BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484073 Length=2133 Score E Sequences producing significant alignments: (Bits) Value AT2G01570.1 | Symbols: RGA1, RGA | GRAS family transcription fa... 2569 0.0 AT1G14920.1 | Symbols: GAI, RGA2 | GRAS family transcription fa... 1122 0.0 > AT2G01570.1 | Symbols: RGA1, RGA | GRAS family transcription factor family protein | chr2:255249-257550 REVERSE LENGTH=2302 Length=2302 Score = 2569 bits (1391), Expect = 0.0 Identities = 1664/1789 (93%), Gaps = 45/1789 (3%) Strand=Plus/Plus Query 145 AAATGAAGAGAGATCTTCATCAATTTCAAGGTCGATTGTCCAACCACGGGACTTCTTC-T 203 ||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| | Sbjct 205 AAATGAAGAGAGATCATCACCAATTCCAAGGTCGATTGTCCAACCACGGGACTTCTTCTT 264 Query 204 --TCATCATC-A--TCTAAAGATAAGATGATGATGGTGAAAAAAGAAGAAGACGGT---G 255 |||||||| | |||||||||||||||||||||||||||||||||||||||||| | Sbjct 265 CATCATCATCAATCTCTAAAGATAAGATGATGATGGTGAAAAAAGAAGAAGACGGTGGAG 324 Query 256 GTAACATGGATGATGAGCTTCTCGCTGTTTTAGGTTACAAAGTTAGGTCATCGGAGATGG 315 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 325 GTAACATGGACGACGAGCTTCTCGCTGTTTTAGGTTACAAAGTTAGGTCATCGGAGATGG 384 Query 316 CGGAGGTTGCTTTGAAACTCGAGCAATTAGAGACGATGATGGGTAATGTTCAAGAAGATG 375 |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 385 CGGAGGTTGCTTTGAAACTCGAACAATTAGAGACGATGATGAGTAATGTTCAAGAAGATG 444 Query 376 GTTTATCTCATCTCGCCACGGACACTGTTCATTATAATCCATCGGAGCTTTATTCTTGGC 435 |||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 445 GTTTATCTCATCTCGCGACGGATACTGTTCATTATAATCCGTCGGAGCTTTATTCTTGGC 504 Query 436 TTGATAATATGCTCTCTGAGCTTAA---TCCT-C-C-TCCGGCTG-GTTCCAACGGTTTA 488 ||||||||||||||||||||||||| |||| | | |||||| | |||| ||||||||| Sbjct 505 TTGATAATATGCTCTCTGAGCTTAATCCTCCTCCTCTTCCGGC-GAGTTCTAACGGTTTA 563 Query 489 GATCCGATTCTTCCTTCGCCGGAGATTGGTGGTTTTCCGGCTTCGGATTATGACCTCAAA 548 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 564 GATCCGGTTCTTCCTTCGCCGGAGATTTGTGGTTTTCCGGCTTCGGATTATGACCTTAAA 623 Query 549 GTCATTCCTGGTAACGCGATTTATCATCAGAATCAATTTCCGGCGATTGATTCTTCGTCT 608 |||||||| || ||||||| || | ||||| |||||||||||||||||||||||| Sbjct 624 GTCATTCCCGGAAACGCGA-TT-T-ATCAG------TTTCCGGCGATTGATTCTTCGTCT 674 Query 609 TCGTCGAATAATCAGAGCAAGCGTTTGAAATCATGCTCGAGTCCTGATTCAATGGTTACA 668 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 675 TCGTCGAATAATCAGAACAAGCGTTTGAAATCATGCTCGAGTCCTGATTCTATGGTTACA 734 Query 669 TCCACCTCGACGGCG-ACACAGATTGGTGGAGTCATCGGCACGACGGT----------A- 716 || || ||||||| | || ||||||||||||||||| || |||||||| | Sbjct 735 TCGACTTCGACGG-GTACGCAGATTGGTGGAGTCATAGGAACGACGGTGACGACAACCAC 