BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484328 Length=1811 Score E Sequences producing significant alignments: (Bits) Value AT3G25660.1 | Symbols: | Amidase family protein | chr3:9339423... 2850 0.0 > AT3G25660.1 | Symbols: | Amidase family protein | chr3:9339423-9342204 REVERSE LENGTH=1991 Length=1991 Score = 2850 bits (1543), Expect = 0.0 Identities = 1703/1779 (96%), Gaps = 15/1779 (1%) Strand=Plus/Plus Query 1 TCTCCTTCCTCAAACAGCCGCCGCCGAAACATCTTCTCCGGCGTTACACCGGAGAATTCA 60 ||||||||||| |||| | ||||||||||| ||| ||||||||||||||||||||||| Sbjct 7 TCTCCTTCCTCGAACA---GTCGCCGAAACATTTTCGCCGGCGTTACACCGGAGAATTCA 63 Query 61 TCCTTCTTTAACTTATAACCCTAGTACCCAATTTCAATTTTAACCTCAGTATCTCCCCAA 120 ||||||||| ||||| || ||| ||||||||||| | ||||| |||| ||||| ||||| Sbjct 64 TCCTTCTTTGTCTTATTACTCTACTACCCAATTTC-AGTTTAAACTCACTATCTTCCCAA 122 Query 121 TTTGATGATTCAGTGATTCAAAATCAAAACTTGAAGCAATGTTATCGACATTGCAACCGC 180 |||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||| Sbjct 123 TTTGATGATTCAGTGATTCAAATTCGAAACTTCAAGCAATGTTATCGACATTGCAACCGC 182 Query 181 CGCGTTCTCTATCTCTCCTCCCTCTCCGCCGATTTCGAAA-CTCCAAAACCATTGTATCT 239 ||||||||||||| ||||||||||| ||||| ||| ||| || |||||||| || || Sbjct 183 CGCGTTCTCTATCACTCCTCCCTCTACGCCG-GTTCCAAATATCTAAAACCATCGTCTCC 241 Query 240 GCAGCTTCTTC---G---A-CGAC-C-TCCGTTATCTCTCCTCCACAATCTCAGATTCTC 290 ||||||||||| | | |||| | |||||||||||||| ||||||||||| |||||| Sbjct 242 GCAGCTTCTTCGAAGACCATCGACACTTCCGTTATCTCTCCACCACAATCTCAAATTCTC 301 Query 291 ACCACTCGTCGTTCACTCCTCTCCGGCGAAACCACAGCTGTCGAAATCGCAAAATCTTAC 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 ACCACTCGTCGTTCACTCCTCTCCGGCGAAACCACAGCTGTCGAAATCGCAAAATCTTAC 361 Query 351 CTTTCTCGTATTCGTCTCACTGAACCTCAGCTCAAATGTTTCCTTCACGTATCGGAGAAT 410 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 362 CTTTCTCGTATCCGTCTCACTGAACCTCAGCTCAAATGCTTCCTTCACGTATCGGAGAAT 421 Query 411 GTTCTCAAAGATGCTCAAGAGATTGATCAACGAATCGCTAAAGGTGAAGAATTGGGTCCT 470 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 422 GTTCTCAAAGATGCTCAAGAGATTGATCAACGAATCGCTAAAGGTGAGGAATTGGGTCCT 481 Query 471 CTCGCCGGAGTTTTGATCGGCGTTAAGGATAATATTTGTACTCAAGGTATGCCTTCTACC 530 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 482 CTCGCCGGAGTTTTGATCGGCGTTAAGGATAATATATGTACTCAAGGTATGCCTTCTACT 541 Query 531 GCCGCTTCGAGAATCTTGGAGCATTATCGTCCTCCGTTCGATGCTACGGCGGTTAAGAAG 590 || |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| Sbjct 542 GCTGCTTCGAGAATCTTAGAGCATTATCGTCCACCGTTCGATGCGACGGCGGTTAAGAAG 601 Query 591 ATTAAAGAGTTGGGTGGGATTGTTGTTGGTAAGACTAATATGGATGAATTTGGAATGGGA 650 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 602 ATTAAAGAGTTGGGTGGGATTGTTGTTGGTAAGACTAATATGGATGAGTTTGGAATGGGA 661 Query 651 AGTACCACTGAAGCTTCTGCTTTTCAGGTAACTGCGAATCCGTGGGATTTGAGTCGTGTA 710 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 AGTACCACTGAAGCTTCTGCTTTTCAGGTAACTGCGAATCCGTGGGATTTGAGTCGTGTA 721 Query 711 CCGGGAGGTTCATCGGGAGGATCAGCAGCAGCTGTTGCAGCAAGACAGTGTGTGGTGTCA 770 |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 722 CCGGGAGGTTCATCGGGAGGATCAGCAGCAGCTGTTGCAGCAAGGCAGTGTATGGTGTCA 781 Query 771 CTTGGTAGTGATACTGGTGGAAGTGTGAGACAGCCAGCTTCGTTTTGTGGTGTTGTTGGT 830 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 782 CTTGGTAGTGATACTGGTGGAAGTGTGAGACAGCCAGCTTCGTTTTGTGGTGTTGTAGGT 841 Query 831 TTTAAGCCAACTTATGGGCGTGTTTCTAGGTTTGGACTTATGGCTTATGCATCTTCGTTG 890 ||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 