCCGTTAAACTTCAATCTTCATGCGTCTCCTCACCGTGGTGTTTCGTAG-CCGCATC 137 |||||||||||| |||||||||| | | |||||||||||||||||||||| | ||||||| Sbjct 111 GCCTCCGTTAAAATTCAATCTTCGTCCATCTCCTCACCGTGGTGTTTCGT-GTCCGCATC 169 Query 138 -TCAGAAGA-------AG--TCGTTGAATCTTAAGAGGAAATCGTCGAGGTCTGATTCAT 187 || | || || || | ||| ||||||||||||||||||||||||||||| Sbjct 170 GTC-GTTGACTCCCCGAGCTTCCTCCAATATTAAGAGGAAATCGTCGAGGTCTGATTCAC 228 Query 188 CATCTCCTATATTAAACCCAGAGACCCAGAAGAATTACCCAGGTAGAGTTCGAGATGATA 247 ||||||||||||||||||| || ||||||||||||||||||||||||||||||| | Sbjct 229 CATCTCCTATATTAAACCC--AG----AGAAGAATTACCCAGGTAGAGTTCGAGATGAAA 282 Query 248 GTCCCAATCCTCCTCAAAAAATGGCTTTCAAGGCCTTTGGGTCACCaaaaaaggagaaaa 307 || ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 283 GTTCCAATCCTCCTCAAAAAATGGCTTTCAAGGCTTTTGGGTCACCCAAAAAGGAGAAAA 342 Query 308 aaGAGCCTCTCTCTGATTTTAGTCGAGACCAACAGACTGATCCTGGCAAGATTCACGACG 367 ||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 343 AAGAGTCTCTTTCTGATTTTAGTCGAGACCAACAGACTGATCCTGCCAAGATTCACGATG 402 Query 368 CATCTTTTCTCAACGCTGTTGTCAAGGTTTATTGCACTCATACTGCGCCTGATTACTCCC 427 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 403 CATCCTTTCTCAACGCTGTTGTCAAGGTTTATTGCACTCATACTGCTCCTGATTACTCCC 462 Query 428 TCCCATGGCAGAAGCAAAGACAATTTACTAGCACTGGAAGGCATGttttttttATTCACA 487 ||||||||||||||||||| ||||||||||| ||||| | | | Sbjct 463 TCCCATGGCAGAAGCAAAGGCAATTTACTAGTACTGG-A---A-G--------------- 502 Query 488 TTGCTTTTATGATTGGAGATGGCAAGCTCTTGACTAATGCCCATTGTGTCGAACATGATA 547 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 503 -TGCTTTTATGATTGGAGATGGCAAGCTCTTGACCAATGCCCATTGTGTCGAACACGATA 561 Query 548 CACAGGTTAAAGTTAAGAGAAGGGGAGATGATCGAAAGTATGTGGCTAAGGTTTTAGTAA 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 562 CACAGGTTAAAGTTAAGAGAAGGGGAGATGATCGAAAGTATGTGGCTAAGGTTTTAGTTA 621 Query 608 GGGGTGTGGACTGTGACATAGCTTTGCTTTCCGTAGAAAGCGAGGATTTCTGGAAAGGAG 667 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 622 GGGGTGTGGACTGTGACATTGCTTTGCTTTCCGTAGAAAGCGAGGATTTCTGGAAAGGAG 681 Query 668 CTGAACCACTGCGGCTGGGCCATTTACCCCGCCTTCAGGATTCAGTAACTGTCGTGGGAT 727 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 682 CTGAACCACTACGGCTGGGCCATTTACCCCGCCTTCAGGATTCAGTTACTGTCGTGGGAT 741 Query 728 ATCCTCTTGGAGGAGATACAATCTCTGTTACAAAAGGGGTTGTATCACGTATAGAGGTAA 787 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 742 ATCCTCTTGGAGGAGATACAATCTCTGTTACAAAAGGGGTTGTATCACGTATAGAGGTAA 801 Query 788 CATCATATGCTCATGGATCATCTGACTTGCTTGGAATTCAAATCGACGCTGCAATAAATC 847 |||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 802 CATCTTACGCTCATGGATCATCCGACTTGCTTGGAATTCAAATCGACGCTGCTATAAATC 861 Query 848 CAGGGAATAGTGGTGGCCCTGCATTCAACGACCAGGGGGAATGTATTGGAGTAGCATTCC 907 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 862 CAGGGAATAGTGGTGGCCCTGCATTCAACGACCAGGGGGAATGTATTGGAGTAGCATTCC 921 Query 908 AGGTTTACAGATCCGAAGAAACTGAAAATATTGGATATGTAATTCCAACAACCGTTGTTT 967 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 922 AGGTTTACAGATCCGAAGAAACTGAAAATATTGGATATGTGATTCCAACAACCGTTGTTT 981 Query 968 CTCACTTTTTGACTGATTATGAGAGGAACGGAAAGTACACTGGTTACCCTTGCCTTGGAG 1027 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 982 CTCACTTTTTGACTGATTATGAGAGGAACGGAAAGTACACTGGTTACCCTTGCCTTGGAG 1041 Query 1028 TGTTGCTGCAGAAATTAGAAAATCCAGCTCTGCGGGAGTGCCTCAAAGTTCCTACAAATG 1087 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1042 TATTGCTGCAGAAATTAGAAAATCCAGCTCTGCGGGAGTGCCTCAAAGTTCCTACAAATG 1101 Query 1088 AGGGGGTACTGGTGCGAAGAGTTGAACCTACATCTGATGCAAGTAAAGTCCTGAAAGAGG 1147 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1102 AGGGGGTTCTGGTGCGAAGAGTTGAACCTACATCTGATGCAAGTAAAGTCCTGAAAGAGG 1161 Query 1148 