BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484166 Length=1081 Score E Sequences producing significant alignments: (Bits) Value AT2G02540.1 | Symbols: ATHB21, ZFHD4, HB21, ZHD3 | homeobox pro... 1474 0.0 AT1G14440.1 | Symbols: AtHB31, HB31, ZHD4 | homeobox protein 31... 279 3e-74 > AT2G02540.1 | Symbols: ATHB21, ZFHD4, HB21, ZHD3 | homeobox protein 21 | chr2:683647-685309 FORWARD LENGTH=1205 Length=1205 Score = 1474 bits (798), Expect = 0.0 Identities = 958/1031 (93%), Gaps = 27/1031 (3%) Strand=Plus/Plus Query 4 TTATTCTCAAGAAAAGTTTCATTTTAAGATAAAGTTTGCTGCTTTTTCTGGTTGTTAGAT 63 |||||||||||||| |||||||||| ||||||||||||||||| |||||||||| | ||| Sbjct 128 TTATTCTCAAGAAAGGTTTCATTTTGAGATAAAGTTTGCTGCTCTTTCTGGTTG-TGGAT 186 Query 64 AGATCAAGAGAATGGAGATTGCAAGTCAAGATGATCCTATTCCAATAAACACTAGTTACG 123 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 187 AGATCAAAAGAATGGAGATTGCAAGTCAAGAAGATCCTATTCCAATAAACACTAGTTATG 246 Query 124 GTAATAGTGGTGGTGGGCATGGGAACATGATCCATCATCTTCATCATCATCATGCCAATT 183 |||||||||| |||||||||||||||||| | | | ||||||||||||||||||| Sbjct 247 GTAATAGTGGAGGTGGGCATGGGAACATG----A--A-C--CATCATCATCATGCCAATT 297 Query 184 CTGCACCATCATCTCTCAACATGACTACTTCAAACCCACTACTAGTCTCCTCAAATGGTA 243 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 298 CTGCACCATCATCTCTCAACATTACTACTTCAAACCCACTACTAGTCTCCTCAAATAGTA 357 Query 244 ATGGTCTTGGCAAAAATCATGAACATTCTCATCATCATCATGTGGGTTACAACATCATGG 303 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 358 ATGGTCTTGGTAAAAATCATGATCATTCTCATCATCATCATGTGGGTTACAACATCATGG 417 Query 304 TCAGCAACAACAACATCAAGAAAGAGAAGCCTGTGGTGATCAAGTACAAGGAATGCCTAA 363 | || |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 418 T----TAC--CAACATCAAGAAAGAGAAGCCTGTGGTGATAAAGTACAAGGAATGCCTAA 471 Query 364 AGAATCATGCAGCTACCATGGGAGGCAATGCCATTGATGGTTGTGGAGAGTTTATGCCAA 423 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 AGAACCATGCAGCTACCATGGGAGGCAATGCCATTGATGGTTGTGGAGAGTTTATGCCAA 531 Query 424 GTGGTGAAGAAGGTTCCATTGAAGCTCTCACTTGTTCAGCTTGCAACTGCCATAGAAACT 483 |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 532 GTGGTGAAGAAGGTTCCATTGAAGCTCTCACTTGCTCAGTTTGCAACTGCCATAGAAACT 591 Query 484 TCCATAGAAGAGAAATTGAAGGTGAACAAAAAACCTTCTTTTCCCCTTACCTCAACCACC 543 | ||||||||||||| ||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 592 TTCATAGAAGAGAAACCGAAGGTGAAGAGAAAACATTCTTTTCCCCTTACCTCAACCACC 651 Query 544 ACCAACTACCTCCGCCGCAGAGAAAACTCATGTTCCACCACAAGATGATCAAATCACCAT 603 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 