BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484071
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01540.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 989 0.0
> AT2G01540.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr2:242123-243493 REVERSE LENGTH=977
Length=977
Score = 989 bits (535), Expect = 0.0
Identities = 620/658 (94%), Gaps = 18/658 (3%)
Strand=Plus/Plus
Query 103 AAATGGATCAGAAA-CCTCTTGGCTTGCTCACGATCCACATCAA-ACGAGGGATTAATCT 160
|||||||||| ||| |||||||| ||||||||||||||| |||| | |||||||||||||
Sbjct 259 AAATGGATCA-AAAGCCTCTTGGATTGCTCACGATCCACGTCAAGA-GAGGGATTAATCT 316
Query 161 CGCCATTCGCGACCATCGTAGCAGCGATCCTTACATCGTTCTCACCGTCGCCGATCAGAC 220
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 317 CGCCATTCGCGACCATCGTAGCAGCGATCCTTACATCGTTCTCAACGTCGCCGATCAGAC 376
Query 221 ATTGAAGACACGTGTGGTGAAAAGAAATTGTAACCCAGTATGGAATGAAGAAATGACTGT 280
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 377 ATTGAAGACACGTGTGGTGAAAAAAAATTGTAACCCAGTATGGAATGAAGAAATGACTGT 436
Query 281 TGCTATCAAAGATCCCAATGTCCCAATCCGCTTGACAGTGTTTGATTGGGACAAGTTCAC 340
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TGCTATCAAAGATCCTAATGTCCCAATCCGCTTGACAGTGTTTGATTGGGACAAGTTCAC 496
Query 341 AGGAGATGACAAAATGGGAGATGCAAACATTGACATCCAACCATACTTGGAGGCTCTCAA 400
|||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||| | ||
Sbjct 497 AGGAGATGACAAAATGGGAGATGCGAACATAGACATTCAACCATACTTAGAGGCTTTGAA 556
Query 401 AATGGGGATGGAGCTTTTGAGGCTACCTAATGGATGTGCTATCAAAAGGGTTCAACCATC 460
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 557 AATGGGGATGGAGCTTTTGAGGCTACCTAATGGGTGTGCTATCAAAAGGGTTCAACCATC 616
Query 461 AAGGCACAATTGTTTATCAGATGAGAGTAGCATTGTTTGGAACAATGGTAAGATTACGCA 520
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 617 AAGGCACAATTGTTTATCTGATGAGAGTAGCATTGTTTGGAACAATGGTAAGATCACACA 676
Query 521 AGACATGATCCTTAGACTTAACAATGTCGAATGCGGCGAGATTGAGATCATGCTTGAATG 580
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 677 AGACTTGATCCTTAGACTTAACAATGTCGAATGTGGCGAGATTGAGATCATGCTTGAATG 736
Query 581 GCATGAAGGTGCTGGTTGCAGAGGTATCACTTCTTCCTCTACCAAAGGTGG---CTCTTC 637
||||||||||||||||||||||||||||||||| || | | |||||||||| ||||||
Sbjct 737 GCATGAAGGTGCTGGTTGCAGAGGTATCACTTCCTC-T-T-CCAAAGGTGGAGGCTCTTC 793
Query 638 CTCTACCTGAACTTATTATTGttctttctttctttctttctttcttttgttgttgtgtat 697
|||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 794 CTCTACCTAAACTTATTATTGTTCTTTCTTTCTTTCTTT-TTT-T---GTTGTTGTGTAT 848
Query 698 ggtgaatctgttgttgttgtttcCATATGTATAAGCAACTCAAGTATGTTTTCTTGAT 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 C---AATCTGTTGTTGTTGTTTCCATATGTATAAGCAACTCAAGTATGTTTTCTTGAT 903
Score = 86.1 bits (46), Expect = 5e-16
Identities = 58/63 (92%), Gaps = 4/63 (6%)
Strand=Plus/Plus
Query 1 GAGCAATTGGGAGA-GAGAACGTGTTGAATAGTTGGGGACGAGAA-AGCAAGCACCAATT 58
|||||||||||| | ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 107 GAGCAATTGGGA-ACGAGAACGTGTTGAATAGTTGGGGACGAGATTA-CAAGCACCAATT 164
Query 59 CAT 61
|||
Sbjct 165 CAT 167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37977015132
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5