BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484044
Length=2428
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01320.3 | Symbols: | ABC-2 type transporter family protein... 3504 0.0
> AT2G01320.3 | Symbols: | ABC-2 type transporter family protein
| chr2:154131-158182 REVERSE LENGTH=2662
Length=2662
Score = 3504 bits (1897), Expect = 0.0
Identities = 2175/2305 (94%), Gaps = 36/2305 (2%)
Strand=Plus/Plus
Query 1 GTTTGGAGCCTTGGTTGGTTCTTACTTG-TACTTTGCTTCGTAC---------GGCTTTA 50
|||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1 GTTTGGAGCCTTGGTTGGTTCTTACTTGTTACTTTGCTTCGTACGGATTTGAAGGCTTTA 60
Query 51 CCTCACCGGAGCTTCCAAG--G-AGA--AGAC-GA--CACTGACACAGGGATATACAGAT 102
||||||||||||||||||| | ||| | || || ||||||||||||| ||||| ||
Sbjct 61 CCTCACCGGAGCTTCCAAGTAGAAGACGACACTGAGTCACTGACACAGGG--ATACAAAT 118
Query 103 TATGGCGCCTTTTGGCGGGAAATCTGTAGTGGATGCTGTTTCTGGCATCGGAGGGAATGG 162
||||||||||||||||||||||||| ||| ||| | ||||||||||||||||||||||||
Sbjct 119 TATGGCGCCTTTTGGCGGGAAATCTTTAGCGGACGTTGTTTCTGGCATCGGAGGGAATGG 178
Query 163 AGTTGGGC-GGGCTCTGGCTGCGGTGGCCGCCGCTCTGTTGGTCCGCCTCTTTGCTGGAC 221
||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 179 TGTT-GGCGGGGCTCTGGCTGCGGTGGCCGCCGCTCTGTTGGTCCGCCTCTTCGCTGGAC 237
Query 222 CCGGCATCGCCCTCTTACCTGAAAATGAAGCTGACGATGATTACGCTGAGACGGAAGACG 281
| |||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 238 CTGGCATCGCTCTCTTACCTGAAGACGAAGCTGAAGATGATTACGCTGAGACGGAAGACG 297
Query 282 GTGGTGGTGATTCTTCTCCGGGGAAAATTCGTCCGGTGACAATCCGTTGGAGGAACATCA 341
|||||||||| | | | |||||||||||||||||||||||||||||||||||
Sbjct 298 GTGGTGGTGA----T-T-C------AATTCGTCCGGTGACAATCCGTTGGAGGAACATCA 345
Query 342 CCTGCTCGCTCTCCGATAAGTCCTCCAAATCGGTGCGGTTTTTGTTGAAAAATGTCTCTG 401
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 346 CCTGCTCGCTCTCCGATAAGTCCTCCAAATCGGTGAGGTTTTTGTTGAAAAATGTATCCG 405
Query 402 GAGAAGCAAAACCTGGGAGGTTGCTAGCGATAATGGGTCCTTCTGGATCTGGGAAAACCA 461
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 406 GAGAAGCAAAACCTGGGAGGTTGCTAGCGATTATGGGTCCTTCTGGTTCTGGGAAAACAA 465
Query 462 CATTGCTCAATGTTTTAGCTGGACAGCTTAGTTCATCTCCACGTTTGCATTTGTCAGGTC 521
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 466 CATTGCTCAATGTTTTAGCAGGACAGCTTAGTTTATCTCCACGTTTGCATTTGTCAGGTC 525
Query 522 TCTTGGAGGTTAATGGGAAACCAAGCTCCAGCAGAGCTTATAAGCTTGCGTTTGTCAGAC 581
|||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||| ||||
Sbjct 526 TCTTGGAGGTTAATGGCAAACCGAGCTCTAGCAAAGCTTATAAGCTTGCGTTTGTGAGAC 585
Query 582 AGGAGGATCTCTTCTTCTCGCAGTTGACTGTCAGGGAAACACTTTCTTTCGCAGCCGAGC 641
|||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 586 AGGAGGATCTCTTCTTTTCTCAGTTAACTGTCAGGGAAACACTTTCTTTTGCAGCCGAGC 645
Query 642 TTCAGCTTCCGGAGATCTCTTCTCCTGAGCAGAGGGATGACTATGTGAACAACCTCTTGC 701
||||||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||
