BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484014 Length=906 Score E Sequences producing significant alignments: (Bits) Value AT2G01080.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1367 0.0 > AT2G01080.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:77888-79334 FORWARD LENGTH=1004 Length=1004 Score = 1367 bits (740), Expect = 0.0 Identities = 850/898 (95%), Gaps = 27/898 (3%) Strand=Plus/Plus Query 30 AGAGTGGAAAGGGAGAGGGAGCTTCCTGCTTTCACTTATTATGCCTCCTCCTCCTTCTAG 89 |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 111 AGAGTGAAAAGGGAGAGGGAGCTTCCTGCTTTCACTTACTATGCCTCCTCCTCCTTCTAG 170 Query 90 TTCTAG-GCCAGGCCTTAACGGAC-ATCCGATTGCTACTCAGAACCAGCAGCCGTATTAC 147 |||||| | |||| || ||||| | ||||||||||| ||||||||||||||||||||||| Sbjct 171 TTCTAGAG-CAGGTCTCAACGG-CGATCCGATTGCTGCTCAGAACCAGCAGCCGTATTAC 228 Query 148 CGGAGCTACTCATCGTCGTCGTCGGCGTCACTGAAGGGATGCTGCTGCTGCTTGTTCTTG 207 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 229 CGGAGCTACTCATCGTCGTCGTCGGCGTCGCTGAAGGGATGCTGCTGCTGCTTGTTCTTG 288 Query 208 CTGTTCGCGTTCCTGGCGCTGCTGGTACTGGCGGTGGTGCTCATAGTAATACTGGCGGTG 267 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 289 CTGTTCGCGTTCCTGGCGCTGCTGGTACTGGCGGTGGTGCTCATCGTAATACTGGCGGTG 348 Query 268 AAGCCGAAGAAGCCGCAGTTCGATCTGCAGCAAGTGGCAGTGGTGTACATGGGAATCTCA 327 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 349 AAGCCGAAGAAGCCGCAGTTCGATCTGCAGCAAGTGGCAGTGGTGTACATGGGGATCTCC 408 Query 328 AACCCAAGCGCTGTTCTGGATCCAACCACCGCCTCCCTCTCCCTCACCATCCGGATGCTC 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 409 AACCCAAGCGCTGTTCTGGATCCAACCACCGCCTCCCTCTCCCTCACCATCCGGATGCTC 468 Query 388 TTCACCGCCGTCAACCCAAACAAGGTCGGAATCAGGTACGGCGAGTCCAGCTTCACGGTG 447 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 469 TTCACCGCCGTCAACCCAAACAAGGTCGGAATCAGGTACGGTGAGTCCAGCTTCACGGTC 528 Query 448 ATGTACAAAGGCATGCCACTGGGGAGGGCGACGGTGCCTGGATTCTACCAGGATGCGCAC 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 529 ATGTACAAAGGCATGCCACTGGGGAGGGCGACGGTGCCTGGATTCTACCAGGATGCGCAC 588 Query 508 AGTAC-AAGGAATGTGGAGGCCACCATCTCCGTCGATAGAGTCAATCTTATGCAAGCCCA 566 ||||| || ||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 589 AGTACGAA-GAACGTTGAGGCCACCATCTCCGTCGACAGAGTCAATCTTATGCAAGCCCA 647 Query 567 CGCCGCCGATCTCGTCAGAGACGCTTCCTTAAACGACAGAGTGGAGCTCACAGTCCGCGG 626 ||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| Sbjct 648 CGCCGCCGATCTCGTCAGAGATGCTTCCTTGAACGACCGAGTGGAGCTCACAGTCCGCGG 707 Query 627 AGACGTGGGGGCTAAGATCCGAGTCATGAATTTCGATTCACCGGGAGTTCAGGTATCCGT 686 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 708 AGACGTGGGGGCTAAGATCCGAGTCATGAATTTCGATTCACCGGGTGTTCAGGTATCCGT 767 Query 687 GAATTGCGGGATAGGCATTAGTCCCAGAAAGCAAGCTCTCATTTACAAGCAATGTGGCTT 746 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 768 GAATTGCGGGATAGGCATTAGTCCCAGAAAGCAAGCTCTCATTTACAAGCAATGTGGCTT 827 Query 747 TGATGGCCTCAGCGTCTAATTCCAAAACTGTAACATAata-t-t-at-atatatat-TT- 800 |||||||||||||||||||||||||||||||||||||||| | | || |||||||| || Sbjct 828 TGATGGCCTCAGCGTCTAATTCCAAAACTGTAACATAATAATATTATTATATATATATTT 887 Query 801 GTACTGACTACTCCCA---G--------TTGCAAAAAA-GATCCAGCCAAACTGGTAAAG 848 |||||||||||||||| | |||||||||| ||||||||||||||||||||| Sbjct 888 GTACTGACTACTCCCAACTGCAGAGGAGTTGCAAAAAAAGATCCAGCCAAACTGGTAAAG 947 Query 849 AAATGGAACAAGATCATCCATCCTTCCCCTGCCTTTTTTGGAAAACTTTTGTTTCTAC 906 ||||| ||||||||| | |||||||||||||||||||||| ||| |||||||||||| Sbjct 948 AAATGTAACAAGATC--C-ATCCTTCCCCTGCCTTTTTTGGGAAATTTTTGTTTCTAC 1002 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44256283507 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5