BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484202
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02930.1 | Symbols: ATGSTF3, GST16, GSTF3 | glutathione S-tr... 1194 0.0
AT4G02520.1 | Symbols: ATGSTF2, ATPM24.1, ATPM24, GST2, GSTF2 |... 1096 0.0
> AT2G02930.1 | Symbols: ATGSTF3, GST16, GSTF3 | glutathione S-transferase
F3 | chr2:851164-852222 REVERSE LENGTH=939
Length=939
Score = 1194 bits (646), Expect = 0.0
Identities = 703/731 (96%), Gaps = 2/731 (0%)
Strand=Plus/Plus
Query 35 TTCAACATCAGACATCACATCTCTTACTCTTTTGTCTCTTTTTCTCGGTCTTCAAAGAGT 94
|||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 39 TTCAACATCAAACATCACATCTCTTTCTCTTTTATCTCTTTTTCTCGGTCTTCAAAGAGT 98
Query 95 TTCTTAGTAACCAACTCAATGGCAGGTATCAAAGTTTTCGGAAC-CCCAGCTTCCACTTC 153
|||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 99 TTCTTAGTTACCAAATCAATGGCAGGTATCAAAGTTTTCGG-ACACCCAGCTTCCACTTC 157
Query 154 AACCAGGAGAGTCCTCATCGCTCTCCACGAGAAAAACCTCGACTTTGAGCTCGTTCATGT 213
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 158 CACCAGGAGAGTCCTCATCGCCCTCCATGAGAAAAACCTCGACTTTGAGCTCGTTCATGT 217
Query 214 TGAACTCAAAGACGGTGAGCACAAGAAGGAGCCTTTCCTCTCCCGCAACCCTTTTGGTCA 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 TGAACTCAAAGACGGTGAGCACAAGAAGGAGCCTTTCCTCTCCCGCAACCCTTTTGGTCA 277
Query 274 AGTTCCAGCCTTTGAAGATGGAGACCTCAAGCTCTTCGAATCAAGAGCGATTACTCAGTA 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 AGTTCCAGCCTTTGAAGATGGAGACCTCAAGCTCTTCGAATCAAGAGCGATTACTCAGTA 337
Query 334 CATAGCTCACCGATACGAAAACCAAGGAACCAACCTTCTCCAAGCTGACTCCAAGAACAT 393
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 338 CATAGCTCACCGATACGAAAACCAAGGAACCAACCTTCTCCCAGCTGACTCCAAGAACAT 397
Query 394 AGCTCAGTATGCAATCATGGCCATTGGACTGGAAGTAGAAGCTCATCAGTTCGATCCCGT 453
||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 398 AGCTCAGTATGCAATCATGTCCATTGGAATACAAGTAGAAGCTCATCAGTTCGATCCCGT 457
Query 454 GGCTTCAAAGCTTGCTTGGGAACAAGTATACAAGCTCATCTATGGCTTGACCACAGACCA 513
||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||||
Sbjct 458 GGCTTCAAAGCTTGCTTGGGAACAAGTATTCAAGTTCAACTATGGCTTGAACACAGACCA 517
Query 514 AGCCGTTGTTGCAGAAGAAGAAGCTAAGTTGGCCAAGGTCCTTGATGTCTACGAGGCTAG 573
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 518 AGCCGTTGTTGCAGAAGAAGAAGCTAAGTTAGCCAAGGTCCTTGATGTCTACGAGGCTAG 577
Query 574 GCTCAAGGAGTTCAAGTATTTGGCTGGTGACACTTTCACTTTGACCGATCTTCACCACAT 633
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 578 GCTGAAGGAGTTCAAGTATTTGGCTGGTGAAACTTTCACTTTGACCGATCTTCACCACAT 637
Query 634 TCCCGTGATTCAATACCTGCTCGGAACTCCCACCAAGAAGCTCTTCACCGAGCGTCCACG 693
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 638 TCCCGTGATTCAATACCTGCTCGGAACTCCCACCAAGAAGCTCTTCACGGAGCGTCCACG 697
Query 694 TGTCAACGAGTGGGTCGCTGAGATCACCAACAGGCCAGCTTCCCAGAAGGTTCAGTGAGA 753
||||||||||||||| |||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 698 TGTCAACGAGTGGGTGGCTGAGATCACCAAGAGGCCAGCTTCAGAGAAGGTTCTGTGAGA 757
Query 754 AATTTCTAAAA 764
|||||||||||
Sbjct 758 AATTTCTAAAA 768
> AT4G02520.1 | Symbols: ATGSTF2, ATPM24.1, ATPM24, GST2, GSTF2
| glutathione S-transferase PHI 2 | chr4:1110452-1111660 REVERSE
LENGTH=989
Length=989
Score = 1096 bits (593), Expect = 0.0
Identities = 690/736 (94%), Gaps = 10/736 (1%)
Strand=Plus/Plus
Query 35 TTCAACATCAGACATCACATCTCTTACTCTTTTGTCTC-TTTTTCTCGGTCTTCAAAGAG 93
