BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484347
Length=3152
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25840.1 | Symbols: | Protein kinase superfamily protein | ... 4713 0.0
AT1G13350.2 | Symbols: | Protein kinase superfamily protein | ... 1074 0.0
AT3G53640.1 | Symbols: | Protein kinase superfamily protein | ... 900 0.0
AT3G25826.1 | Symbols: | transposable element gene | chr3:9444... 75.0 4e-12
> AT3G25840.1 | Symbols: | Protein kinase superfamily protein
| chr3:9451861-9457554 REVERSE LENGTH=3414
Length=3414
Score = 4713 bits (2552), Expect = 0.0
Identities = 2897/3059 (95%), Gaps = 42/3059 (1%)
Strand=Plus/Plus
Query 1 ATTTCGACTT-CGACGATCCTCTCTGATGGCGAACGATAAGCAAATCGAATCTCACCACC 59
||||||| || ||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 84 ATTTCGA-TTACGACGATACTCTCTGATGGCGAACGATAAGCAGATCGAATCTCACCACC 142
Query 60 GCAAGCATCACCGTTCATCTTCCTCGTCCGACGAGACCGAGAAATCATCGAAACGGCACA 119
|||||||||||||||||||||| |||||||| || || || ||| |||||||||| ||||
Sbjct 143 GCAAGCATCACCGTTCATCTTCGTCGTCCGATGACACTGAAAAAGCATCGAAACGACACA 202
Query 120 AGCACCGTCATCACAAGCATCATCATCACCACAGGCATCGCCATCACCGAGATAAGAAGC 179
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 203 AGCATCGTCATCACAAG---CATCATCACCACAGGCATCGCCATCACCGAGATAAGAAGC 259
Query 180 GCGACGATGAAATTCCATCCGCCGGCGATGAGACAGCGATGATT-GATGTTACTCCGGCG 238
|||| |||||||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 260 GCGAAAATGAAATTCCATCCGCCGGCGATGAGACAGAGAT-ATTGGATGTTACTCCGGCG 318
Query 239 GCTCCAATTGGTGTTAGTAACGGCTGT---GAGGAGGATGTGGAGGAAGGGGAGATTTTA 295
|||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 319 GCTCCAATTGTTGTTAGTAACGGCTGTGAGGAGGAGGATGTGGAGGAAGGAGAGATTTTA 378
Query 296 GAAGAAGATGCGATTGGTGATGGTTTGATAAAGACGGCAGATTCCGACGGCGAGTTAGGC 355
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||| | ||||
Sbjct 379 GAAGAAGATGGGATTGGTGATGTTTTGATGAAGACGGCAGATTCCGACGGCGAATCAGGC 438
Query 356 GAAAT-AAA-AT-CCGATAATAATCTGCCTCCATTTGGGGAAAAAGGGCGTCAAGGAGAA 412
||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 439 GAAATCAAATTTGAAGATAATAATCTGCCTCCACTTGGGGAAAAAGGGCGTCAAGGAGAA 498
Query 413 GAGGAGACTTCTAATGGTGTTCTAACTCGTGAATCTGAAAGGGAGGATAAGAGGTGGGAT 472
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 GAAAAGAGTTCTAATGGTGTTCTAACTCGTGAATCTGAAAGGGAGGATAAGAGGTGGGAT 558
