BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484185
Length=2044
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02790.1 | Symbols: IQD29 | IQ-domain 29 | chr2:787915-79094... 3101 0.0
> AT2G02790.1 | Symbols: IQD29 | IQ-domain 29 | chr2:787915-790946
FORWARD LENGTH=2067
Length=2067
Score = 3101 bits (1679), Expect = 0.0
Identities = 1930/2050 (94%), Gaps = 21/2050 (1%)
Strand=Plus/Plus
Query 1 GTGTAATTTCTTACTGTATCCACtttttggttttttAGGTCACTGCTCCGACGAAAGAGC 60
||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| |
Sbjct 1 GTGTAATTTCTCACTGTAACCACTTTTTGGTTTTTTAGGTCACTGCTCCGACG-AAGACC 59
Query 61 CTTCTAACAAGACAACATTTTGAAGAACGTAAGAGTAACGATTCGGTACATTGTTTCTAT 120
|||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||
Sbjct 60 CTTCTAACAAGACAACATTTTGAAGAACATAACAGTAACGATTCGCTACATTGTTTCTAT 119
Query 121 TTTTGTAGCAACTTTCTAATTGTAGCCATTAGAAAAGATGGGAAAGACTCCAAGTCCTGG 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTTGTAGCAAGTTTCTAATTGTAGCCATTAGAAAAGATGGGAAAGACTCCAAGTCCTGG 179
Query 181 TAAATGGATCAAGTCTCTTCTTGGGAAGAAGTCATCCAAATCGAGTTTGGAGAAAGGAGG 240
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 180 TAAATGGATCAAGTCTCTTCTTGGAAAGAAGTCATCGAAATCGAGTTTGGAGAAAGGAGG 239
Query 241 CGAAAAATTGAGATCTGCAAAGAAAGAAGAGCTTGTGGTGAAGGTGAAGGATAATAATGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGAAAAATTGAGATCTGCAAAGAAAGAAGAGCTTGTGGTGAAGGTGAAGGATAATAATGT 299
Query 301 CTCCAAGTTACCTTCTGAACCGCCTGCAATTTCATCTCAAGAAGTTGCAGCTACTCAATC 360
||| ||||||||| | ||||| |||| | ||||||| ||||||||||||||||||||| |
Sbjct 300 CTCAAAGTTACCTACCGAACCACCTGTAGTTTCATCACAAGAAGTTGCAGCTACTCAAAC 359
Query 361 TGTAGTAGTTCCTGATGTTGTCATTACCGAGAAGCAGCCAAGCGGAGACATTGAAGGCAA 420
||| || |||||||||||||| ||| | |||||||| | ||| ||||||||||||||| |
Sbjct 360 TGTGGTCGTTCCTGATGTTGTAATTGCTGAGAAGCAACTAAGTGGAGACATTGAAGGCGA 419
Query 421 TGAGTCATCGAATGTGAATCTTGAGTCAGGGAATGACTCTGAAGAAGGAAAGCTTGAAGA 480
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 TGAGTCATCGAATGTGAATCTTGAGTCAGGGAATGACTCTGAAGAAGTCAAGCTTGAAGA 479
Query 481 AGCTGCTACAAAGGTTCAAGCTGCTCTCCGAGCTCATCAGGCCCGTGAAGAATTTCAGAA 540
||||||||||||||||||||||||| | ||||||| |||||||||||||||| ||||||
Sbjct 480 AGCTGCTACAAAGGTTCAAGCTGCTTTGAGAGCTCAGCAGGCCCGTGAAGAATCTCAGAA 539
Query 541 CCTCAAAGGTATCATAAGGCTGCAAGCAGTTATCCGTGGTCACTTGGTTAGAAGACAAGC 600
|||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 540 CCTCAAAGGTATCACAAGGGTGCAAGCAGTTATCCGTGGTCACTTGGTCAGAAGACAAGC 599
