BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484037
Length=1643
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01260.1 | Symbols: | Protein of unknown function (DUF789) ... 1934 0.0
AT1G15030.1 | Symbols: | Protein of unknown function (DUF789) ... 425 5e-118
> AT2G01260.1 | Symbols: | Protein of unknown function (DUF789)
| chr2:135244-137806 REVERSE LENGTH=1662
Length=1662
Score = 1934 bits (1047), Expect = 0.0
Identities = 1460/1644 (89%), Gaps = 89/1644 (5%)
Strand=Plus/Plus
Query 1 CCCttttttttGAAATTCCCAAATCTCTCTCCATTTCGGCGAATCTCTCCTTTCTTGGGA 60
||| ||||||||||||| ||||||||||||||||||| ||||| ||| | ||||| ||
Sbjct 6 CCCCTTTTTTTGAAATTACCAAATCTCTCTCCATTTCAGCGAA--TCT-C-TTCTTCAGA 61
Query 61 TTTTTTCCTCTTCCACTAATATGTTTGCCAGTTTAATCGGAGCTTAGATATCATCATCAG 120
|||||||||||||||||| | |||||| ||||||||||||||||| || ||||||||
Sbjct 62 --TTTTCCTCTTCCACTAATCT-TTTGCCTGTTTAATCGGAGCTTAG--AT-ATCATCAG 115
Query 121 GAGCCTTTTTTGTTCTATCAATTCGT-CTTCCTTGGATCCATTTTTCCCCCTTTCTTTCT 179
|| |||||||||||||||||| | |||| || ||||||||||| ||| |||||
Sbjct 116 AAG--GTTTTTGTTCTATCAATTC-TCCTTCATTCGATCCATTTTT-ACCC---CTTTC- 167
Query 180 TGGAATTGGAATCTCCGATTCGACCAAGCTTCTTCGCCGTCTCATCGGAGACAGACACAT 239
| |||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 168 T----TTGGAATCTCCGATTCGACCAAGCTTCTTCGCCGTCTCATCGGAGACA-A-ACA- 220
Query 240 GCTTATTCtttttttACGCAAAATCAACTAAATTGAA-CTtagatagatagatagataga 298
| ||||| |||| |||||||||||||| || |||||||||||| ||||||| |
Sbjct 221 -CATATTC-------ACGCTAAATCAACTAAATT-AAGCTTAGATAGATATATAGATATA 271
Query 299 tagatagatagGTCAAATCAACTACGAGGACTACTC---GATGTTGGGTGCTGGATTTCA 355
||| || | | || |||||||| |||||||| |||||||||||||||||||||
Sbjct 272 TAGGTA-A-A----AACTCAACTAC---GACTACTCGGAGATGTTGGGTGCTGGATTTCA 322
Query 356 GTTGACGCGAGGCCGACACGGCGACGATCCTTTCTACACTTGGGCAAAATCTCGCAGGGC 415
||||||| ||||| ||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 323 GTTGACGAGAGGCAGACACGGCGACGATCCTTTCTACACTTCCGCAAAAACTCGCAGGGC 382
Query 416 CAATCAGCGCATCGATCAGCTCCGGAGAGCTCAGAGCGACGTTTCTAACGGCCCCTCATC 475
|||||||||||||||||||||||| ||||||||||||||||| ||||||| || |||||
Sbjct 383 CAATCAGCGCATCGATCAGCTCCGTAGAGCTCAGAGCGACGTCTCTAACGTTCCATCATC 442
Query 476 AGCTCCGCATAAACAACATAAACTCCTTCCTAACCTTGTTGCCTCTGAGCCGTCCGCTTC 535
|||| | | | | |||||| | || | ||| |||||||||| ||
Sbjct 443 AGCT-C-C-TTCTCCGCATAAA-------C-AA-C-----AACTC-GAGCCGTCCGATTT 484
Query 536 GTCTTCGAGTAATCTAGATCGGTTTTTAGAGTCGGTCACACCATCCGTGCCGGCCCAGTT 595
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 485 ATCTTCCAGTAATCTAGATCGGTTTTTAGAGTCGGTCACACCATCCGTACCGGCTCAGTT 544
Query 596 TTTATCCAAGACATTGCTATGGGAAAGAAGAGCCGATGATGA-T-T-ATAAACCTGTGCC 652
||||||||||||||||||| | ||||||||||| |||||||| | | |||||| ||||||
Sbjct 545 TTTATCCAAGACATTGCTACGAGAAAGAAGAGCAGATGATGATTATAATAAACTTGTGCC 604