Query 473 AAAGATGCTAGAGGTACTTCAGAGAGGGTTAGTAAGA-TAAGTTATGATAATGGCAAG-A 530
||||| ||| ||||| |||||||||| |||||||| | ||||||||||||||||| || |
Sbjct 559 AAAGAAGCTGGAGGTCCTTCAGAGAGAGTTAGTAA-ATTAAGTTATGATAATGGC-AGAA 616
Query 531 GTTCGTTTTCTTCGTCAAATAGCAGGCAGTCTAATGAAGTCCGTGCTCGGAGTAGATCTA 590
||||||||||| ||||||| |||||||||||||| |||| |||||| |||||||||||||
Sbjct 617 GTTCGTTTTCTCCGTCAAACAGCAGGCAGTCTAACGAAGGCCGTGCCCGGAGTAGATCTA 676
Query 591 AGTCACATGATCGGGAGAGAG--------A----AA---TTGCGGAGGATGAGTTTTTGG 635
||||||||||||||||||||| | || |||||||||||||||||| ||
Sbjct 677 AGTCACATGATCGGGAGAGAGAAACTTCTAGGTCAAGGTTTGCGGAGGATGAGTTTTCGG 736
Query 636 ACAGAGGGAGACATCGTGATTCTAGTAGGGATTATCATCATGACAGAGTTGACTCAGGTA 695
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 737 ACAGAGGAAGACATCATGATTCTAGTAGGGATTATCATCATGACAGAGTTGACTCAGTTA 796
Query 696 GGGCTGAGGAAAGATATCATCGACGTGGGCGATATGAGGAAAATGACAGGCAATATAGCC 755
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 797 GGACTGAGGAAAGATATCATCGACGTGGGCGATATGAGGAAAATGACAGGCAATATAGTC 856
Query 756 GAGAAGTGTTGGAAAGAGATAGAAGTAAGGAGAGAGATATGGACAGGGAGGGAAGCATAA 815
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 GAGAAGTCTTGGAAAGAGATAGAAGTAAGGAGAGAGATATGGACAGGGAGGGAAGCATAA 916
Query 816 GAGATAGGGATTCAGAAGCAAGTAAACggagagagaaagatagtgatcggaggagggaaa 875
||||||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 917 GAGATAGGGATTCGGAAGGAAGTAAGCGGAGAGATAAAGATAGTGATCGGAGGAGGGAAA 976
Query 876 gagaacgagagaagagaagggacatagaggCTGACCGTGAAAGACGAAAAGAGAAGGAAC 935
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 977 GAGAACGAGAGAAGAGAAGGGAGATAGAGTCTGACCGTGAAAGACGAAAAGAGAAGGAAC 1036
Query 936 GAGAGCGCAGCACTGATAGGGATAGGAGAAAGGAAAGGGAAGGAGATTATTTACGGGATA 995
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1037 GAGAGCGCAGCATTGATAGGGATAGGAGAAAGGAGAGGGAAGGAGATTATTTACGGGATA 1096
Query 996 GAGATAATGAAAGAGGTAGGAGTAGAGATAGAACCAGGTATAACAGCagagagaggaaga 1055
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 GAGCCAATGAGAGAGGTAGGAGTAGAGATAGAACCAGGTATAACAGCAGAGAGAGGAAGA 1156
Query 1056 gagaaaaggaaagggagggtgaaaaagattgggagcgaggaagagaaaCCCAGAATGATA 1115
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1157 GAGAAAAGGAAAGGGAGGGTGAAAAAGATTGGGAGAGAGGAAGAGAAACCCAGAAAGATA 1216
Query 1116 GGGAGAAGTACAGAAGTAGTGATGTGGACTACGGTGAGATGAGGCACAAACAGTCCAGAC 1175
