BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484136
Length=473
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02130.1 | Symbols: PDF2.3, LCR68 | low-molecular-weight cys... 665 0.0
> AT2G02130.1 | Symbols: PDF2.3, LCR68 | low-molecular-weight cysteine-rich
68 | chr2:539999-540634 FORWARD LENGTH=533
Length=533
Score = 665 bits (360), Expect = 0.0
Identities = 442/479 (92%), Gaps = 16/479 (3%)
Strand=Plus/Plus
Query 2 CACTTCTTTTGAAATCTCTCTCTAT--CTCT-AAAAATGAAGCTCTCTATGCGTTTGATC 58
||||||||| ||||||||||||||| |||| |||||||||||||||| ||||||| |||
Sbjct 37 CACTTCTTTCGAAATCTCTCTCTATCCCTCTCAAAAATGAAGCTCTCTGTGCGTTTTATC 96
Query 59 TCGGCTGTTC-TCATCATGTTCATGGTATTCGTCGCCACTGGGATGGGTCCAGTCACTGT 117
|| |||| || || || |||||||||||||| | ||||| ||||||||||||||||| ||
Sbjct 97 TCCGCTGCTCTTC-TCTTGTTCATGGTATTCATTGCCACAGGGATGGGTCCAGTCACCGT 155
Query 118 GGAGGCACGCACGTGTGAGTCAAAGAGCCATAGGTTCAAGGGTCCATGCGTGAGCACACA 177
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 156 GGAGGCACGCACGTGTGAGTCAAAAAGCCATAGGTTCAAGGGTCCATGTGTGAGCACACA 215
Query 178 CAACTGTGCAAACGTGTGCCACAACGAAGGCTTTGGCGGAGGTAAATGCCGTGGATTCCG 237
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 216 CAACTGTGCAAACGTGTGCCACAACGAAGGCTTCGGCGGAGGTAAATGCCGTGGATTCCG 275
Query 238 TCGTCGTTGCTACTGCACCAGACATTGCTGATCCATCCATTCTCATGACTCAA-TCTTTG 296
|||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |
Sbjct 276 TCGTCGTTGCTACTGCACAAGACACTGCTGATCCATCCATTCTCATGACTCAAATCTTCG 335
Query 297 ATCCATCGTC-GTGTGTTACTTCTTTCTTATCTAAATCTTCCGTACAGTACCATGTAGTA 355
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 336 ATCCATCGTCAGTGTGTTACTTCTTTCTTATCTAAATCTTCCGTACGGTACCATGTCGTA 395
Query 356 CCGTACATGAGTGTGTTCCTC-AATAAGTCTTTGGTGTTTTGTGTGTTTCCGGTTTTAAT 414
|||||||||||||| ||| || |||||||| ||||| || |||||||||||||||||||
Sbjct 396 CCGTACATGAGTGTTTTC-TCGAATAAGTCATTGGT-TT--GTGTGTTTCCGGTTTTAAT 451
Query 415 GTAATGTTAAATCAATGAATGGCTTTGTATTATACTATTGTATTATGGATCTCAATCTA 473
|||||||||||||||| ||||||||| || ||| ||||||||||||||||||||||||
Sbjct 452 GTAATGTTAAATCAATTAATGGCTTT-TA--ATA-TATTGTATTATGGATCTCAATCTA 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22504897856
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5