Query 601 TGTTGCTACTTACTCGTGCATTTGGGGAATTGTGAAAGTACAAGCACTTGTTCGCGGGAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGTTGCTACTTACTCGTGCATTTGGGGAATTGTGAAAGTACAAGCACTTGTTCGCGGGAA 659
Query 661 GAAAGCTAGATCTTCAGAAACCGTGGCTCAACTCCAGAAAACAAATACGGAAACCGAGAC 720
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 GAAAGCTAGATCTTCAGAAACCGTGGCTCAACTTCAGAAAACAAATACGGAAACCGAGAC 719
Query 721 TTCTGAAGCTTTGCAAGGAAGCACTTACAGTTGGATGGAGAATCCTACAAAGCTCTCCAT 780
||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 720 TTCTGAAACTTTGCAAGGAAGCACATACAGTTGGATGGAGAACCCTACAAAGCTCTCAAT 779
Query 781 GATTGATAAGCTTTTGGTTTCGTCACCAACAACATTGCCTCTGAAGATCCAGTATAGTCC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GATTGATAAGCTTTTGGTTTCGTCACCAACAACATTGCCTCTGAAGATCCAGTATAGTCC 839
Query 841 TGAGGATCCTAACTCAGCCAAGGTGTGGCTTGGACGCTGGACGCAATTACAGGTTTGGGC 900
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 840 TGAAGATCCTAACTCAGCCAAGGTGTGGCTTGGACGCTGGACGCAGTTGCAGGTTTGGGC 899
Query 901 TCCTGGTCC-TCTGGTGGTTAAGAATCTGGTACCAAAATCTCAGACAAAGAAGCGAAGTT 959
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCCTGGTCCAT-TGGTGGTTAAGAATCTGGTACCAAAATCTCAGACAAAGAAGCGAAGTT 958
Query 960 TTCAAACAGTTGAAACGGAAAAGGGAAAACTTAAGAAAGGTGTCAAGAAACCATCCGGTG 1019
||||| |||| ||| ||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct 959 TTCAAGCAGTCGAAGCGGAAAAGGGAAAACTTAAGAGAGGTGTCAGGAAACCAACCGGTG 1018
Query 1020 GTTCAAATACGGGGAACAGCTCGAGTAGCCGTTCAACAGCTGACAACGAAAAGCCTAAGC 1079
||||| ||| | |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1019 TTTCAACTACTGCAAACAGCTCTACTAGCCGTTCAACAGCTGACAACGAAAAGCCTAAGC 1078
Query 1080 GAACTGTGAGGAAGGCCTCCACACTTGGTAAAGAACTTTC-AAGAATCGAGAATGACAAG 1138
|||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 1079 GAACTGTGAGGAAGGCCTCCACACTTGGTAAAGAACTTTCGAA-AATCGAGAACGACAAG 1137
Query 1139 TCTAAGCAGAGTTCAAGGAAAAGTACTAGCGCCATAAAGGAAGGGTCTTCAGTGGATGTT 1198
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1138 TCTAAGCAGAGTTCAAGAAAAAGTACTAGCGCCATAAAGGAAGGGTCTTCAGTGGAGGTT 1197
Query 1199 AAAGATGAGAAGCCTAGAATTAGTC-TAAAAAAGGCTTCACTTTCTAATGGGATAGGGAA 1257
||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1198 AAAGATGAGAAGCCTAGGATTAGTCATAAAAA-GGCTTCACTTTCTAATGGGATAGGGAA 1256
Query 1258 AGCTACCCGCAAATCCGCTGAGAAGAAGAAAGAGATTGCAGATTCAGTGCAGAAAGAATT 1317
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1257 AGCTACCCGCAAATCAGCTGAGAAGAAGAAAGAGATTGCAGATGCAGTGCAGAAAGAATT 1316
Query 1318 GTCTATTGAAGAGGTTTCAGCTTCTGTAGCTGATGCTCCTGAAGATGAAAAGATGAATCT 1377
| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 1317 GCCTATTGAAGAGGTTTCAGTTTCTTTAGTTGATGCTCCTGAAGATGAAAAGATGAATCT 1376
