BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484176 Length=1622 Score E Sequences producing significant alignments: (Bits) Value AT2G02710.1 | Symbols: PLP, PLPB | PAS/LOV protein B | chr2:758... 1818 0.0 > AT2G02710.1 | Symbols: PLP, PLPB | PAS/LOV protein B | chr2:758693-760871 REVERSE LENGTH=1582 Length=1582 Score = 1818 bits (984), Expect = 0.0 Identities = 1322/1474 (90%), Gaps = 68/1474 (5%) Strand=Plus/Plus Query 198 cttttttcCCATGAAAACATTTTCTTGATTCCCGATTTCAAATTTC-CATACCTGGGTTT 256 ||||||| | |||||||||||||||||||||| ||||||||||||| || | |||| ||| Sbjct 79 CTTTTTTTCAATGAAAACATTTTCTTGATTCCTGATTTCAAATTTCACA-ATCTGGATTT 137 Query 257 GGTGTTTCGGATTCACTTTGAAGAAAAAGTTTTTCAATTTCGCCTCAAAACCCACATGGG 316 |||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 138 CGTGTTTCGAATTCACTTTGAAGAAAAAGTTTCTCAATTTCGCCTGAAAACCCACATGGG 197 Query 317 ATTGGCACTAAACACTGGACTGACAACAAG-AGCAAGAGTAAT-AGTCATCGAGTGTTTA 374 ||||| |||||||||| ||||||||| ||| || ||||||||| | |||||||||||||| Sbjct 198 ATTGGAACTAAACACTAGACTGACAAGAAGAAG-AAGAGTAATCA-TCATCGAGTGTTTA 255 Query 375 TTACGATTATGTCC-T--C--AA----C-GAA--A-TCTT--C---------AGAAGAAG 410 |||||||||||||| | | || | ||| | | || | |||||||| Sbjct 256 TTACGATTATGTCCTTAACGAAATCTTCAGAATCAGTTTTCACTGAAGAAGAAGAAGAAG 315 Query 411 ATTCCTTTAACGGTCGATACAC-TCTATGGATCACAGAAGCTTTAGAAGAGCTTCCTCAC 469 ||||||||| |||||||||||| | ||||||||| |||||| ||||| |||||||| ||| Sbjct 316 ATTCCTTTAGCGGTCGATACACGT-TATGGATCAAAGAAGCATTAGAGGAGCTTCCACAC 374 Query 470 AATTTCACAATCACCGACCCGTTTATTTCGGGTCACCCGATTGTTTTCGCGAGCTTAGGG 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 375 AATTTCACAATCACCGACCCGTTTATTTCGGGTCACCCGATTGTTTTCGCGAGCTTAGGG 434 Query 530 TTTTTGAAAATGACTGGGTATTCACGAGAAGAAGTCATCGGAAGAAACGGGAAAGTTTTT 589 ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| Sbjct 435 TTTTTGAAAATGACTGGCTATTCACGAGAAGAAGTGATCGGAAGAAACGGTAAAGTTTTT 494 Query 590 CAAGGACCTAAGACTAATCGAAGATCGATCATGGAGATTCGTGAAGCTATTCGTGAAGAG 649 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 495 CAAGGACCTAAGACTAATCGAAGATCGATCATGGAGATTCGTGAAGCGATTCGTGAAGAG 554 Query 650 AGATCTGT-TATGGTTAGCTTGTTGAATTATCGTAAATCTGGATCTCCGTTTTGGATGTT 708 ||||| || | || |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 555 AGATCAGTGCA-AGTGAGCTTGTTGAATTATCGTAAATCTGGGTCTCCGTTTTGGATGTT 613 Query 709 GTTTCATATGAGTCCTGTTTTTGGGAGAGATGATGGTAAAGTCATCAATTTTGTGGCGGT 768 |||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 614 GTTTCATATGTGTCCTGTTTTTGGGAAAGATGATGGTAAAGTCACCAATTTTGTGGCGGT 673 Query 769 TCAGGTCCCGATTTCGGGACAAG-A-A-CATC-G--G-A----AG----CTCGGAGATAT 813 |||||||||||||||||||| || | | |||| | | | || |||||||| | Sbjct 674 TCAGGTCCCGATTTCGGGACGAGAACATCATCGGAAGAAGTTGAGAAATGTCGGAGATTT 733 Query 814 GTCGTCGGATCA-TTCTGAGTTGGTGTTTGGTTCTTGTCGAAGAGAGGTTTGTTTTGGTA 872 |||||||||| | |||| | |||||||||||||||||||||||||||||||||| Sbjct 