Sbjct 646 TTCAGCTTCCGGAGATCTCTTCTGCTGAGGAGAGGGATGAGTATGTCAACAACCTCTTGC 705
Query 702 TCAAACTTGGTCTGGTCAGCTGTGCAGATTCGTGTGTTGGCGATGCAAAAGTTCGTGGCA 761
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 706 TCAAACTTGGTCTGGTCAGCTGTGCAGATTCATGTGTTGGCGATGCTAAAGTTCGTGGGA 765
Query 762 TCAGCGGTGGAGAAAAGAAGCGGCTGTCACTTGCGTGTGAATTGATCGCTAGTCCCTCTG 821
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 TCAGCGGTGGAGAGAAGAAGCGGCTGTCACTTGCGTGTGAATTGATCGCTAGTCCCTCTG 825
Query 822 TCATATTTGCTGATGAACCCACAACTGGGCTTGATGCCTTCCAGGCTGAGAAAGTGATGG 881
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 826 TCATATTTGCTGATGAACCTACCACTGGGCTTGATGCCTTCCAGGCTGAGAAAGTGATGG 885
Query 882 AAACATTGCAAAAGCTTGCACAAGATGGACACACTGTGATCTGCTCCATTCACCAGCCTA 941
| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 886 AGACATTGCAAAAGCTTGCACAGGATGGACATACTGTGATCTGCTCCATACACCAGCCTA 945
Query 942 GAGGTTCGGTGTATGCTAAATTTGACGACATTGTGTTACTTACAGAAGGAGCTTTAGTCT 1001
||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 946 GAGGTTCGGTGTACGCTAAATTTGACGACATTGTGTTACTTACAGAAGGAACTCTAGTCT 1005
Query 1002 ATGCCGGCCCTGCAGGAAAAGAACCTCTGACATATTTCGGGAACTTCGGGTTCCTTTGCC 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 ATGCCGGCCCTGCAGGAAAAGAACCTCTGACATATTTCGGGAACTTCGGGTTCCTTTGCC 1065
Query 1062 CAGAGCATGTAAACCCTGCTGAGTTTCTTGCTGATCTTATCTCTGTTGACTATAGCTCTT 1121
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1066 CTGAGCATGTGAACCCTGCTGAGTTTCTTGCTGATCTTATATCTGTTGACTATAGCTCTT 1125
Query 1122 CGGAAACTGTCTACTCTTCGCAGAAGAGAGTACATGCTCTTGTTGATGCGTTCTCCCAGC 1181
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1126 CGGAAACGGTCTACTCTTCGCAGAAGAGAGTACATGCTCTTGTTGATGCATTCTCCCAGC 1185
Query 1182 GTTCATCATCTGTTCTTTATGCTACTCCCCTCGGCATAAAAGATGAAACAAAGAACAGCA 1241
|||||||||| ||||||||||| ||||||||| |||| ||||| |||||||||||| |||
Sbjct 1186 GTTCATCATCGGTTCTTTATGCCACTCCCCTCAGCATGAAAGAAGAAACAAAGAACGGCA 1245
Query 1242 TGAGACCTCGCAGAAAAGCCTTTGTTGAGAGAAAAGATGGTTGGTGGAGGCAGTTTTTCT 1301
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1246 TGAGACCTCGCAGAAAAGCCATTGTTGAGAGAACAGATGGTTGGTGGAGGCAGTTTTTCT 1305
Query 1302 TGCTGCTTAAGCGTGCATGGATGCAGGCTTCTCGAGATGGGCCAACAAACAAAGTCCGTG 1361
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1306 TGCTGCTTAAACGTGCATGGATGCAGGCTTCTCGGGATGGGCCAACAAACAAAGTCCGTG 1365
Query 1362 CAAGAATGTCTGTTGCATCAGCTCTGATATTTGGGTCCGTTTTCTGGAGAATGGGGAAAT 1421
||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |
Sbjct 1366 CAAGAATGTCTGTTGCATCTGCTGTGATATTTGGGTCTGTTTTCTGGAGAATGGGGAAGT 1425
Query 1422 CCCAGACATCAATTCAGGACAGAATGGGTTTGCTTCAGGTTGCTGCAATAAACACGGCAA 1481
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 CTCAGACGTCAATTCAGGACAGAATGGGTTTGCTTCAGGTTGCTGCAATAAACACGGCAA 1485
Query 1482 TGGCAGCTCTCACAAAGACAGTTGGTGTCTTTCCTAAAGAGCGTGCCATTGTGGATAGAG 1541
