BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484017
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01110.1 | Symbols: APG2, UNE3, PGA2, TATC | Sec-independent... 2135 0.0
> AT2G01110.1 | Symbols: APG2, UNE3, PGA2, TATC | Sec-independent
periplasmic protein translocase | chr2:83260-85229 REVERSE
LENGTH=1690
Length=1690
Score = 2135 bits (1156), Expect = 0.0
Identities = 1479/1622 (91%), Gaps = 74/1622 (5%)
Strand=Plus/Plus
Query 1 GAAAAGAAAAAGGATT-GG--GTTTTGG-AAATATCAAATGTGGGCAAGGAAACTCGACC 56
||||| |||||||||| || ||||||| ||||||||||||||||||| |||||||||||
Sbjct 1 GAAAAAAAAAAGGATTGGGTTGTTTTGGAAAATATCAAATGTGGGCAACGAAACTCGACC 60
Query 57 GGAACCAATCG---------T-----TCTCTTTGCAATTG-----CAA-AGCATACGATA 96
||||||||||| | |||||||||||||| ||| | |||||||||
Sbjct 61 GGAACCAATCGTTCCTTCTCTGAAGCTCTCTTTGCAATTGAAAATCAACAACATACGATA 120
Query 97 C----GA-G------C-AGAGATGGGCAGCACAAGCACCAGTTCTGCTCTTATCCACCAT 144
| || | | ||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 121 CGAGAGAGGATTCTTCGAGAGATGAGCAGCACAAGCACTAGTTCTGCTCTTATCCACCAT 180
Query 145 TTCCCCCTCACCACTCGCAACTTGGGTTCGCCTACAAAGCAGCGTCCTCCTTACGCTGTA 204
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 TTCCGCCTCACCACTCGCAACTTGGGTTCGCCTACAAAGCAGCGTTGTCCTTACGCTGTA 240
Query 205 AATTTCTGCAATTCGTGGAGGGAAGCTGGACTCCGATACTCTGTCACGCAACGCCGGAGC 264
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 ACTTTCTGCAATTCGTGGAGGGAAGCTGGACTCCGATACTCCGTCACGCAACGCCGGAGC 300
Query 265 AAAGGCTTT-GGCCGGGTGCCAGCTCTCGATGA-TA--ATT--CTGACGATTCACCAACC 318
||||||||| |||| |||| |||||||| |||| | ||| | || | ||| |||
Sbjct 301 AAAGGCTTTGGGCC-GGTGTCAGCTCTCAATGACGACGATTCACCAAC-AGAGACC-ACC 357
Query 319 CCCGGCGTTGGCTCTGCTGTAGAAGACAGACCACCAGATGCATCCGAAGACAGATCAAGT 378
||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct 358 CCCGGCGTTGGCTCTGCTGTAGAAGACAGACCACCAGATTCATCTGAAGATAGATCAAGT 417
Query 379 TCGGTCTATGAGTTTCTCTATCCCCGTAAAGAGGAGCTCCCTGATGACAAAGAAATGACT 438
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCGGTCTATGAGTTTCTGTATCCCCGTAAAGAGGAGCTCCCTGATGACAAAGAAATGACT 477
Query 439 ATTTTCGATCATCTCGAGGAGCTCCGGGAGAGAATATTCGTCTCTGTTTTGGCTGTGGGA 498
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 ATTTTCGACCATCTCGAGGAGCTCCGGGAGAGAATATTCGTCTCTGTTTTGGCTGTAGGA 537
Query 499 GCTGCAATCTTGGGATGCTTCGCCTTCTCCAAAGATCTTATTGTGTTTCTTGAAGCTCCT 558
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 538 GCTGCAATCTTGGGATGCTTCGCCTTCTCCAAAGATCTTATTGTCTTTCTTGAAGCTCCC 597
Query 559 GTCAAAACTCAGGGTGTACGCTTTCTGCAGCTTGCTCCTGGCGAATTTTTCTTCACAACT 618
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 598 GTCAAAACTCAGGGTGTACGGTTTCTCCAGCTTGCTCCTGGCGAATTTTTCTTCACAACT 657
Query 619 CTAAAGGTCTCGGGTTATTGCGGGCTTCTACTAGGGAGCCCAGTGATCCTGTATGAGATT 678
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTAAAGGTCTCCGGTTATTGCGGGCTTCTACTAGGGAGCCCAGTGATCCTGTATGAGATT 717
Query 679 ATAGCTTTTGTCCTTCCCGGTCTGACACGGGCTGAAAGAAGGTTTCTGGGGCCAATTGTC 738
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 718 ATAGCTTTTGTCCTTCCCGGTCTGACACGGGCTGAGAGAAGGTTTCTGGGGCCAATTGTA 777