ACCAACCACCTCCGCAGCAGAGAAAACTCATGTTCCACCACAAGATGATCAAATCACCAT 711 Query 604 TACCACAACAAATGATAATGCC-AGTTGGCGTTACAACCGCTGGATCCAACTCAGAGTCA 662 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 712 TACCACAACAAATGATAATGCCTA-TTGGCGTTACAACCGCTGGATCCAACTCAGAGTCA 770 Query 663 GAGGATCTTATGGAGGAAGAGGGCGGAGGAAGCTTGACATTCCGGCAaccaccaccacca 722 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 771 GAGGATCTTATGGAGGAAGAAGGCGGAGGAAGCTTGACATTCCGGCAGCCACCACCACCA 830 Query 723 ccaccaTCGTATAGTTACGGACATAATCAGAAGAAGAGGTTTAGGACAAAGTTTACTCAA 782 ||| || |||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 831 CCATCACCGTATAGTTACGGACATAATCAGAAGAAAAGGTTTAGGACAAAGTTTACACAA 890 Query 783 GAGCAAAAGGAAAAGATGATGAGTTTTGCGGAGAGAGTTAGTTGGAAGATTCAGAGACAA 842 ||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||||||| Sbjct 891 GAGCAAAAGGAGAAGATGATTAGTTTTGCGGAAAGAGTTGGTTGGAAGATTCAGAGACAA 950 Query 843 GAGGAATCTGTTGTTCAACAGCTTTGTCAAGAGATCGGAATTAGGAGAAGAGTTCTTAAA 902 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 951 GAGGAATCTGTTGTTCAACAGCTTTGTCAAGAGATTGGAATTAGGAGAAGAGTTCTTAAA 1010 Query 903 GTTTGGATGCacaacaacaaacacaatctatccaagaagagcaacaacaacaacgttaat 962 ||||||||||||||||||||||| ||||| |||||||||||||||||| |||| | Sbjct 1011 GTTTGGATGCACAACAACAAACAAAATCTCTCCAAGAAGAGCAACAAC------GTTAGT 1064 Query 963 aacaaTGTTGAGCTTTCTGCTGGTAATAATAACGCTACTACTGAAAATTTTGCTTCTATT 1022 |||||||| || ||||||||||||||||| || | |||||||||| ||||||||| | Sbjct 1065 AACAATGTCGACCTTTCTGCTGGTAATAACGACA-T--TACTGAAAATCTTGCTTCTACT 1121 Query 1023 AATCCTTAGTT 1033 ||||||||||| Sbjct 1122 AATCCTTAGTT 1132 > AT1G14440.1 | Symbols: AtHB31, HB31, ZHD4 | homeobox protein 31 | chr1:4938824-4940903 REVERSE LENGTH=1577 Length=1577 Score = 279 bits (151), Expect = 3e-74 Identities = 632/849 (74%), Gaps = 93/849 (11%) Strand=Plus/Plus Query 130 GTGGTGGTGGGCATGGGAACATGATCCATCATCTTCATCATCAT-CATGCCAATTCTGCA 188 |||||||| | ||||| ||||||||||||||| | |||||||| | ||| |||||||| Sbjct 448 GTGGTGGTAGTCATGGTCACATGATCCATCATCATGATCATCATGC-TGCTAATTCTGCT 506 Query 189 CCAT-CATCTCTCAAC-ATGAC--TACT--TCAAACCCA-CTACTAGTCTCC-TCAAATG 240 || | || ||| |||| | || |||| || || ||| || | | | || | | ||| Sbjct 507 CC-TCCAACTCACAACAACAACAATACTACTC-AA-CCACCT-CCAAT-GCCGTTACATG 561 Query 241 GTAATGGTCTTGGCAAAAATCATGAACATTCTCATCATCATCATGTGGGTTACAACATCA 300 ||||||||| |||||| ||| |||| || |||||||||||| | | | ||||| Sbjct 562 GTAATGGTCATGGCAACAATTATGATCA---TCATCATCATCA----AGAT-CCTCATCA 613 Query 301 