734 GTCGTCGGAT-ACTTCT---CCGACATTTGGTTCTTGTCGAAGAGAGGTTTGTTTTGGTA 789 Query 873 GTTTCGTGCATCAGAAACAAGCTTCACCAGTGGAATGTGATGATGA-G--CAAGGATTAG 929 ||||||| |||| | | ||||| ||||||||||||||||||||| | |||||||||| Sbjct 790 ATTTCGTGTGTCAGGATCGAGCTTTACCAGTGGAATGTGATGATGATGAACAAGGATTAG 849 Query 930 AGGATTGGGAACACTGTGAAGCGAGTGAGTCTGAGAAGCTGAAAGCTGTGGAAGCAATTA 989 ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |||| Sbjct 850 AGGATTGGGAACAGTGTGAAGCGAGTGAGTCCGAGAAGCTGAAAGCTACGGAAGCTATTA 909 Query 990 ACAATGTGTTATCTATTTTAACGCGTTACAGCAAGTTGAGTGGTAGATTAGTCTGCGGAA 1049 |||||||||||||||| ||| || ||||||| ||||||||||||||||||||||||||| Sbjct 910 ACAATGTGTTATCTATCTTAGTGCATTACAGCGAGTTGAGTGGTAGATTAGTCTGCGGAA 969 Query 1050 AGCGGTACTGCTTGCGAGGAGTAGATTGTCTAAGTTCGTCGTTGGTTATTTCTCTCGGTA 1109 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 970 AGCGGTACTGCTTGCGAGGAGTAGATTGTCTAAGCTCGTCGTTAGTTATTTCTCTCGGTA 1029 Query 1110 GAATCAAACAAAGTTTCGTATTAACCAATCCATGCTTACCCGACATGCCTATCGTTTATG 1169 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 1030 GAATCAAACAAAGTTTCGTATTAACCAATCCATGCTTACCAGACATGCCTATCATTTATG 1089 Query 1170 CGAGTGATTCCTTTTTGACACTGACCGGTTACAAGAGACAGGAAGTGTTGGGTCAAAACT 1229 |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1090 CGAGTGATGCCTTTTTGACACTGACCGGTTACAAGAGACAGGAAGTGTTGGGACAAAACT 1149 Query 1230 GCAGATTTCTGAGTGGGGTTGATACCGATTCCTCAGTACTATACGAGATGAAGGAGTGCA 1289 | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1150 GTAGATTTCTGAGTGGGGTTGATACTGATTCCTCAGTACTATACGAGATGAAGGAATGCA 1209 Query 1290 TCTTAAAGGGACAATCATGCACAGTTCAAATACTAAATTACAGTAACAGAAAAGATAAGA 1349 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1210 TCTTAAAGGGACAATCATGCACAGTGCAAATACTAAATTACAGTAACAGAAAAGATAAGA 1269 Query 1350 GCTCATTCTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGACAGCAT 1409 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1270 GCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGACAGCAT 1329 Query 1410 ATTTTGTGGGTGTTCAGGTGGAAGGAAGTTGTAGAAATACTGAAAGTAAAGAGCTGAGAC 1469 |||||||||||||||| || |||| |||||||||||||||||||| |||||||||||||| Sbjct 1330 ATTTTGTGGGTGTTCAAGTAGAAGCAAGTTGTAGAAATACTGAAATTAAAGAGCTGAGAC 1389 Query 1470 CAGAGACAAGGCAACTGAGTGTGGTCGGTGCGGTTAGAGTTGCGGTTAGGAGCTCATTGA 1529 ||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1390 CAGAGACGAGACAACTGAGTGTTGTCGGTGCGGTTAGAGTTGCGGTTAGAAGCTCATTGA 1449 Query 1530 TGGTAACATGCTAATGTACGCCCGAAAGAAAATGTC-TCTTAGAAAGAAAAGTAGAAAAG 1588 |||| |||||||||| |||||| ||||||||||| | || || | | |||| | Sbjct 1450 TGGTGACATGCTAATATACGCCAGAAAGAAAATG-CGTC---GACTTA---G-AGAA--G 1499 Query 1589 AGTATGATGTGAATTGGATATACATCTTTACTAT 1622 ||| | | |||||||||| ||||||||||||||| Sbjct 1500 AGTCTAAAGTGAATTGGACATACATCTTTACTAT 1533 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80120069820 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5