GAGATGTGATTGTAAGTTTTGATGATCTACATGTGGGATGTGAAGGAACTGTACCCTTCC 1207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1162 GAGATGTGATTGTAAGTTTTGATGATCTACATGTGGGATGTGAAGGAACTGTACCCTTCC 1221 Query 1208 GATCCAGTGAACGCATTGCATTCCGTTATCTCATCAGTCAAAAATTTGCAGGTGATATCG 1267 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1222 GATCTAGTGAACGCATTGCATTCCGTTATCTCATCAGTCAAAAATTTGCAGGTGATATCG 1281 Query 1268 CTGAGCTTGGTATCATTAGAGCAGGAGAACATAAGAAAGTTCAAGTAGTTCTAAGACCAC 1327 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1282 CTGAGATTGGTATCATTAGAGCAGGAGAACATAAGAAAGTTCAAGTAGTTCTAAGGCCAC 1341 Query 1328 GAGTGCACCTGGTACCGTATCATATTGATGGAGGTCAACCATCATACATTATTGTTGCTG 1387 ||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| Sbjct 1342 GAGTGCACCTGGTACCGTACCATATTGATGGAGGTCAGCCATCATACATTATAGTTGCTG 1401 Query 1388 GTTTGGTGTTTACTCCGCTCTCAGAACCCCTGATAGAGGAGGAGTGTGAGGATACCATAG 1447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1402 GTTTGGTGTTTACTCCGCTCTCAGAACCCCTGATAGAGGAGGAGTGTGAGGATACCATAG 1461 Query 1448 GCTTGAAATTGTTAACAAAGGCACGCTACTCTGTGGCAAGGTTCAGAGGAGAACAAATCG 1507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1462 GCTTGAAATTGTTAACAAAGGCACGCTACTCTGTGGCAAGGTTCAGAGGAGAACAAATCG 1521 Query 1508 TCATCCTATCACAGGTCTTGGCAAATGAAGTAAACATCGGCTATGAGGACATGAATAACC 1567 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1522 TCATCCTATCACAGGTATTGGCAAATGAAGTAAACATCGGCTATGAGGACATGAATAACC 1581 Query 1568 AACAGGTCCTGAAGTTCAATGGAATTCCTATAAGAAACATCCATCACTTGGCACATCTCA 1627 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1582 AGCAGGTCCTGAAGTTCAATGGAATTCCAATAAGAAACATCCATCACTTGGCACATCTCA 1641 Query 1628 TTGACATGTGCAAAGATAAGTATCTCGTTTTTGAGTTTGAAGACAACTATGTTGCTGTGT 1687 |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 1642 TTGATATGTGCAAAGATAAGTATCTAGTTTTTGAGTTCGAAGACAACTATGTTGCTGTGT 1701 Query 1688 TGGAGAGAGAAGCTTCAAATTCTGCTTCCTTGTGCATCCTCAAAGATTATGGAATTCCCT 1747 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1702 TGGAGAGGGAAGCTTCAAATTCTGCTTCCTTGTGCATCCTCAAAGATTATGGAATTCCCT 1761 Query 1748 CGGAAAGATCTGCTGATCTGCTCGAGCCATATGTAGATCCAATAGATGACACCCAAGCGC 1807 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1762 CGGAAAGATCCGCTGATCTGCTCGAGCCATATGTTGATCCAATAGATGACACCCAAGCGC 1821 Query 1808 TTGACCAAGGTATTGGAGACAGCCCTGTGTCAAATCTGGAAATCGGCTTTGATGGACTGG 1867 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1822 TTGACCAAGGTATTGGAGACAGCCCTGTGTCAAATCTGGAAATCGGCTTTGATGGACTGG 1881 Query 1868 TGTGGGCATAAA-TGTTCAAAAAAGGCGTCCGCAGATGGAAGCCACAGAAAGCTCATACA 1926 |||||||||||| | ||| |||| ||||||||||||||||| |||| ||||||||||||| Sbjct 1882 TGTGGGCATAAAATATTCGAAAA-GGCGTCCGCAGATGGAAACCACTGAAAGCTCATACA 1940 Query 1927 GCTTCCCCGAATTTATGGGAAAGCTTTCAGCTTTATCCTCATTCAGAAGGTCTTGAGCTG 1986 ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||| Sbjct 1941 GCTTCCCCGAACATATGGGAAAGCTTTCAGCTTCATCCTCATTCATAAGGTCTTGTGCTG 2000 Query 1987 CTC---C--AA-GTTTAGTGAATTCTTTCTTC---A---AAACCTCTAGGGATTGAGTTT 2034 ||| | || |||||||||||||||||||| | ||||||||| ||||||||||| Sbjct 2001 CTCAAACTCAAAGTTTAGTGAATTCTTTCTTCTTTATTCAAACCTCTATGGATTGAGTTT 2060 Query 2035 AATAGAAAGTTTGCCATGAGAATGCTTGACCATTGTGTGCAGATGAATGTA--CTGCTAA 2092 ||||||||||| |||||||||||||| | ||||||||| |||||||||||| ||||||| Sbjct 2061 AATAGAAAGTTGGCCATGAGAATGCTCGGCCATTGTGTTCAGATGAATGTATACTGCTAA 2120 Query 2093 AAGCATTGCCAGAATCTTGACAAAAAGTCAACAAATTATGCAATGTCTGATTTTTTATGA 2152 ||||||||||||||||| ||||||| ||||||||||||| || ||||||||||| ||||| Sbjct 2121 AAGCATTGCCAGAATCTCGACAAAA-GTCAACAAATTATTCAGTGTCTGATTTTCTATGA 2179 Query 2153 GAAA 2156 |||| Sbjct 2180 GAAA 2183 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 106927160850 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5