BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484143 Length=1201 Score E Sequences producing significant alignments: (Bits) Value AT2G02180.1 | Symbols: TOM3 | tobamovirus multiplication protei... 1720 0.0 AT1G14530.1 | Symbols: THH1 | Protein of unknown function (DUF1... 920 0.0 > AT2G02180.1 | Symbols: TOM3 | tobamovirus multiplication protein 3 | chr2:560864-563233 FORWARD LENGTH=1296 Length=1296 Score = 1720 bits (931), Expect = 0.0 Identities = 1075/1142 (94%), Gaps = 20/1142 (2%) Strand=Plus/Plus Query 16 AGAGAGTTCTTCATTATGTGTGTTCAAAATCTGAATCGAGAAGGAATCTGAATCGTTGTT 75 ||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||| || | Sbjct 54 AGAGAGTTC-TCATTATGTATATTCAAAATCTGAATCGAGAAGGAATCTGACTCG-TG-T 110 Query 76 AGATGAGAATCGGCGGCGTAGAGGTTGTGCGATTTGCGTCGGAGATGATGTCATCGTCAT 135 ||||||||||||||||||| |||||| | ||||||||| | || |||| || | | Sbjct 111 AGATGAGAATCGGCGGCGTCGAGGTTACGAAATTTGCGTC-G-GA-GATG--AT-G---T 161 Query 136 CGTCATCGTCTTCGTCTTCGTCGGCGGTGGAAATGTTGAATCTCAAGGAAGCTTCGAATT 195 || ||| |||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 162 CG---TCG---TCGTCTTCGTCGGCGGTGGAGATGTTGAATCTCAAAGAAGCTTCGAATT 215 Query 196 GGTGGTCAGACGTAAACGAGTCTCCGATTTGGCAGGATCGTATCTTCCATGTTCTCGCTG 255 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 216 GGTGGTCAGACGTAAACGAATCTCCGATTTGGCAGGATCGTATCTTCCATGTTCTCGCTG 275 Query 256 TTCTCTACGGAATCGTTTCCGTCGTTGCTGTGATTCAACTTGTGAGAATACAATTGAGAG 315 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 276 TTCTCTACGGAATCGTTTCCCTCGTTGCTGTGATTCAACTTGTGAGAATACAATTGAGAG 335 Query 316 TTCCTGAATATGGTTGGACTACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATG 375 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 336 TTCCTGAATATGGTTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATG 395 Query 376 GAGTTCGTGCTGTGGTGTTTGTCTTCAGAAGAAACGTGCAATTTATGCATCCAGAGATTC 435 |||||||||||||||||||||||||||| |||| || || |||||||| |||||||||| Sbjct 396 GAGTTCGTGCTGTGGTGTTTGTCTTCAGGCGAAATGTTCAGTTTATGCAACCAGAGATTC 455 Query 436 TGCAACATATCTTGCTTGATATTCCAAGTCTTGCTTTCTTCACCACCTATGCTCTTCTGG 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 456 TGCAACATATCTTGCTTGATATTCCAAGTCTTGCTTTCTTCACCACCTATGCTCTTCTGG 515 Query 496 TTCTCTTCTGGGCTGAAATTTACTATCAGGCGCGTGCAGTATCGACTGATGGACTGAGGC 555 |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 516 TTCTTTTCTGGGCTGAAATTTATTATCAGGCGCGTGCAGTATCGACTGATGGACTCAGGC 575 Query 556 CAAGCTTCTTCACAATAAATGCAGTTGTATATGTAGTTCAGATTGCTCTTTGGTTGGTTT 615 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 576 CAAGCTTCTTCACAATTAATGCAGTTGTATATGTAGTTCAGATTGCTCTATGGTTGGTTT 635 Query 