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1217 GGGAGAAGTACATAAGTAGTGATGTGGACTACGGTGAGATGAGGCACAAACAGTCTAGAA 1276
Query 1176 ATTCAAGAGATGATGCGGTAGATGACGTAGAAATGAGAAAGCCAAATTCTTCGAAGGCAC 1235
| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| |
Sbjct 1277 ACACAAGATATGATGCGGTAGATGACCTAGAAATGAGAAAGCCAAATTCTTTGAAGGCCC 1336
Query 1236 ATAATTCTAAGGGTGATAAGACAGAAGAAAAGTGGGGCAATGATGAAAGGTCCCGAAATG 1295
|||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1337 ATAATTCTAAGGGTGATAAGTTAGAAGAAACGTGGGCCAATGATGAAAGGTCCCGAAATG 1396
Query 1296 AGGATGGCCAAGATGATAATGACGAAGGACTTACATGGAAATCTCCTGAGGAAGAAGAAG 1355
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 AGGATGGTCAAGATGATAATGACGAAGGACTTACATGGAAATCTCCTGAGGAAGAAGAAG 1456
Query 1356 AAGAAGTACTAAATAGAATCAAGGAGGAGAGCAGGAAGCGAATGGAAGCCATACTGGAGA 1415
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1457 AAGAATTACTAAATAGAATCAAGGAAGAGAGCAGGAAGCGAATGGAAGCCATACTGGAGA 1516
Query 1416 AACATAAGAAGAAGCCCGAGCAGCAAAATGAACTTTTAACTCAGGATAATGGGAAAGATG 1475
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 AACATAAGAGGAAGCCCGAGCAGCAAAATGAACTTTTAACTCAGGATAATGGGAAAGATA 1576
Query 1476 TTGTTCAAGAAACTGGTGCTCCAGTGTCGACTTCTCCTGCAGTTGTCATAGCAGCTAATG 1535
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 TTGTTCCAGAAACTGGTGCTCCAGTGTCGACTTCTCCTGCAGTTGTCATAGCAGCTAATG 1636
Query 1536 TTGGTCAGGCTAAAACTAACTTGGACTTTGATACTGACGTTGCCAAGGCATCATTAATAG 1595
| || ||||| ||||||||||||||||||||||||| || |||||||||| |||||||||
Sbjct 1637 TAGGCCAGGCCAAAACTAACTTGGACTTTGATACTGTCGCTGCCAAGGCACCATTAATAG 1696
Query 1596 TCGGTGGGCCACCTACTATACT-TCCAATTTCAGACTCAGAGAAGAATCAAGCTCCAGCG 1654
|||||||||||||||||| | | ||||||||||||||||||||||||||||| ||||
Sbjct 1697 CCGGTGGGCCACCTACTAT-GTCTGGAATTTCAGACTCAGAGAAGAATCAAGCTCAAGCG 1755
Query 1655 GGGCTTGGTGAAGGTAGCCCGAAGAGTGAAAGATCAGCTGACATGTTTCATGATGATATC 1714
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1756 GGGCTTGGTGAAGGTAGCCCGAAGAGTGAAAGGTCAGCTGACATGTTTCATGATGATATC 1815
Query 1715 TTTGGAGAGTCCCCAGCTGGTGTTCGGAAAGTGGGAGGGAAAGGTGATGGTGTTCCCATG 1774
|||||||||||||| |||||| | || |||||||||||||||||||||||||||||||||
Sbjct 1816 TTTGGAGAGTCCCCGGCTGGTATCCGAAAAGTGGGAGGGAAAGGTGATGGTGTTCCCATG 1875
Query 1775 GTGAGGAGCGGGCTTCATGATAATTGGGATGATGCAGAGGGTTATTATAGCTATCAGTTT 1834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1876 GTGAGGAGCGGGCTTCATGATAATTGGGATGATGCAGAGGGTTATTATAGCTATCAGTTT 1935