Query 653 TTACTTTGTGCTTGGAGATATATGGGACTCATTTGCTGAGTGGAGTGCTTACGGCACCGG 712
||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 605 TTATTTTGTGCTTGGTGATATATGGGACTCATTTGCAGAGTGGAGTGCTTACGGCACCGG 664
Query 713 AGTGCCTCTTGTTTTGAATAACAACAAGGATCGTGTTATCCAATACTATGTCCCCTCTTT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 665 TGTGCCTCTTGTTTTGAATAACAACAAGGATCGTGTTATCCAATACTATGTCCCTTCTTT 724
Query 773 GTCAGCCATTCAAATCTATGCTCATTCTCATGCCTTGAATTCTTCTCTTAAATCAAGGCG 832
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 725 GTCAGCCATTCAAATCTATGCTCATTCTCATGCCTTGGATTCATCTCTTAAATCAAGGCG 784
Query 833 TCCAGGTGATATTAGCGACAGCGATTTCCGGGATTCAAGTAGCGATGTTAGCAGCGATAG 892
||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 785 TCCTGGTGATAGTAGCGACAGTGATTTTCGGGATTCAAGTAGCGATGTTAGCAGCGATAG 844
Query 893 TGATTCTGAACAGGTTTCTGCTAGAGTAGACCGTATCTCATTGAGGG------AT---GA 943
|||||| || | ||||||||||||||||||| ||||||||||||||| || ||
Sbjct 845 TGATTCCGAGCGGGTTTCTGCTAGAGTAGACTGTATCTCATTGAGGGATCAACATCAGGA 904
Query 944 AGATTCATCCAGTGATGATGGCGAACCTTTAGGCTCTCAAGGTCGTTTGATGTTTGAGTA 1003
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 AGACTCTTCCAGTGATGATGGCGAACCTTTAGGCTCTCAAGGTCGTTTGATGTTTGAGTA 964
Query 1004 TCTTGAAAGAGACCTTCCATACATCCGTGAACCTTTGGCCGACAAGGTCTTTGATCTTGC 1063
|||||||||||||||||||||||||||||||||||| || || |||||||| || || ||
Sbjct 965 TCTTGAAAGAGACCTTCCATACATCCGTGAACCTTTTGCTGATAAGGTCTTGGACCTCGC 1024
Query 1064 AGCTCAGTTTCCCGAGCTGTTGACGCTGAAAAGCTGTGACTTACTTCCGTCAAGCTGGTT 1123
|||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1025 AGCTCAGTTTCCCGAGCTAATGACGCTGAGAAGCTGTGACTTACTTCGGTCAAGCTGGTT 1084
Query 1124 TTCTGTGGCATGGTACCCAATTTACAGAATACCCACAGGACCGACATTGAAGGACCTGGA 1183
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1085 TTCTGTTGCATGGTACCCAATTTACAGAATACCCACAGGACCGACACTGAAGGACCTGGA 1144
Query 1184 TGCTTGTTTCTTGACTTATCATTCCCTACACACACCTTCTGGAGGTAAAGCCAGTGCACA 1243
||||||||||||||| |||||||||||||||||| ||| ||||||| ||| ||||| |||
Sbjct 1145 TGCTTGTTTCTTGACGTATCATTCCCTACACACATCTTTTGGAGGTGAAGGCAGTGAACA 1204
Query 1244 ATCAATGAGCCTTATGCAGGCAAGGGAGAGTGAGAAGATGTCATTGCCTGTGTTTGGGCT 1303
|||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1205 ATCAATGAGCCTTACGCAACCAAGGGAGAGCGAGAAGATGTCATTGCCTGTGTTTGGGCT 1264
Query 1304 TGCTTCATACAAGTTCAGAGGTTCATTATGGACACCCATTGGGGGTTCGGAGCACCAGCT 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 TGCTTCATACAAGTTCAGAGGTTCATTATGGACACCCATTGGGGGTTCGGAGCACCAGCT 1324
Query 1364 CGTGAACTCTCTGTTCCAAGCCGCTGAGAAGTGGCTGCATTCTTGTCATGTGAGCCACCC 1423
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 1325 CGTGAACTCTCTGTTCCAAGCCGCTGACAAATGGCTGCATTCTTGTCATGTCAGCCACCC 1384
Query 1424 TGATTTCCTCTTCTTCTGCCGTCGCTGAGTAGGATATGAAGTTGTGAGGCACTTTGAGAG 1483
|||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||