616 TGTGGTGGAAGCCTGTTCGAATTATGATAATCCTATCTAAGATGTTCTTTGCAGGCGTTT 675 |||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| Sbjct 636 TGTGGTGGAAGCCTGTTCGAGTTATGGTAATCCTATCTAAGATGTTCTTTGCAGGTGTTT 695 Query 676 CATTGTTCGCTGCGCTTGGATTTTTACTTTATGGTGGAAGGCTTTTCTTAATGTTGCAAC 735 ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 696 CATTGTTCGCTGCCCTTGGATTTTTACTTTATGGTGGAAGGCTTTTCCTAATGTTGCAAC 755 Query 736 GATTTCCAGTAGAATCTAAAGGGCGGCGCAAAAAGCTGCAAGAGGTTGGTTACGTGACAA 795 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 756 GGTTTCCAGTAGAATCTAAAGGGCGGCGCAAAAAGCTGCAAGAGGTTGGTTACGTGACAA 815 Query 796 CCATATGCTTTACGTGTTTCCTCATCAGATGTATCATGATGTGCTTTGCTGCTTTTGATG 855 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 816 CCATATGCTTTACGTGTTTCCTCATCAGATGTATCATGATGTGCTTTGCTGCTTTCGATG 875 Query 856 AGGGGGCAAACCTTGATGTGTTAGATCATCCCATCCTCAACTTCATATATTACCTGTTGG 915 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 876 AGGGGGCAAACCTTGATGTGTTAGATCACCCCATCCTTAACTTCATATATTACCTGTTGG 935 Query 916 TAGAGATATTACCGTCCTCTCTGGTCCTGTTCATCTTGAGAAAGCTACCACCAAAACGAG 975 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 936 TAGAGATATTACCCTCCTCTCTGGTCCTCTTCATCTTGAGAAAGCTACCACCAAAACGAG 995 Query 976 GCATTACACAATACCATCAGATTCGCTGAAATGTAAAGACACGACAACTAATGATCGGAT 1035 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 996 GCATTACACAATACCATCAGATTCGCTGAAATGTAAAGGCACGACAACTAATGATCAGAT 1055 Query 1036 GAAGAAGACAAGACCATGTTTGTTATATGCTTTTCTGTATTCAATAGAGAGAAAAGCGTA 1095 |||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||| || Sbjct 1056 GAAGAAGACAAGACTATGGTTGTT-TATGCTTTTCTGTAATCAATAGAGAGAAAAGCATA 1114 Query 1096 AGATACAAATGAA-TAGATCTAAAGCTGGTAAGTCTTTTTGGTTGATGATGGGAATGAAT 1154 |||| ||||||| |||||||||||||| |||| | ||||||||||||||||||||| || Sbjct 1115 AGATGGAAATGAAATAGATCTAAAGCTGATAAGGCCTTTTGGTTGATGATGGGAATGGAT 1174 Query 1155 TC 1156 || Sbjct 1175 TC 1176 > AT1G14530.1 | Symbols: THH1 | Protein of unknown function (DUF1084) | chr1:4970858-4973726 REVERSE LENGTH=1454 Length=1454 Score = 920 bits (498), Expect = 0.0 Identities = 718/825 (87%), Gaps = 11/825 (1%) Strand=Plus/Plus Query 191 GAATTGGTGGTCAGACGTAAACGAGTCTCCGATTTGGCAGGATCGTATCTTCCATGTTCT 250 ||||||||||| || || || || |||||| | |||||||||||||||||||||||||| Sbjct 198 GAATTGGTGGTGGGATGTGAATGAATCTCCGGTGTGGCAGGATCGTATCTTCCATGTTCT 257 Query 251 CGCTGTTCTCTACGGAATCGTTTCCGTCGTTGCTGTGATTCAACTT-GTGAGAATACAAT 309 |||||||| || ||||||||||||||| |||||||||||||| || || |||||||||| Sbjct 258 TGCTGTTCTATATGGAATCGTTTCCGTCATTGCTGTGATTCAA-TTGGTAAGAATACAAT 316 Query 310 TGAGAGTTCCTGAATATGGTTGGACTACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTG 369 |||||||||| |||||||| ||||| ||||| ||||||||||| |||||||||||| | | Sbjct 317 TGAGAGTTCCAGAATATGGCTGGACGACGCAGAAGGTCTTTCATTTTCTCAATTTCATGG 376 Query 370 TTAATGGAGTTCGTGCTGTGGTGTTTGTCTTCAGAAGAAACGTGCA-A-TTTATGCATCC 427 |||| |||||||| ||| |||| ||| ||||| | || | |||| | ||||| || Sbjct 377 TTAACGGAGTTCGAGCTCTGGTTTTTCTCTTCCGGCGAGA--TGCACAGAACATGCAGCC 434 Query 428 AGAGATTCTGCAACATATCTTGCTTGATATTCCAAGTCTTGCTTTCTTCACCACCTATGC 487 ||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| Sbjct 435 AGAGATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACATATGC 494 Query 488 TCTTCTGGTTCTCTTCTGGGCTGAAATTTACTATCAGGCGCGTGCAGTATCGACTGATGG 547 |||||||||||||| ||||| || |||||||| ||||| ||||| |||||||||||||| Sbjct 495 GCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGGCACGTGCTGTATCGACTGATGG 554 Query 548 ACTGAGGCCAAGCTTCTTCACAATAAATGCAGTTGTATATGTAGTTCAGATTGCTCTTTG 607 |||||||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||| Sbjct 555 ACTGAGGCCAAGTTTCTTCACAATTAATGCAGTTGTATACGTAATTCAGATTGCTCTTTG 614 Query 608 GTTGGTTTTGTGGTGGAAGCCTGTTCGAA-TTATGATAATCCTATCTAAGATGTTCTTTG 666 |||||||||||||||||||||||||| | ||||| ||||| | |||||||||||||||| Sbjct 615 GTTGGTTTTGTGGTGGAAGCCTGTTC-ACCTTATGGTAATCATTTCTAAGATGTTCTTTG 673 Query 667 CAGGCGTTTCATTGTTCGCTGCGCTTGGATTTTTACTT-TATGGTGGAAGGCTTTTCTTA 725 |||| || |||||||| || || ||||| |||||| || ||||| |||||||||||| | Sbjct 674 CAGGTGTCTCATTGTTTGCGGCCCTTGGCTTTTTA-TTATATGGAGGAAGGCTTTTCCTG 732 Query 726 ATGTTGCAACGATTTCCAGTAGAATCTAAAGGGCGGCGCAAAAAGCTGCAAGAGGTTGGT 785 ||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| Sbjct 733 ATGCTGCAACGATTTCCAGTAGAGTCTAAAGGGCGGCGCAAGAAGCTACAAGAGGTTGGC 792 Query 786 TACGTGACAACCATATGCTTTACGTGTTTCCTCATCAGATGTATCATGATGTGCTTTGCT 845 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 793 TACGTGACAACCATATGCTTTACATGTTTCCTCATCAGATGTATCATGATGTGCTTTGAT 852 Query 846 GCTTTTGATGAGGGGGCAAACCTTGATGTGTTAGATCATCCCATCCTCAACTTCATATAT 905 || ||||| || | ||| | |||||||| ||||||||||| ||||| |||||||||||| Sbjct 853 GCGTTTGACGATGCAGCAGATCTTGATGTCTTAGATCATCCAATCCTAAACTTCATATAT 912 Query 906 TACCTGTTGGTAGAGATATTACCGTCCTCTCTGGTCCTGTTCATCTTGAGAAAGCTACCA 965 ||| ||||||| |||||||| || || ||||||||||| || ||| | |||||||| || Sbjct 913 TACTTGTTGGTGGAGATATTGCCATCGTCTCTGGTCCTCTTTATCCTAAGAAAGCTTCCG 972 Query 966 CCAAAACGAGGCATTACACAATACCATCAGATTCGCTGAA-ATGT 1009 |||||||| || || ||||| |||||||| || | |||| |||| Sbjct 973 CCAAAACGCGGTATCACACAGTACCATCAAATCCAATGAACATGT 1017 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58985640375 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5