Query 1835 GGCGAGTTACTTGATGGTAGATATGAAGTCATTGCTACTCATGGAAAAGGTGTCTTCTCT 1894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1936 GGCGAGTTACTTGATGGTAGATATGAAGTCATTGCTACTCATGGAAAAGGTGTCTTCTCT 1995
Query 1895 ACTGTGGTTCGTGCGAAAGACTTGAAAGCTGGACCAGCTGAACCTGAAGAGGTGGCTATA 1954
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1996 ACTGTGGTTCGTGCTAAAGACTTGAAAGCTGGACCAGCTGAACCTGAAGAGGTGGCAATA 2055
Query 1955 AAAATTATCCGTAACAATGAGACGATGCATAAAGCTGGCAAGATTGAGGTTCAAATATTG 2014
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2056 AAAATTATCCGTAACAATGAGACGATGCATAAAGCTGGAAAGATTGAGGTTCAAATATTG 2115
Query 2015 AAGAAGCTGGCTGGCGCTGACCGAGAGGACAGGCGCCACTGTGTTCGTTTTCTTTCAAGC 2074
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 2116 AAGAAGCTGGCAGGCGCTGACCGAGAAGACAGGCGCCACTGTGTTCGATTTCTTTCAAGC 2175
Query 2075 TTTAAGTACCGTAATCACCTTTGCTTGGTGTTTGAGTCGCTCCATTTGAATCTTCGTGAG 2134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2176 TTTAAGTACCGTAATCACCTTTGCTTGGTGTTTGAGTCGCTCCATTTGAATCTTCGTGAG 2235
Query 2135 GTCTTGAAGAAGTTTGGTCGCAACATTGGTCTCCAACTCTCTGCTGTTAGGGCTTATTCA 2194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2236 GTCTTGAAGAAGTTTGGTCGCAACATTGGTCTCCAACTCTCTGCTGTTAGGGCTTATTCA 2295
Query 2195 AAGCAGCTATTCATTGCCCTTAAACATCTGAAGAATTGTGGGGTTCTTCACTGCGATATA 2254
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 2296 AAGCAGCTATTCATTGCTCTTAAACATCTGAAGAATTGTGGGGTACTTCACTGCGATATA 2355
Query 2255 AAACCTGACAACATGCTGGTCAACGAGGGGAAAAATGTGTTAAAGCTTTGTGACTTCGGT 2314
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct 2356 AAACCTGACAACATGCTGGTCAATGAGGGGAAAAATGTCTTAAAGCTTTGTGATTTTGGT 2415
Query 2315 AATGCAATGTTTGCTGGCAAAAACGAAGTTACACCGTATCTTGTTAGTCGCTTTTACAGA 2374
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2416 AATGCAATGTTTGCAGGCAAAAACGAAGTTACACCGTATCTTGTTAGTCGCTTTTACAGA 2475
Query 2375 TCCCCTGAAATTAGTAAGTATCTGGGTCTCACCTATGACCATCCGTTGGATATATGGTCT 2434
||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||
Sbjct 2476 TCCCCTGAAATTA-T---T--CTGGGGCTCACCTATGACCATCCGTTGGATATATGGTCT 2529
Query 2435 GTTGGCTGCTGTCTGTATGAGCTTTATAGTGGAAAAGTTCTTTTCCCTGGCGCCACAAAC 2494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2530 GTTGGCTGCTGTCTGTATGAGCTTTATAGTGGAAAAGTTCTTTTCCCTGGCGCCACAAAC 2589
Query 2495 AATGATATGTTACGACTTCATATGGAACTGAAAGGTCCCTTCCCTAAAAAGATGCTTCGC 2554