Sbjct 1385 TGATTTCCTCTTCTTCTGCCGTCGTTGAGTAGGGTATGAAGTTGTGACGCACTTTGAGAG 1444
Query 1484 AGTTTTAAAAAGAAACTCAAAAACTGTTGATATGG-G--TTGTTGTCAGATTCAGGTTTA 1540
||||| |||||||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 1445 AGTTTCAAAAAGAAACTCAAAA-CTGTTGATATGGAGGGTTGTTGTCAGATTCAGGTTTA 1503
Query 1541 AAAG-GAGTTGAGTTTTATATCTGTAAGTTATATAGATAAA-CGAATTTTGTTTGGTCAG 1598
||| ||||||| |||||| ||||||||||||| |||||| ||||||||||||||||||
Sbjct 1504 AAAACGAGTTGATTTTTATGTCTGTAAGTTATA--GATAAAACGAATTTTGTTTGGTCAG 1561
Query 1599 CAGATAATGTATGTGAACCCTGGG 1622
| ||||||||||||||| ||||
Sbjct 1562 -A--TAATGTATGTGAACCGTGGG 1582
> AT1G15030.1 | Symbols: | Protein of unknown function (DUF789)
| chr1:5177529-5180049 FORWARD LENGTH=1645
Length=1645
Score = 425 bits (230), Expect = 5e-118
Identities = 429/521 (82%), Gaps = 30/521 (6%)
Strand=Plus/Plus
Query 942 GAAGATTCATCCAGTGATGATGGCGAACCTTTAGGCTCTCAAGGTCGTTTGATGTTTGAG 1001
|||||||| || |||||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct 934 GAAGATTCGTCTAGTGATGATGGCGAGCCTTTAAGCTCTCAAGGTCGTTTGATATTTGAG 993
Query 1002 TATCTTGAAAGAGACCTTCCATACATCCGTGAA-CCTTTGGCCGACAAGGTCTTTGATCT 1060
||||||||| | || ||||| ||| |||||||| ||||| ||||||||| | | ||| ||
Sbjct 994 TATCTTGAACGTGATCTTCCTTACGTCCGTGAACCCTTT-GCCGACAAGATGTCTGACCT 1052
Query 1061 TGCAGCTC-AG-TTTCCCGAGCTGTTGACGCTGAA-AAGCTGTGACTTACTTCCGTCAAG 1117
||| ||| || |||||||||||| |||||| || ||||||||| || ||||| |||||
Sbjct 1053 TGC--CTCTAGATTTCCCGAGCTGAAGACGCT-AAGAAGCTGTGATTTGCTTCCTTCAAG 1109
Query 1118 CTGGTTTTCTGTGGCATGGTACCCAATTTACAGAATACCCACAGGACCGACATTGAAGGA 1177
|||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 1110 CTGGTTTTCTGTGGCATGGTACCCAATTTACAAAATACCCACAGGACCGACACTCAAGGA 1169
Query 1178 CCTGGATGCTTGTTTCTTGACTTATCATTCCCTACACACACC-TTCTGGAGGTAAAGCCA 1236
|||||||||||||||||||| ||||||||||| |||||||| || | |||| || |
Sbjct 1170 TCTGGATGCTTGTTTCTTGACCTATCATTCCCTTCACACACCCTT-TCAAGGTCCAGGC- 1227
Query 1237 GTG-CA-CAA--TCAATGAGCCT-TA-TGCAGGCAAGGGAGAGTG---AGAAGATGTCAT 1287
|| || || || ||| | | | ||||| ||||||| |||| |||||||| |
Sbjct 1228 GTTACAACAGGGTCTATG--CATGTGGTGCAGCCAAGGGAAAGTGTTGAGAAGATGGAAC 1285
Query 1288 TGCCTGTGTTTGGGCTTGCTTCATACAAGTTCAGAGGTTCAT-TATGGACACCCATTGGG 1346
||||||| ||||| || || ||||||||||| |||||||| | |||||||| | ||||
Sbjct 1286 TGCCTGTCTTTGGTCTCGCCTCATACAAGTTGAGAGGTTC-TGTATGGACAAGCTTTGGT 1344
Query 1347 GGTTCGGAGC-ACCAGCTCGTGAACTCTCTGTTCCAAGCCGCTGAGAAGTGGCTGCATTC 1405
|| |||| || ||||||||| ||||||||| ||||||||||| || || |||||| |
Sbjct 1345 GGCTCGG-GCCACCAGCTCGCGAACTCTCTCTTCCAAGCCGCAGATAATTGGCTG-AGG- 1401
Query 1406 TTG--TCATGTGAGCCACCCTGATTTCCTCTTCTTCTGCCG 1444
||| ||| || | ||| ||||||||| |||||||||||||
Sbjct 1402 TTGCGTCAAGTCAACCATCCTGATTTCATCTTCTTCTGCCG 1442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81174281265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5