793 Query 717 -ACTACAACGACGGCGGC---TGAGTCAACTCGTGCTGTTATCCTGGTTGACTCACAAGA 772 || |||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| Sbjct 794 CACGACAACGACGGCGGCGGGTGAGTCAACTCGTTCTGTTATCCTGGTTGACTCGCAAGA 853 Query 773 GAACGGTGTTCGTTTAGTTCACGCGCTTATGGCTTGTGCTGAAGCAATCCAGCAGAACAA 832 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 854 GAACGGTGTTCGTTTAGTCCACGCGCTTATGGCTTGTGCAGAAGCAATCCAGCAGAACAA 913 Query 833 TTTGACTCTAGCGGAAGCTCTTGTGAAGCAAATCGGATGCTTAGCTGTGTCACAAGCCGG 892 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 914 TTTGACTCTAGCGGAAGCTCTTGTGAAGCAAATCGGATGCTTAGCTGTGTCTCAAGCCGG 973 Query 893 AGCTATGAGAAAAGTCGCTACTTATTTCGCCGAAGCTCTT-GCACGGCGGATCTACCGCC 951 ||||||||||||||| |||||||| |||||||||||| || || |||||||||||||| | Sbjct 974 AGCTATGAGAAAAGTGGCTACTTACTTCGCCGAAGCT-TTAGCGCGGCGGATCTACCGTC 1032 Query 952 TCTCTCCGCCGCAGAATCAAATCGACCATTCTCTCTCCGATACTCTTCAGATGCACTTTT 1011 ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| Sbjct 1033 TCTCTCCGCCGCAGAATCAGATCGATCATTGTCTCTCCGATACTCTTCAGATGCACTTTT 1092 Query 1012 ATGAGACTTGTCCTTATCTTAAATTCGCTCACTTTACGGCGAATCAAGCGATTCTTGAAG 1071 | |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| Sbjct 1093 ACGAGACTTGTCCTTATCTTAAATTCGCTCACTTCACGGCGAACCAAGCGATTCTCGAAG 1152 Query 1072 CTTTTGAAGGTAAGAAGAGAGTTCATGTCATTGATTTTTCTATGAACCAAGGTCTTCAAT 1131 |||||||||||||||||||||| || ||||||||||| || ||||||||||||||||||| Sbjct 1153 CTTTTGAAGGTAAGAAGAGAGTACACGTCATTGATTTCTCGATGAACCAAGGTCTTCAAT 1212 Query 1132 GGCCTGCGCTTATGCAAGCTCTTGCGCTTCGAGAAGGAGGTCCTCCAACTTTCCGGTTAA 1191 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1213 GGCCTGCACTTATGCAAGCTCTTGCGCTTCGAGAAGGAGGTCCTCCAACTTTCCGGTTAA 1272 Query 1192 CCGGAATTGGTCCGCCGGCGCCGGATAATTCTGATCATCTTCACGACGTTGGCTGTAAAT 1251 ||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||||| Sbjct 1273 CCGGAATTGGTCCACCGGCGCCGGATAATTCTGATCATCTTCATGAAGTTGGTTGTAAAT 1332 Query 1252 TAGCTCAGCTTGCGGAGGTGATTCACGTTGAATTCGAATACCGTGGATTCGTCGCTAACA 1311 |||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1333 TAGCTCAGCTTGCGGAGGCGATTCACGTAGAATTCGAATACCGTGGATTCGTTGCTAACA 1392 Query 1312 GCTTAGCCGATCTTGATGCGTCGATGCTTGAACTTAGACCGAGTGAGACGGAAGCTGTTG 1371 ||||||||||||| ||||| ||||||||||| ||||||||||| || ||||||||||||| Sbjct 1393 GCTTAGCCGATCTCGATGCTTCGATGCTTGAGCTTAGACCGAGCGATACGGAAGCTGTTG 1452 Query 1372 CGGTGAACTCTGTTTTCGAGCTCCATAAACTCTTAGGTCGTCCCGGTGGGATAGAGAAAG 1431 |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 1453 CGGTGAACTCTGTTTTTGAGCTACATAAGCTCTTAGGTCGTCCCGGTGGGATAGAGAAAG 1512 Query 1432 TTCTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCACGGTGGTTGAGCAAGAATCGA 1491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1513 TTCTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCACGGTGGTTGAGCAAGAATCGA 1572 Query 1492 ACCATAACGGACCGGTTTTCTTAGACCGGTTTACTGAATCGTTACATTACTATTCGACTC 1551 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1573 ACCATAACGGACCGGTTTTCTTAGACCGGTTTACTGAATCGTTACATTATTATTCGACTC 1632 Query 1552 TGTTTGATTCGTTGGAAGGAGTTCCGAGTAGCCAAGACAAAGTCATGTCCGAAGTTTACT 1611 ||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||| Sbjct 1633 TGTTTGATTCGTTGGAAGGAGTTCCGAATAGTCAAGACAAAGTCATGTCTGAAGTTTACT 1692 Query 1612 TAGGGAAACAGATTTGCAATCTTGTGGCTTGTGAAGGTCCTGACCGGGTCGAGAGGCATG 1671 |||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| || | Sbjct 1693 TAGGGAAACAGATTTGTAATCTGGTGGCTTGTGAAGGTCCTGACAGAGTCGAGAGACACG 1752 Query 1672 AAACGCTGAGTCAATGGGGAAACCGGTTTGGTTCGTCCGGTTTTGCGCCGGCAAATCTCG 1731 ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| | Sbjct 1753 AAACGTTGAGTCAATGGGGAAACCGGTTTGGTTCGTCCGGTTTAGCGCCGGCACATCTTG 1812 Query 1732 GGTCTAACGCGTTTAAGCAAGCGAGTATGCTTTTGTCAGTGTATAATAGTGGCCAAGGTT 1791 ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 1813 GGTCTAACGCGTTTAAGCAAGCGAGTATGCTTTTGTCTGTGTTTAATAGTGGCCAAGGTT 1872 Query 1792 ATCGTGTGGAGGAGAATAATGGATGTTTGATGTTGGGTTGGCACACTCGCCCGCTCATTA 1851 ||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1873 ATCGTGTGGAGGAGAGTAATGGATGTTTGATGTTGGGTTGGCACACTCGTCCACTCATTA 1932 Query 1852 CCACCTCCGCTTGGAAACTCTCGACGGCGGCGCACTGAGTTTGACTCGA 1900 |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1933 CCACCTCCGCTTGGAAACTCTCGACGGCGGCGTACTGAGTTTGACTCGA 1981 Score = 287 bits (155), Expect = 3e-76 Identities = 209/233 (90%), Gaps = 11/233 (5%) Strand=Plus/Plus Query 1897 TCGAGTGAATTTGAGATTGAAATCAGTGGACCGGTGATGACATATGTTCGGACCCAGACC 1956 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 2007 TCGAGTGAATTTGAGATTGAGATCAGTGGACCGGTGATGACATATGTTCGGACCAAGACC 2066 Query 1957 AAAACCGAACTGAATCGAACCGGTTTGCCTTTTGTTTATTTTATTTATTTTCA--C-CT- 2012 ||||||||||||||||||||| ||||||||||||||||||||||||||||| | || Sbjct 2067 TAAACCGAACTGAATCGAACCGTTTTGCCTTTTGTTTATTTTATTTATTTTCGTTCACTT 2126 Query 2013 GTTTAAAATTCTTATATTTGAAATATCGTTTTCGTAGGTCATTTTTAAATTTATGCCTTT 2072 ||||||||||||||||| | ||||||||| ||||||||||||||| ||||||||||| Sbjct 2127 GTTTAAAATTCTTATAT---A--TATCGTTTTGGTAGGTCATTTTTAA-TTTATGCCTTT 2180 Query 2073 TTTGGGATCAATTTAAAATAGGCTGAGAATGTATTTATTAAAAAACTATGTTT 2125 || ||||||||||| ||||||||||| |||||||||||| ||| ||| ||| Sbjct 2181 TT-GGGATCAATTTTTAATAGGCTGAGTTTGTATTTATTAATAAATTATCTTT 