Query 739 TTTGGTTCCTCCTTGCTCTTCTATGCTGGACTTGCCTTCTCCTACTGGGTTTTAACCCCT 798
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 778 TTTGGCTCCTCATTGCTCTTCTATGCTGGACTTGCTTTCTCCTACTGGGTTTTAACCCCT 837
Query 799 GCAGCCTTGAATTTCTTTGTGAATTACGCGGAAGGGGTGGTAGAATCTCTGTGGTCTATC 858
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 838 GCAGCCTTGAATTTCTTTGTGAATTACGCTGAAGGTGTGGTAGAATCTCTGTGGTCTATC 897
Query 859 GACCAGTACTTTGAGTTTGTACTAGTGCTTATGTTCAGCACGGGCCTGTCTTTCCAGGTT 918
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 898 GACCAGTACTTTGAGTTTGTACTAGTGCTTATGTTCAGCACAGGCCTTTCTTTCCAGGTT 957
Query 919 CCAGTCATTCAGTTACTCCTGGGACAAGTAGGGGTGGTGTCGGGAGATCAAATGCTTTCA 978
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 958 CCAGTCATTCAGTTACTCCTGGGACAAGTAGGGGTTGTGTCGGGAGATCAAATGCTATCA 1017
Query 979 ATTTGGAGATATGTGGTGGTAGGTGCAGTGGTTGCAGCAGCTGTAGTCACACCCTCGACA 1038
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1018 ATTTGGAGATATGTGGTGGTAGGTGCGGTGGTTGCAGCAGCTGTTGTCACACCCTCGACA 1077
Query 1039 GACCCTGTCACTCAAATGCTCCTAGCAACACCGCTTCTGGGGCTCTACTTGGGTGGTGCA 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GACCCTGTCACTCAAATGCTCCTAGCAACACCGCTTCTGGGGCTCTACTTGGGTGGTGCA 1137
Query 1099 TGGATGGTCAAGCTCACAGGTCGGTGAGAAACTTAGTTGTTCAAAGAC-AAA-TAAATCA 1156
|||||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||
Sbjct 1138 TGGATGGTCAAGCTCACAGGTCGGTGAGAAACTTGGTTGTTCAGAGACGAAAATAAATCA 1197
Query 1157 TGTATCTTGTAGAGTATATCACACTTTCCGTGCATGAGACCACAGTTTGGTACCCAAAGT 1216
||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1198 TGTATCTTGTAGAGTATATCACACTTTCC----A-----CCACAGTTTGGTACCCAAAGT 1248
Query 1217 GTTTATCTGAA-CTTTATCTTCTTCGGATGTACAAATTTAGCAACCAAAAGA-AGCAACA 1274
||||||||||| ||| ||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 1249 GTTTATCTGAATCTTCATCTTCTTCATATGTACAAATTTAGCAACCAAAA-ACAGCAACA 1307
Query 1275 AGGTT-AAGGGGAGGGGTATTTATTGTCGATTATATGATTCATGATAATTCAGATTCT-G 1332
||||| ||||||||||| ||||||| || |||||||||| |||||||||||||||| | |
Sbjct 1308 AGGTTTAAGGGGAGGGGCATTTATTTTCTATTATATGATACATGATAATTCAGATT-TAG 1366
Query 1333 GAGATGAAAGGTCTAATCTTTAGATGCTGCAATGGCTGTGTGCGCTGCACTCCATGAAAG 1392
|||||||| | ||||||||||||||||||| |||||| |||| |||||| | |||||||
Sbjct 1367 GAGATGAATG-TCTAATCTTTAGATGCTGCGATGGCTTTGTGGGCTGCATTTCATGAAA- 1424
Query 1393 TGAAACATACAAGTGATTCCATATTCAAAATAATGAAGAAAATTCAAACTGGACCAGCAA 1452
|||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1425 -----CATACAAGTGATTCCATATTCAGAAGAATGAAGAAAATTCAAATTGGACCAGCCG 1479
Query 1453 GTAG-CAT-T-TATACGTCTTCGTGTGCAACACATGAG-CATAGTTGAGAGTATCAAGAG 1508
|| | ||| | ||||| |||||| ||||||||||| || ||||| |||||||||||||||
Sbjct 1480 GTTGGCATATATATACATCTTCGCGTGCAACACAT-AGGCATAGCTGAGAGTATCAAGAG 1538
Query 1509 CAAGAGACCACAATCCTGGTAACTACAAGATGAAGATATGATTATGACGCTGCAGAGGGA 1568
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1539 CAAGAGACCACAATCCTGGTAACTACAAGCTGAAGATATGATTAAGACGCTGCAGAGGGA 1598
Query 1569 AG 1570
||
Sbjct 1599 AG 1600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78363050745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5