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2590 AATGATATGTTACGCCTTCATATGGAACTGAAAGGTCCCTTCCCTAAAAAGATGCTTCGC 2649
Query 2555 AAGGGAGCATTTATTGATCAGCACTTTGATCATGACTTGAACTTTTATGCTACAGAGGAA 2614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2650 AAGGGAGCATTTATTGATCAGCACTTTGATCATGACTTGAACTTTTATGCTACAGAGGAA 2709
Query 2615 GACACCGTTAGTGGAAAGCTGATTAAAAGAATGATCGTAAACGTAAAGCCAAAAGATTTT 2674
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 2710 GACACCGTTAGTGGAAAGCTGATAAAAAGAATGATCGTAAACGTGAAGCCGAAAGATTTT 2769
Query 2675 GGTTCAATCATTAAAGGTTACCCTGGTGAGGATCCCAAGATGTTAGCACATTTCAGGGAT 2734
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2770 GGTTCCATCATTAAAGGTTACCCTGGTGAGGATCCCAAGATCTTAGCTCATTTCAGGGAT 2829
Query 2735 CTCTTGGACAAAATGTTCATCCTTGATCCCGAGAGGAGACTGACTGTGTCACAGGCATTA 2794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2830 CTCTTGGACAAAATGTTCATCCTTGATCCCGAGAGGAGACTGACTGTGTCACAGGCATTA 2889
Query 2795 GCTCACCCATTCATCACTGGCAAGTGAAACCACATTGCCACTTTC--TCTCTGTTATATC 2852
|||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 2890 GCTCACCCATTCATCACTGGCAAGTGAAACCACATTGCCATTTTCCCTCTCTGTTGTATC 2949
Query 2853 AGGAAATGCTGTTGTCCTAGATATCTGTACATTACACATCTTAATTACAATTTAAGGATC 2912
|||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||
Sbjct 2950 AGGAAATGCTGTTGTCCTAGATATCTGTACATTAAATATCTTAATTACCATTGAAGGATC 3009
Query 2913 TAATCTTTGAATTTTCTCTACCTTCCTTCTGCTGCCTGAGAGAGCTTTGATTACAATGTC 2972
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 3010 TAATCTTTGAATTTTCTCTACCTTCCCTCTGCTGCCTGAGAGAGCTTTGGTTACAATGTC 3069
Query 2973 GACATGGGTGGAGTTCTCATTACCGACGATTCTCAGGGGACTTTACTGGTTCTCTATTG 3031
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3070 GACATGGGTGGAGTTCTCATTACCGACGATTCTCAGGGGACTTTACTGGTTCTCTATTG 3128
> AT1G13350.2 | Symbols: | Protein kinase superfamily protein
| chr1:4572419-4576632 REVERSE LENGTH=2535
Length=2535
Score = 1074 bits (581), Expect = 0.0
Identities = 1026/1234 (83%), Gaps = 58/1234 (5%)
Strand=Plus/Plus
Query 1621 AATTTCAGACTCAGAGAAGA-ATCAAGC-TCCAGCGGGGCTTGGTGAAGGTAGCCCGAA- 1677
||||||||||||||| | || | | ||| |||| | |||||||| ||||| ||||| ||
Sbjct 1246 AATTTCAGACTCAGATAGGACA-CTAGCTTCCA-CAGGGCTTGGGGAAGGCAGCCCAAAG 1303
Query 1678 GAGTGAAAGATCAGCTGACATGTTTCA-TGATGATATCTTTGGAGAGTCCCCAGCTGGT- 1735