2232 Score = 119 bits (64), Expect = 1e-25 Identities = 108/126 (86%), Gaps = 16/126 (13%) Strand=Plus/Plus Query 1 TGAATGATGATTGAAGTGGTAGTAGCAGTGAAAAAC-AAAGCAAT-C---CCC--ACCCA 53 |||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||| Sbjct 2 TGAATGATGATTGAAGTGGTAGTAGCAGTGAAAAACAAAAGCAATCCAATCCCAAACCCA 61 Query 54 TTTGCTCTTAAGATTCTTCCTTCTTCACATAAGAGAAGTCGCATGTCCCTTCTTCTTCTT 113 ||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||| Sbjct 62 TTTGCTCTTAAGATTCTTC-------ACATA-GAGAAGTCACATGTTCCTTCTTCTTCTT 113 Query 114 C-TTCA 118 | |||| Sbjct 114 CCTTCA 119 > AT1G14920.1 | Symbols: GAI, RGA2 | GRAS family transcription factor family protein | chr1:5149226-5151354 FORWARD LENGTH=2129 Length=2129 Score = 1122 bits (607), Expect = 0.0 Identities = 977/1156 (85%), Gaps = 24/1156 (2%) Strand=Plus/Plus Query 730 CGGCTGAGTCAACTCGTGC-TGTTATCCTGGTTGACTCACAAGAGAACGGTGTTCGTTTA 788 |||||||||||||||| || |||| ||||||||||||| || ||||||||||| ||| | Sbjct 637 CGGCTGAGTCAACTCG-GCATGTTGTCCTGGTTGACTCGCAGGAGAACGGTGTGCGTCTC 695 Query 789 GTTCACGCGCTTATGGCTTGTGCTGAAGCAATCCAGCAGA-ACAATTTGACTCTAGCGGA 847 |||||||||||| ||||||| |||||||| | ||| | | | ||| ||||| ||||||| Sbjct 696 GTTCACGCGCTTTTGGCTTGCGCTGAAGCTGTTCAG-AAAGAGAATCTGACTGTAGCGGA 754 Query 848 AGCTCTTGTGAAGCAAATCGGATGCTTAGCTGTGTCACAAGCCGGAGCTATGAGAAAAGT 907 |||||| |||||||||||||||| |||||| || || ||| |||||| ||||||||||| Sbjct 755 AGCTCTGGTGAAGCAAATCGGATTCTTAGCCGTTTCTCAAATCGGAGCGATGAGAAAAGT 814 Query 908 CGCTACTTATTTCGCCGAAGCTCTTGCACGGCGGATCTACCGCCTCTCTCCGCCGCAGAA 967 ||||||||| |||||||||||||| || |||||||| ||||| ||||||||| |||||| Sbjct 815 CGCTACTTACTTCGCCGAAGCTCTCGCGCGGCGGATTTACCGTCTCTCTCCGTCGCAGAG 874 Query 968 TCAAATCGACCATTCTCTCTCCGATACTCTTCAGATGCACTTTTATGAGACTTGTCCTTA 1027 || ||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 875 TCCAATCGACCACTCTCTCTCCGATACTCTTCAGATGCACTTCTACGAGACTTGTCCTTA 934 Query 1028 TCTTAAATTCGCTCACTTTACGGCGAATCAAGCGATTCTTGAAGCTTTTGAAGGTAAGAA 1087 ||| || ||||||||||| |||||||||||||||||||| ||||||||| |||| ||||| Sbjct 935 TCTCAAGTTCGCTCACTTCACGGCGAATCAAGCGATTCTCGAAGCTTTTCAAGGGAAGAA 994 Query 1088 GAGAGTTCATGTCATTGATTTTTCTATGAACCAAGGTCTTCAATGGCCTGCGCTTATGCA 1147 |||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| Sbjct 995 AAGAGTTCATGTCATTGATTTCTCTATGAGTCAAGGTCTTCAATGGCCGGCGCTTATGCA 1054 Query 1148 AGCTCTTGCGCTTCGAGAAGGAGGTCCTCCAACTTTCCGGTTAACCGGAATTGGTCCGCC 1207 ||||||||||||||| || |||||||| |||||||||||||||||||||||| || Sbjct 1055 GGCTCTTGCGCTTCGACCTGGTGGTCCTCCTGTTTTCCGGTTAACCGGAATTGGTCCACC 1114 Query 1208 