TGGTCAGCAACAACAAC-ATCAAGAAAGAGAAGCCTGTGGTGATCAAGTACAAGGAATGC 359 | || | ||||| | ||| | | ||||||| | |||| ||||||||||| || Sbjct 614 T-GTTGGTTACAAC-GCTATC-A-TCA-AGAAGCC--T-ATGATAAAGTACAAGGAGTGT 665 Query 360 CTAAAGAATCATGCAGCTA-CCATGGGAGGCAATGCCATTGATGGTTGTGGAGAGTTTAT 418 || ||||| |||||||| | | |||||||||||||| | |||||| |||||||||||||| Sbjct 666 CTCAAGAACCATGCAGC-AGCTATGGGAGGCAATGCTACTGATGGGTGTGGAGAGTTTAT 724 Query 419 GCCAAGTGGTGAAGAAGGTTCCATTGAAGCTCTCACTTGTTCAGCTTGCAACTGCCATAG 478 ||||||||||||||| || |||||||| ||||||||||| ||||||||||| ||||| || Sbjct 725 GCCAAGTGGTGAAGATGGCTCCATTGAGGCTCTCACTTGCTCAGCTTGCAATTGCCACAG 784 Query 479 AAACTTCCATAGAAGAGAAATTGAAGGTGAACAAAAA---ACCTTCTTTTCCCCTTACCT 535 ||||||||||||| |||| | ||||| |||| | ||| | | |||||||||| Sbjct 785 GAACTTCCATAGAAAAGAAGTGGAAGGCGAACTCGCAGCCACCGCCATGTCCCCTTACC- 843 Query 536 CAACCACCACCAACTACCTCCGCCGCAGAGAAAACTCATGTTCCACCAC-AAGATGATCA 594 | ||| |||| || || | ||| | | || |||||| || ||||| || | ||||| Sbjct 844 -A-CCAACACC--CT-CCACA-CCG-A-A-AA--CTCATGCTCAACCACCAAAA-GATCA 891 Query 595 AATCACC-ATTACCACAACAAATGATAATGCC-AGTTGGCGT-T--A-CAACCG---C-T 644 |||| | || ||||| |||||||| ||||| | |||| || | | | |||| | | Sbjct 892 GATCAGCTATG-CCACACCAAATGATCATGCCCA-TTGGAGTCTCTAACTACCGGTACAT 949 Query 645 GGATC-CAACTCAGAGTCAGAGGATCTT-ATGGAGGAAGAGGGCGGAGGAAGCTTGACAT 702 | || |||||| ||||| ||||| ||| ||||||||||| |||| | | | | ||| Sbjct 950 GCATAACAACTCCGAGTCCGAGGA-CTTTATGGAGGAAGATGGCGTAACCACC--G-CAT 1005 Query 703 TCCGGCAaccaccaccaccaccaccaTCGTATAGTTACGGACATAATCAGAAGAAGAGGT 762 | | | | | |||| | ||| | | | | || || ||||||||||||| Sbjct 1006 -CTAG-ATCG-CTACCA--A--ACC-T-GCC-A-T-ACA-AC-----CAGAAGAAGAGGT 1047 Query 763 TTAGGACAAAGTTTACTCAAGAGCAAAAGGAAAAGATGATGAGTTTTGCGGAGAGAGTTA 822 | ||||||||||| || | || || ||||| |||||| | |||||||| |||| |||| Sbjct 1048 TCAGGACAAAGTTCACGCCGGAACAGAAGGAGAAGATGCTTAGTTTTGCTGAGAAAGTTG 1107 Query 823 GTTGGAAGATTCAGAGACAAGAGGAATCTGTTGTTCAACAGCTTT-GTCAAGAGATCGGA 881 | ||||| || || || ||||| || | |||||||||| || ||| || ||||||| ||| Sbjct 1108 GGTGGAAAATACAAAGGCAAGAAGATTGTGTTGTTCAA-AGGTTTTGTGAAGAGATTGGA 1166 Query 882 ATTAGGAGAAGAGTTCTTAAAGTTTGGATGCacaacaacaa-a-cacaatctatccaaga 939 | | ||||||||| ||||| |||||||||||||||||||| | | || | | ||||||| Sbjct 1167 GTGAAGAGAAGAGTGCTTAAGGTTTGGATGCACAACAACAAGATC-CATT-TCTCCAAGA 1224 Query 940 agagcaaca 948 ||| ||||| Sbjct 1225 AGAACAACA 1233 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52961574975 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5