BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484022 Length=670 Score E Sequences producing significant alignments: (Bits) Value AT2G01150.1 | Symbols: RHA2B | RING-H2 finger protein 2B | chr2... 691 0.0 > AT2G01150.1 | Symbols: RHA2B | RING-H2 finger protein 2B | chr2:100649-101495 FORWARD LENGTH=847 Length=847 Score = 691 bits (374), Expect = 0.0 Identities = 613/716 (86%), Gaps = 65/716 (9%) Strand=Plus/Plus Query 1 AATGGGACTACAAGGTCAGCTCTCCGACGTCTCCTCGGATTCGATACCTCTGATGCTACT 60 |||||||||||||||||||||||||||||| || || |||||||| || ||||||||||| Sbjct 54 AATGGGACTACAAGGTCAGCTCTCCGACGTGTCATCAGATTCGATCCCACTGATGCTACT 113 Query 61 GGCTCTCCTCGCCACTTTCTTCAGGCACGTCCGGTCTCTTCTCCTCCTCCCTTCTTCTGC 120 |||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 114 GGCTCTCCTCGCAACTTTCTTCAGACACGTCCGGTCTCTTCTCCTCTTCCCTTCTTCT-- 171 Query 121 CGCCCCCGTTGTTGTTGTTGTTTTTTCCTCAAACCTCAGCGTCCTCGCCGACCAGCTCAA 180 |||||| |||||||||| || | |||||||||||||||||||||||||||||||| Sbjct 172 -GCCCCC---GTTGTTGTTG---TTACTTCAAACCTCAGCGTCCTCGCCGACCAGCTCAA 224 Query 181 CCTAAATCGCCTCTTCTCGTACCGCTACTCCGACAACGCAGCCTCCGACTGCATCGTGTG 240 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 225 CCTAAATCGCCTCTTCTCGTACCGCTACTCCGACAACGCAGCCTCTGACTGCATCGTGTG 284 Query 241 CCTGTCTTCACTCAAGACCGGAGAACAAGTGAGGAAGCTCGATTGCAGACACGTCTTCCA 300 |||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 285 TCTGTCTAAACTCAAGACCGGAGAAGAAGTGAGGAAGCTAGATTGCAGACACGTCTTCCA 344 Query 301 TAAGCAGTGTTTGGAAGGTTGGCTTCAACATCTCAACTTCAATTGCCCGCTCTGTAGATC 360 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 345 TAAGCAGTGTTTGGAAGGCTGGCTTCAACATCTCAACTTCAATTGCCCGCTCTGTAGATC 404 Query 361 TCCACTGCTACCtcatcatcatcatc-atcatGGCAGTGATACGGCGATCTCAGCCTTCC 419 |||| ||||||||||||||||||| | |||||||||||| || ||||||||||||||| Sbjct 405 TCCATTGCTACCTCATCATCATCAGGGA-CATGGCAGTGATGCGTCGATCTCAGCCTTCC 463 Query 420 CTCTTCGCTCT-CAT-T---G-AT--T---ATT--TTT--ATGTGAACAaagaagaaaga 464 ||||||||||| | | | | || | ||| ||| ||||||| |||||||||||| Sbjct 464 CTCTTCGCTCTACCTCTACTGCATCATCTCATTGATTTTTATGTGAAGAAAGAAGAAAGA 523 Query 465 a-a--g-a-gaga-a-gaagaTGGAGGGAGGATG-TTTTTGATCTCA-CGGCCCTTCTCC 515 | | | | |||| | |||||||||||||||||| ||||| || | | | || |||||| Sbjct 524 AGAAAGCAAGAGAGAAGAAGATGGAGGGAGGATGCTTTTTTATTT-ATCTTCC-TTCTCC 581 Query 516 TCTTTCCtttttttAGGAAAAGAATATTATTTCTTACTA-A-A-GCT-G---CAGATTG- 567 |||||||||||| |||| |||| | ||||||||||||| | | | | | | || Sbjct 582 TCTTTCCTTTTT--AGGAGAAGATTCTTATTTCTTACTACAGAAGATTGATTCTTCTTAT 639 Query 568 AT-TCT-TCatatata---t-ctatat--a--tat-TTTT-GAGGAATCTCAGATCGGA- 614 || ||| | ||||||| | |||||| | ||| |||| |||||||||||||||||| Sbjct 640 ATATCTAT-ATATATAACCTTCTATATTTAGCTATGTTTTTGAGGAATCTCAGATCGGAA 698 Query 615 GAGAGGTCCTTTTGTTTTTCAGATTTCCGCATGCAGTGTAAATTCTTAATATGAAA 670 |||||||||||||||||||||||||||| | | | |||||||||||| ||||||| Sbjct 699 GAGAGGTCCTTTTGTTTTTCAGATTTCCAC-T-C--TGTAAATTCTTAGTATGAAA 750 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32401024815 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5