|| | ||| ||||| ||||||| |||| ||||||||||||||| ||||| ||||||| |
Sbjct 1304 GA-TAAAATATCAGATGACATG-TTCACTGATGATATCTTTGGGGAGTCTCCAGCTGATA 1361
Query 1736 GTTC-GGAAA---G-----TGGGAGGGAAAGGTG-ATGGTGTTCCCATGGTGAGGAGCGG 1785
| || | ||| | || |||||||||| | |||| |||| || || ||||| ||
Sbjct 1362 G-TCAGAAAATGGGCTATCTGCGAGGGAAAGG-GAATGGCATTCCTATTGTAAGGAGTGG 1419
Query 1786 GCTTC-ATGATAATTGGGATGATGCAGAGGGTTATTATAGCTATCAGTTTGGCGAGTTAC 1844
| || | |||||||||||||||||||| |||||||| || ||||| || || || |||
Sbjct 1420 AC-TCGACGATAATTGGGATGATGCAGAAGGTTATTACAGTTATCAATTAGGGGAACTAC 1478
Query 1845 TTGATGGTAGATATGAAGTCATTGCTACTCATGGAAAAGGTGTCTTCTCTACTGTGGTTC 1904
|||||| |||||||||| |||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1479 TTGATGATAGATATGAAATCATGGCTACTCATGGAAAAGGTGTCTTCTCTACCGTGGTGC 1538
Query 1905 GTGCGAAAGACTTGAAAGCTGGACCAGCTGAACCTGAAGAGGTGGCTATAAAAATTATCC 1964
| || |||||| ||||||| || || ||||||||| || ||||||||||||||||| |
Sbjct 1539 GGGCAAAAGACACAAAAGCTGAACTAGGTGAACCTGAGGAAGTGGCTATAAAAATTATTC 1598
Query 1965 GTAACAATGAGACGATGCATAAAGCTGGCAAGATTGAGGTTCAAATATTGAAGAAGCTGG 2024
| ||||||||||| |||||||| || ||| ||| |||| |||| |||||||||||||| |
Sbjct 1599 GGAACAATGAGACAATGCATAAGGCCGGCCAGACTGAGATTCAGATATTGAAGAAGCTAG 1658
Query 2025 CTGGCGCTGACCGAGAGGACAGGCGCCACTGTGTTCGTTTTCTTTCAAGC-TTTAAGTAC 2083
||||| |||||| |||| | | ||||||||| |||||||||||||||| | ||||||||
Sbjct 1659 CTGGCTCTGACCCAGAGAATAAGCGCCACTGCGTTCGTTTTCTTTCAA-CTTTTAAGTAT 1717
Query 2084 CGTAATCACCTTTGCTTGGTGTTTGAGTCGCTCCATTTGAATCTTCGTGAGGTCT-TGAA 2142
| || ||||||||||||||||||||||| || ||| ||||||| |||||| | | ||||
Sbjct 1718 AGGAACCACCTTTGCTTGGTGTTTGAGTCTCTTCATCTGAATCTCCGTGAGAT-TGTGAA 1776
Query 2143 GAAGTTTGGTCGCAACATTGGTCTCCAACTCTCTGCTGTTAGGGCT-TATTCAAAGCAGC 2201
||||| |||||||||||||||| | ||||| |||| |||||| | | ||| ||| ||||
Sbjct 1777 GAAGTATGGTCGCAACATTGGTATTCAACTATCTGGTGTTAGAG-TGTATGCAACGCAGT 1835
Query 2202 TATTCAT-TGCCCTTAAACATCTGAAGAATTGTGGGGTTCTTCACTGCGATATAAAACCT 2260
||||||| | ||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1836 TATTCATAT-CCCTTAAACATCTCAAGAACTGTGGGGTTCTTCACTGCGATATAAAGCCT 1894
Query 2261 GACAACATGCTGGTCAACGAGGGGAA-AAATGTGTTAAAGCTTTGTGACTTCGGTAATGC 2319
|||||||||||||| || || ||||| ||| |||||||||||||||||| |||| |||
Sbjct 1895 GACAACATGCTGGTGAATGA-GGGAAGAAACACGTTAAAGCTTTGTGACTTTGGTAGTGC 1953