|||||||||| ||||||||| |||| ||||||| |||| |||||||| ||||||||||||
Sbjct 50 TTCAACATCAAACATCACATTTCTTCCTCTTTTCTCTCTTTTTTCTCAGTCTTCAAAGAG 109
Query 94 TTTCTTAGTAA-CCAACTCAATGGCAGGTATCAAAGTTTTCGGAAC-CCCAGCTTCCACT 151
||||||||||| |||| |||||||||||||||||||||||||| || ||||||||||| |
Sbjct 110 TTTCTTAGTAACCCAAATCAATGGCAGGTATCAAAGTTTTCGG-ACACCCAGCTTCCA-T 167
Query 152 T-CAACCAGGAGAGTCCTCATCGCTCTCCACGAGAAAAACCTCGACTTTGAGCTCGTTCA 210
| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 168 TGCCACCAGGAGAGTCCTCATCGCCCTCCACGAGAAAAACCTCGACTTTGAGCTCGTTCA 227
Query 211 TGTTGAACTCAAAGACGGTGAGCACAAGAAGGAGCCTTTCCTCTCCCGCAACCCTTTTGG 270
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TGTCGAACTCAAAGACGGTGAGCACAAGAAGGAGCCTTTCCTCTCCCGCAACCCTTTTGG 287
Query 271 TCAAGTTCCAGCCTTTGAAGATGGAGACCTCAAGCTCTTCGAATCAAGAGCGATTACTCA 330
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TCAGGTTCCAGCCTTTGAAGATGGAGACCTCAAGCTCTTCGAATCAAGAGCGATTACTCA 347
Query 331 GTACATAGCTCACCGATACGAAAACCAAGGAACCAACCTTCTCCAAGCTGACTCCAAGAA 390
|||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||
Sbjct 348 GTACATAGCTCACCGATATGAAAACCAAGGAACCAACCTTCTCCAAACCGACTCCAAGAA 407
Query 391 CATAGCTCAGTATGCAATCATGGCCATTGGACTGGAAGTAGAAGCTCATCAGTTCGATCC 450
|||| ||||||| |||||||||||||||||| || ||||||||| ||| |||||||| ||
Sbjct 408 CATATCTCAGTACGCAATCATGGCCATTGGAATGCAAGTAGAAGATCACCAGTTCGA-CC 466
Query 451 C-GTGGCTTCAAAGCTTGCTTGGGAACAAGTATACAAGCTC-ATCTATGGCTTGACCACA 508
| ||||||||||||||||||| |||||| ||| |||| || ||||| ||||||||||||
Sbjct 467 CAGTGGCTTCAAAGCTTGCTTTTGAACAAATATTCAAG-TCCATCTACGGCTTGACCACA 525
Query 509 GACCAAGCCGTTGTTGCAGAAGAAGAAGCTAAGTTGGCCAAGGTCCTTGATGTCTACGAG 568
||| ||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 526 GACGAAGCCGTTGTTGCAGAAGAGGAGGCTAAGTTAGCCAAGGTCCTTGATGTCTACGAG 585
Query 569 GCTAGGCTCAAGGAGTTCAAGTATTTGGCTGGTGACACTTTCACTTTGACCGATCTTCAC 628
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 586 GCTAGGCTCAAGGAGTTCAAGTATTTGGCTGGTGAAACTTTCACTTTGACTGATCTTCAC 645
Query 629 CACATTCCCGTGATTCAATACCTGCTCGGAACTCCCACCAAGAAGCTCTTCACCGAGCGT 688
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 CACATTCCCGCGATTCAATACCTGCTCGGAACTCCCACCAAGAAGCTCTTCACCGAGCGT 705
Query 689 CCACGTGTCAACGAGTGGGTCGCTGAGATCACCAACAGGCCAGCTTCCCAGAAGGTTCAG 748
||||||||||| |||||||| ||||| |||||||| |||||||||||| |||||||||||
Sbjct 706 CCACGTGTCAATGAGTGGGTGGCTGAAATCACCAAGAGGCCAGCTTCCGAGAAGGTTCAG 765
Query 749 TGAGAAATTTCTAAAA 764
||||||||||||||||
Sbjct 766 TGAGAAATTTCTAAAA 781
Score = 206 bits (111), Expect = 4e-52
Identities = 156/176 (89%), Gaps = 10/176 (6%)
Strand=Plus/Plus
Query 759 CTAAAATTAAACAAGCGGCTGCCTCATTGTCC-A--TCTCAGTACTTTCTTTAATTTCTG 815
|||| |||||| |||||||| ||||||| || | ||||||||||||| ||||||
Sbjct 818 CTAAGATTAAATAAGCGGCTTTCTCATTGCCCAATTTCTCAGTACTTTC-----TTTCTG 872
Query 816 TTGTATCCTCTGTTTTTGTATCAGTTATGTGAGTGTGTGTCGTATGTTCTTGAGAGTATC 875
|||||||||||| |||| | |||||||||||||||||||| ||||| |||||||||||||
Sbjct 873 TTGTATCCTCTG-TTTTCTTTCAGTTATGTGAGTGTGTGT-GTATGCTCTTGAGAGTATC 930
Query 876 TTTGGCAAAAACTATTTATATAATCTTCAAGCTCTTCTAAAATAAATCAATTAGTT 931
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 931 TTTGGCAAAAACTATTTATCTAATCTTCAAGCTATTCTAAAATAAATCAATTAGTT 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45512137182
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5