842 CTTAAGCCGACTTATGGGCGTGTTTCTAGGTTTGGGCTTATGGCTTATGCGTCTTCGTTG 901 Query 891 GATGTGATTGGGTGTTTTGGTTCAACGGTTGCTGATGCTGGGATGCTTCTTCATGCTATT 950 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 902 GATGTGATTGGGTGTTTTGGGTCTACGGTTGCTGATGCTGGGATGCTTCTTCATGCTATT 961 Query 951 TCTGGGTATGATAGGTTTGACTCCACGAGTAGCAAACAAGATGTGCCTGAGTTCCAATCT 1010 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 962 TCGGGGTATGATAGGTTTGACTCCACGAGTAGCAAACAAGATGTGCCTGAGTTCCAGTCT 1021 Query 1011 CAGTTTCTATCTATGGATCATTTTGAGTCTAAACCATTGAATGGAGTGAAAGTTGGTATA 1070 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1022 CAGTTTCTATCTGTGGATCATTTTGAGTCTAAACCATTGAATGGAGTGAAAGTTGGTATA 1081 Query 1071 ATTCGCGAGACACTCGAAGACGGTGTTGATTCTGGAGTGAGATCTGCTACTCAGGAAGCT 1130 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1082 ATTCGCGAGACACTTGAAGACGGTGTTGATTCTGGAGTGAGATCTGCTACTCAGGAAGCT 1141 Query 1131 GCGTCTCACTTAGAAGCATTGGGTTGTGTATTGACAGAGGTCTCCCTTCCTTCATTCTCT 1190 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1142 GCGTCTCACTTAGAAGCATTGGGTTGTATATTGACAGAGGTCTCCCTTCCTTCATTCTCT 1201 Query 1191 CTTGGACTACCAGCTTACTACGTTATTGCCTCATCGGAGTCATCTTCGAATTTATCACGT 1250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1202 CTTGGACTACCAGCTTACTACGTTATTGCCTCATCGGAGTCATCTTCGAATTTATCACGT 1261 Query 1251 TATGATGGTGTCAGATATGGAAATCAAGTTGTGGCTGAAGAACTCAATAAGCTGTATGAA 1310 |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 1262 TATGATGGTGTCAGATATGGTAATCAAGTTATGGCTGAAGAACTCAATAAGCTGTATGAA 1321 Query 1311 TGTTCCCGTGGAGAAGGATTTGGAGGAGAGGTGAAAATGAGAATTTTAATGGGGACATAT 1370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1322 TGTTCCCGTGGAGAAGGATTTGGAGGAGAGGTGAAAATGAGAATTTTAATGGGGACATAT 1381 Query 1371 GCACTCTCTGCGGGTTACTACGATGCTTACTACAAGCGAGCTCAACAGGTGAGAACACTA 1430 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1382 GCACTTTCTGCGGGTTACTACGATGCTTACTACAAGCGAGCTCAACAGGTGAGGACACTA 1441 Query 1431 ATTCGAAAAGACTTCAAAGCAGCGTTAGAACAGAACGATATCCTTATTTCTCCGGCAGCT 1490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1442 ATTCGAAAAGACTTCAAAGCAGCGTTAGAACAGAACGATATCCTTATTTCTCCGGCAGCT 1501 Query 1491 CCATCTGCTGCATACAAGATTGGTGAAAAGAAAGATGACCCACTGGCAATGTATGCTGGA 1550 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1502 CCATCTGCTGCATACAAGATTGGTGAAAAGAAAGATGATCCACTGGCAATGTATGCTGGA 1561 Query 1551 GACATTATGACGGTCAATGTGAATCTTGCAGGACTTCCTGCAATGGTATTACCGTGTGGA 1610 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1562 GACATTATGACGGTCAATGTGAATCTTGCCGGACTTCCTGCAATGGTATTACCTTGTGGA 1621 Query 1611 TTAGTCGAAGGTGGTCCCTCGGGTCTTCCTGTTGGTCTTCAAATGATCGGTGCAGCGTTT 1670 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1622 TTAGTCGAAGGTGGTCCCTCGGGTCTTCCTGTTGGTCTTCAAATGATCGGAGCAGCGTTT 1681 Query 1671 GATGAGGAGAAATTGCTGAAAGTGGGTCACATATTTGAGCAGACTCTTAAAGGATCAAGC 1730 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1682 GATGAGGAGAAATTGCTGAAAGTGGGTCACATATTTGAGCAGACTCTTAAAGGATCGAGC 1741 Query 1731 TTTGTTCCTCCATTGTTAGCCAATGTACCCTAACCATGT 1769 ||||||||||||||||||||||||||| ||||||||||| Sbjct 1742 TTTGTTCCTCCATTGTTAGCCAATGTAGCCTAACCATGT 1780 Score = 54.7 bits (29), Expect = 3e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1783 TTCAATTCTTTTATAATATAAATGTAGAT 1811 ||||||||||||||||||||||||||||| Sbjct 1854 TTCAATTCTTTTATAATATAAATGTAGAT 1882 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89607972825 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5