Query 2320 AATGTTTGCTGGCAAAAACGAAGTTACACCGTATCTTGTTAGTCGCTTTTACAGATCCCC 2379
|||||||||||| | ||||||||||||||| ||||||||||||||||| |||||| | ||
Sbjct 1954 AATGTTTGCTGGTACAAACGAAGTTACACCATATCTTGTTAGTCGCTTCTACAGAGCTCC 2013
Query 2380 TGAAATTAGTAAGTATCTGGGTC-TCACCTATGACCATCCGTTGGATATATGGTCTGTTG 2438
| || | ||| | ||| || | || |||| ||||||||||| ||||||||||| ||||
Sbjct 2014 AG-AA--A-TAA-T-TCTTGGACTTC-CCTACGACCATCCGTTAGATATATGGTCAGTTG 2066
Query 2439 GCTGCTGTCTGTATGAGCTTTATAG-TGGAAAAGTTCTTTTCCCTGGCGCCACAAACAAT 2497
| ||||||||||||||||||| ||| |||||| || | ||||||||| |||||||||||
Sbjct 2067 GTTGCTGTCTGTATGAGCTTTTTAGCGGGAAAA-TTATGTTCCCTGGCTCCACAAACAAT 2125
Query 2498 GATATGTTACGACTTCATATGGAACTGAAAGGTCCCTTCCCTAAAAAGATGCTTCGCAAG 2557
|| |||||||| || |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2126 GAAATGTTACGCCTGCATATGGAACTGAAAGGTGCCTTCCCTAAAAAGATGCTTCGCAAG 2185
Query 2558 GGAGCATTTATTGATCAGCACTTTGATCATGACTTGAA-CTTTTATGCTACAGAGGAAGA 2616
||||||||||| ||||||||||||||| | ||||| | ||| |||||||||||||| ||
Sbjct 2186 GGAGCATTTATCGATCAGCACTTTGATAAGGACTT-ATGCTTCTATGCTACAGAGGAGGA 2244
Query 2617 CACCGTTAGTGGAAAG-CTGATTAAA-AGAATGATCGTAAACGTAAAGCCAAAAGATTTT 2674
| |||| | ||||| | | ||| |||||||| |||||| ||||||||||||| |||
Sbjct 2245 TAGTGTTACTAGAAAGACA-AC-AAAGAGAATGATGGTAAACATAAAGCCAAAAGAATTT 2302
Query 2675 GGTTCAATCATTAAAG---GTTACCCTGG-TGAGGATCCCAAGATGTTAGCACATTTCAG 2730
|||||| | |||||| |||| || ||| ||| |||| |||| | ||||||||
Sbjct 2303 GGTTCAGTAATTAAACAACGTTATAA-GGATGAAGATAGCAAGTTGTTGGTTCATTTCAG 2361
Query 2731 GGATCT-CTTGGACAAAATGTTCATCCTTGATCC-CGAGAGGAGACTGACTGTGTCACAG 2788
|||||| || | ||| ||| ||||| |||||||| | ||| |||| | || |||||||||
Sbjct 2362 GGATCTTCTAG-ACAGAATTTTCATACTTGATCCTC-AGAAGAGAATTACAGTGTCACAG 2419
Query 2789 GCATTAGCTCACCCATTCATCACTGGCAAGTGAA 2822
||||||||||||||||||||||| ||||||||||
Sbjct 2420 GCATTAGCTCACCCATTCATCACGGGCAAGTGAA 2453
> AT3G53640.1 | Symbols: | Protein kinase superfamily protein
| chr3:19887007-19888935 REVERSE LENGTH=1929
Length=1929
Score = 900 bits (487), Expect = 0.0
Identities = 945/1158 (82%), Gaps = 64/1158 (6%)
Strand=Plus/Plus
Query 1693 TGACATGTTTCA-TGATGATATCTTTGGAGAGTC-CC-C-AGCTGGT-GT--TCGGAAAG 1745
||||||| |||| ||||||||||||||| ||||| || | ||||| | || |||| ||
Sbjct 807 TGACATG-TTCAGTGATGATATCTTTGGGGAGTCTCCTCTAGCTGATGGTACTCGG-AA- 863
Query 1746 TGGGAGGGAAAGGTG-ATGGTGTTCCCATGGTGAGGAGCGGGCTTC-ATGATAATTGGGA 1803