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1486 TGGCAGCTCTTACAAAGACAGTTGGTGTCTTTCCTAAAGAGCGTGCCATAGTGGATAGAG 1545
Query 1542 AACGGTCCAAAGGGTCTTATTCTTTAGGCCCTTACCTGCTCTCCAAAACAATAGCTGAAA 1601
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 AACGATCCAAAGGGTCTTATTCTTTAGGCCCTTACCTGCTCTCCAAAACAATAGCTGAAA 1605
Query 1602 TTCCTATTGGAGCTGCATTTCCTTTGATGTTTGGTGCTGTACTATACCCCATGGCTCGCC 1661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 TTCCTATTGGAGCTGCATTTCCTTTGATGTTTGGTGCTGTACTATACCCCATGGCTCGCC 1665
Query 1662 TTAATCCCACTTTGTCAAGATTTGGAAAATTTTGTGGGATAGTGACTGTGGAGTCTTTTG 1721
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1666 TTAATCCCACTTTGTCAAGATTTGGAAAATTTTGTGGGATAGTGACTGTGGAGTCATTTG 1725
Query 1722 CTGCGTCTGCAATGGGTCTAACTGTTGGAGCTATGGTCCCAAGCACAGAAGCTGCAATGG 1781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1726 CTGCGTCTGCAATGGGTCTAACTGTTGGAGCTATGGTCCCAAGCACAGAAGCTGCAATGG 1785
Query 1782 CTGTAGGACCATCTCTCATGACAGTTTTCATCGTGTTTGGAGGTTACTATGTCAATGCAG 1841
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1786 CCGTGGGACCATCTCTCATGACAGTTTTCATCGTATTTGGAGGTTACTATGTCAATGCAG 1845
Query 1842 ACAACACCCCAATTATCTTCCGTTGGATTCCTCGTGCTTCATTGATCAGATGGGCCTTCC 1901
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1846 ACAACACCCCAATCATCTTCCGTTGGATTCCTCGTGCTTCATTGATCAGATGGGCCTTCC 1905
Query 1902 AGGGACTCTGCATCAACGAATTCAGCGGCCTCAAGTTTGATCATCAGAACACTTTTGACG 1961
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1906 AGGGACTCTGTATCAACGAATTCAGCGGCCTCAAGTTTGATCATCAGAACACTTTTGACG 1965
Query 1962 TCCAAACTGGAGAACAGGCGCTAGAACGACTGTCGTTTGGAGGAAGGCGTATAAGGGAGA 2021
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1966 TCCAAACTGGAGAACAGGCGCTAGAACGACTGTCGTTTGGAGGAAGGCGGATAAGGGAGA 2025
Query 2022 CGATAGCAGCTCAAAGCCGGATTCTGATGTTCTGGTATAGCGCAACGTACCTTCTCCTGG 2081
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2026 CGATAGCAGCTCAAAGCCGGATTCTGATGTTCTGGTATAGCGCCACGTACCTTCTCCTGG 2085
Query 2082 AGAAAAACAAGCCAAAGTATCAAAAGCTGGAGCTTCTTGTTGACAATGGAGAAACTGAG- 2140
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 2086 AGAAAAACAAGCCAAAGTATCAAAAGCTAGAGCTTCTTGTTGACAATGGAGAAACTG-GT 2144
Query 2141 AATCCAGGAGTGCAGCTGGATGAAGCAGAGGTTGATCAAGCGGAGGAACCTGAAGATGAT 2200
||| ||||||| || |||||| ||||||||||||||||| ||||| |||||||||| |||
Sbjct 2145 AATTCAGGAGTCCAACTGGATAAAGCAGAGGTTGATCAAACGGAGAAACCTGAAGACGAT 2204
Query 2201 GATATCAAGCAGCCACTTAAGGATCAAAATCAAGCATCGGATTCGGAAGATGAGCTTGAC 2260
|||||||| || |||||| | |||||||||||| ||||||||||||| ||||||||||||
Sbjct 2205 GATATCAATCAACCACTTGACGATCAAAATCAAACATCGGATTCGGATGATGAGCTTGAC 2264
Query 2261 GAAATCCGTCCCTTTGTCCTTGAAG 2285
|||||||||||||||||||| ||||
Sbjct 2265 GAAATCCGTCCCTTTGTCCTCGAAG 2289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120581709090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5