BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484159
Length=1169
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02410.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1626 0.0
> AT2G02410.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF901 (InterPro:IPR010298);
Has 1151 Blast hits to 1151 proteins in 597 species:
Archae - 0; Bacteria - 1105; Metazoa - 0; Fungi - 0; Plants
- 42; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
| chr2:632640-634899 FORWARD LENGTH=1286
Length=1286
Score = 1626 bits (880), Expect = 0.0
Identities = 975/1018 (96%), Gaps = 17/1018 (2%)
Strand=Plus/Plus
Query 1 ATGATATTATCCACTAGTTTTATAGACTTTTC-AAAAAAGAAGA-AATGTTTTCAATTCT 58
|||||||||||||||||||||||||||||||| ||||||| ||| || |||||||||||
Sbjct 1 ATGATATTATCCACTAGTTTTATAGACTTTTCAAAAAAAGGAGAGAA--TTTTCAATTCT 58
Query 59 TCAGTAGTCAAATAGATGAAAACCGCCGGAGCGCCGCCGCATAGAGGTGG------TTCC 112
|||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 59 TCAGTAGTCAAATAGATGAAGACCGCCGGAGCGCCGCCGCAGAGAGGTGGTTCCTCTTCC 118
Query 113 TCCGCCG-C-T-TACTTTTACTGGTCTTCATCATCTTGCTCCTCCGATAGTTGTAGAGTT 169
||| ||| | | |||||| ||||||||||||||||||| || | |||||| |||||||||
Sbjct 119 TCCTCCGCCGTATACTTTAACTGGTCTTCATCATCTTGTTCTTACGATAGCTGTAGAGTT 178
Query 170 TTGGTGGTGAAGATGGGAGGAAAAAGCAAGAAGCCTCATCAATCTTCTTCTTTTAAGGTC 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTGGTGGTGAAGATGGGAGGAAAAAGCAAGAAGCCTCATCAATCTTCTTCTTTTAAGG-- 236
Query 230 CATTCAGAGCCAGAACCACCGAGAATCAAATCCAATGTTAAGCACAACTTGCAGCTTCTG 289
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 237 -AGTCAGAGCCAGAACCACCGAGAATCAAATCCAATGTTAAGCATAACTTGCAGCTTCTC 295
Query 290 AAGTTATGGAAGGAGTTTCAGAGCAGAGGATCTGGCATGGCTAAGCCAGCGACTAGTTAC 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AAGTTATGGAAGGAGTTTCAGAGCAGAGGATCTGGCATGGCTAAGCCAGCGACTAGTTAC 355
Query 350 AGGAAGAAGAAAGTAGAGAAAGACGAGTTACCGGATGATAGCGAGCTCTACCGGGATCCT 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AGGAAGAAGAAAGTAGAGAAAGACGAGTTACCGGATGATAGCGAGCTCTACCGGGATCCT 415
Query 410 ACAAATACGCTTTACTACACGAACCAAGGTCTATTGGATGATGCAGTTCCGGTTTTGCTT 469
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 416 ACAAATACGCTTTACTACACGAACCAAGGTCTATTGGATGACGCAGTTCCGGTTTTGCTT 475
Query 470 GTTGATGGTTATAATGTGTGTGGATATTGGATGAAGTTAAAGAAACATTTCATGAAAGGA 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GTTGATGGTTATAATGTGTGTGGATATTGGATGAAGTTAAAGAAACATTTCATGAAAGGA 535
Query 530 AGGCTTGATGTTGCTCGGCAGAAGTTAGTTGATGAACTTGTGTCCTTCAGTATGGTTAAA 589
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGGCTTGACGTTGCTCGGCAGAAGTTAGTTGATGAACTTGTGTCCTTCAGTATGGTTAAA 595
Query 590 GAGGTTAAGGTAGTGGTTGTGTTTGATGCTCTCATGTCTGGTCTCCCTACTCACAAGGAA 649
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 596 GAGGTTAAGGTAGTGGTTGTGTTTGATGCTCTCATGTCTGGTCTTCCTACTCACAAGGAA 655
Query 650 GATTTTGCAGGTGTTGATGTGATTTTCTCAGGAGAAACTTGCGCTGACGCTTGGATTGAA 709
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 656 GACTTTGCAGGTGTTGATGTGATTTTCTCAGGAGAAACTTGTGCTGACGCTTGGATTGAA 715
Query 710 AAGGAGGTGGTTGCATTGAGAGAAGATGGATGCCCCAAGGTTTGGGTTGTAACATCTGAT 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AAGGAGGTGGTTGCATTGAGAGAAGATGGATGCCCCAAGGTTTGGGTTGTAACATCTGAT 775
Query 770 GTCTGTCAACAACAAGCAGCACATGGAGCGGGAGCTTATATTTGGAGTAGCAAGGCACTG 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 776 GTCTGTCAACAACAAGCAGCACATGGAGCGGGAGCTTATATTTGGAGTAGCAAGGCATTG 835
Query 830 GTTTCTGAGATCAAATCAATGCATAAGGAGGTTGAGAGAATGATGCAAGAAACAAGGTCA 889
||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 836 GTTTCTGAGATTAAATCGATGCATAAGGAGGTTGAGAAAATGATGCAAGAAACAAGGTCA 895
Query 890 ACATCTTTCCAAGGGAGATTGCTGAAACACAATCTTGATTCTGAAGTCGTGGATGCTCTT 949
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 896 ACATCTTTCCAAGGGAGATTGCTTAAACACAATCTTGATTCTGAAGTCGTTGATGCTCTT 955
Query 950 AAAGATCTAAGAGACAAATTATCAGAAAACGAGACAAAGAGATGACAACAAGGACCAA 1007
|||||||| ||||||||||||||||||||||| ||||||||||||||| ||| |||||
Sbjct 956 AAAGATCTTAGAGACAAATTATCAGAAAACGAAACAAAGAGATGACAAAAAG-ACCAA 1012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57379222935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5