Query 1378 TATCCCTGAAACAATTTTGAAAGAGTCTGATCTCGATAAAGATGAGAAATCACCGGTCCT 1437
|||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1377 TATCCCTGTAACAATTTCGAAAGAGTCTGATCTCGATAAAGATGAGAAGTCACTGGTCCT 1436
Query 1438 GGATAACCCGGAGCAAGAGGAACTCAAGACTGCCGAGAGAGATGATAAAGCTGAAGAGGA 1497
|||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1437 GGATAAGCCGGAGCAAGATGAACTCAGGACTGCCGAGAGAGATGATAAAGCTGAAGAGGA 1496
Query 1498 ACTCAAGACTGCCGAGAGAGATGAGAAAGCTGAAGAGGAAATCCAAGAGCCAGACGTGCA 1557
|||||||||||| ||||||||||| | ||||||||| ||||||| |||||||||| |||
Sbjct 1497 ACTCAAGACTGCAGAGAGAGATGATAGTGCTGAAGAGAAAATCCAGGAGCCAGACGCGCA 1556
Query 1558 GATAAGCTCTGAGAATGGAAATGTTGCTTCTGAGAACACAAAGCCAAGCGATAGGCGAGC 1617
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1557 GATAAGCTCTGAGAATGGAAATGTTGCTTCTGAGAACACAAAGCCAAGCGATAGACGAGC 1616
Query 1618 TTCATTACCTGCAAAAATTGAGAATCATCATCAAGACGATGGGCTTACACAGAGTGGGAG 1677
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1617 TTCATTACCTGCAAAGATTGAAAATCATCATCAAGACGATGGGCTTACACAGAGTGGGAG 1676
Query 1678 AAAAATCCCAAGCTACATGGCTCCAACTGCATCTGCAAAGGCAAGAATAAGAGGACAAGG 1737
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 AAAAATCCCAAGCTATATGGCTCCAACTGCATCTGCAAAGGCAAGAATAAGAGGACAAGG 1736
Query 1738 GTCTCCGAGAATTGCTCAAGAGAAGCCTGAGAAAAACGGGACAACACGGCGCCACTCTCT 1797
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1737 GTCTCCGAGGATAGCTCAAGAGAAGCCTGAGAAAAATGGGACAACACGGCGCCACTCTCT 1796
Query 1798 TCCTCCTGCAGCCAATGGTAAGCTGAGTACAATGTCTCCAAGGGCTCACAGACTTCTCAT 1857
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1797 TCCTCCTGCAGCCAATGGTAAGCTGAGTACAATGTCTCCAAGAGCTCACAGACTTCTCAT 1856
Query 1858 AGCTTCAGCTAAAGGATCAATGAACAGTGACAGATCTTTTTCGTCTTCCAAGGACATTGG 1917
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1857 AGCTTCAGCCAAAGGATCAATGAACAGTGACAGATCTTTTTCATCTTCCAAGGACATTGG 1916
Query 1918 TGGTAAGAGGTTTAAACCTATAATTAATTATACACAAGCCTCTT---CAATAACTTTTAC 1974
||||||||||||||||||||||| || | | ||||||||| || |||| |||||||
Sbjct 1917 TGGTAAGAGGTTTAAACCTATAACTA-T-A--CACAAGCCTTTTTGTCAATTTCTTTTAC 1972
Query 1975 ACTATCTAGTATCTACATACTTTTAACACATTTCGTTCATGTTTATTTCAGACAAGTCGA 2034
| | | | | |||||| ||||||||| |||| |||||||||||| |||||||||||||
Sbjct 1973 A-T-T--A-T--CTACATCCTTTTAACAAATTTAGTTCATGTTTATATCAGACAAGTCGA 2025
Query 2035 CGAAAGCTGA 2044
||||||||||
Sbjct 2026 CGAAAGCTGA 2035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101304699810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5