GGCGCCGGATAATT-CTGATCATCTTCACGACGTTGGCTGTAAATTAGCTCAGCTT-GCG 1265 ||| |||||||||| | ||| ||||||| || ||||| ||||| | ||||| || || Sbjct 1115 GGCACCGGATAATTTC-GATTATCTTCATGAAGTTGGGTGTAAGCTGGCTCAT-TTAGCT 1172 Query 1266 GAGGTGATTCACGTTGAATTCGAATACCGTGGATTCGTCGCTAACAGCTT-AGCCGATCT 1324 |||| |||||||||||| || || ||| | ||||| || ||||||| ||| ||| ||||| Sbjct 1173 GAGGCGATTCACGTTGAGTTTGAGTACAGAGGATTTGTGGCTAACA-CTTTAGCTGATCT 1231 Query 1325 TGATGCGTCGATGCTTGAACTTAGACCGAGTGAGACGGAAGCTGTTGCGGTGAACTCTGT 1384 |||||| ||||||||||| |||||||| ||||||| ||| |||||||||| |||||||| Sbjct 1232 TGATGCTTCGATGCTTGAGCTTAGACCAAGTGAGATTGAATCTGTTGCGGTTAACTCTGT 1291 Query 1385 TTTCGAGCTCCATAAACTCTTAGGTCGTCCCGGTGGGATAGAGAAAGTTCTCGGCGTTGT 1444 ||||||||| || || ||||| || || || |||| ||| || || ||||| || || || Sbjct 1292 TTTCGAGCTTCACAAGCTCTTGGGACGACCTGGTGCGATCGATAAGGTTCTTGGTGTGGT 1351 Query 1445 GAAACAGATTAAACCGGTGATTTTCACGGTGGTTGAGCAAGAATCGAACCATAACGGACC 1504 ||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||| | || Sbjct 1352 GAATCAGATTAAACCGGAGATTTTCACTGTGGTTGAGCAGGAATCGAACCATAATAGTCC 1411 Query 1505 GGTTTTCTTAGACCGGTTTACTGAATCGTTACATTACTATTCGAC-TCTGTTTGATTCGT 1563 | |||||||||| ||||||||||| ||||| ||||| || ||||| | ||||||| |||| Sbjct 1412 GATTTTCTTAGATCGGTTTACTGAGTCGTTGCATTATTACTCGACGT-TGTTTGACTCGT 1470 Query 1564 TGGAAGGAGTTCCGAGTAGCCAAGACAAAGTCATGTCCGAAGTTTACTTAGGG-AAACAG 1622 ||||||| || |||||| | |||||||| |||||||| || |||||||| ||| |||||| Sbjct 1471 TGGAAGGTGTACCGAGTGGTCAAGACAAGGTCATGTCGGAGGTTTACTT-GGGTAAACAG 1529 Query 1623 ATTTGCAATC-TTGTGGCTTGTGAAGGTCCTGACCGGGTCGAGAGGCATGAAACGCTGAG 1681 || ||||| | ||||||||||||| || |||||||| || ||| | ||||||||| |||| Sbjct 1530 ATCTGCAA-CGTTGTGGCTTGTGATGGACCTGACCGAGTTGAGCGTCATGAAACGTTGAG 1588 Query 1682 TCAATGG-GGAAACCGGTTTGGTTCGTCC-GGTTTTGCGCCGGCAAATCTCGGGTCTAAC 1739 ||| ||| |||| |||||| || || | | || |||||| | ||| || | || || || Sbjct 1589 TCAGTGGAGGAA-CCGGTTCGGGTC-TGCTGGGTTTGCGGCTGCACATATTGGTTCGAAT 1646 Query 1740 GCGTTTAAGCAAGCGAGTATGCTTTTGTCAGTGTAT-AATAGTGGCCAAGGTTATCGTGT 1798 ||||||||||||||||||||||||||| | ||| | || | || | |||||||| || Sbjct 1647 GCGTTTAAGCAAGCGAGTATGCTTTTGGCTCTGT-TCAACGGCGGTGAGGGTTATCGGGT 1705 Query 1799 GGAGGAGAATAATGGATGTTTGATGTTGGGTTGGCACACTCGCCCGCTCATTA-CCACCT 1857 |||||||| | | || ||| | ||||||||||||||||| || |||||||| | |||||| Sbjct 1706 GGAGGAGAGTGACGGCTGTCTCATGTTGGGTTGGCACACACGACCGCTCAT-AGCCACCT 1764 Query 1858 CCGCTTGGAAACTCTC 1873 | |||||||||||||| Sbjct 1765 CGGCTTGGAAACTCTC 1780 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105772548315 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5