|||| || || | |||||| | || ||||| || | || |||||||||||||
Sbjct 864 ----AGGG-AA--TGCA-CTTGTTCCTTTTGTAAGGAGTGGAC-TCAATGATAATTGGGA 914
Query 1804 TGATGCAGAGGGTTATTATAGCTATCAGTTTGGCGAGTTACTTGATGGTAGATATGAAGT 1863
||||||||| |||||||| || |||||| |||| || ||||||||| |||||||||| |
Sbjct 915 TGATGCAGAAGGTTATTACAGTTATCAGCTTGGTGAACTACTTGATGATAGATATGAAAT 974
Query 1864 CATTGCTACTCATGGAAAAGGTGTCTTCTCTACTGTGGTTCGTGCGAAAGACTTGAAAGC 1923
||| ||||||||||| |||||||| |||||||| ||||| ||||| |||||| ||| |
Sbjct 975 CATGGCTACTCATGGGAAAGGTGTATTCTCTACCGTGGTGCGTGCAAAAGACACAAAACC 1034
Query 1924 TGGA-CCAGCTGAACCTGAAGAGGTGGCTATAAAAATTATCCGTAACAATGAGACGATGC 1982
| || | || ||||||||| || ||||||||||||||||| || || |||||||| ||||
Sbjct 1035 T-GAGCTAGGTGAACCTGAGGAAGTGGCTATAAAAATTATTCGGAAAAATGAGACAATGC 1093
Query 1983 ATAAAGCTGGCAAGATTGAGGTTCAAATATTGAAGAAGCTGGCTGGCGCTGACCGAGAGG 2042
|||| |||||| || |||| ||| |||||||||||||| | | || |||||| ||||
Sbjct 1094 ATAAGGCTGGCCAGGCTGAGATTCGGATATTGAAGAAGCTAGTTTGCTCTGACCCAGAGA 1153
Query 2043 ACAGGCGCCACTGTGTTCGTTTTCTTTCAAGC-TTT-AAGTACCGTAATCACCTTTGCTT 2100
| | || |||||| || ||| ||||||||| | ||| || || | || |||||||||||
Sbjct 1154 ATAAGCACCACTGCGTCCGTCTTCTTTCAA-CTTTTGAA-TATAGGAACCACCTTTGCTT 1211
Query 2101 GGTGTTTGAGTCGCTCCATTTGAATCTTCGTGAGGTCT-TGAAGAAGTTTGGTCG-CAAC 2158
|||||||||||| || ||| ||||||| ||||| || | |||||||| ||||| | ||||
Sbjct 1212 GGTGTTTGAGTCTCTTCATCTGAATCTCCGTGAAGT-TGTGAAGAAGATTGGT-GTCAAC 1269
Query 2159 ATTGGTCTCCAACTCTCTGCTGTTAGGGCT-TATTCAAAGCAGCTATTCAT-TGCCCTTA 2216
|||||||| |||| | || |||||| | | ||| | ||||| ||||||| | ||||||
Sbjct 1270 ATTGGTCTAAAACTATATGATGTTAGAG-TGTATGCTGAGCAGTTATTCATAT-CCCTTA 1327
Query 2217 AACATCTGAAGAATTGTGGGGTTCTTCACTGCGATATAAAACCTGACAACATGCTGGTCA 2276
||||||| ||||| |||||||||||||||||||||||||| ||||| ||||| || | |
Sbjct 1328 AACATCTCAAGAACTGTGGGGTTCTTCACTGCGATATAAAGCCTGATAACATACTAATGA 1387
Query 2277 ACGAGGGGAA-AAATGTGTTAAAGCTTTGTGACTTCGGTAATGCAATGTTTGCTGGCAAA 2335
| || ||||| ||| |||||||||||||||| || |||| ||||||||||||||| ||
Sbjct 1388 ATGA-GGGAAGAAACATGTTAAAGCTTTGTGATTTTGGTAGTGCAATGTTTGCTGGTGAA 1446
Query 2336 AACGAAGTTACACCGTATCTTGTTAGTCGCTTT-TACAGATCCCCTGAAATTAGTAAGTA 2394
||| |||||||||| |||||||||||||| ||| |||||| | || | || | | | |
Sbjct 1447 AACCAAGTTACACCATATCTTGTTAGTCG-TTTCTACAGAGCTCCAG-AA--A-TCA-T- 1499
Query 2395 TCTGGGTCTCA-CCTATGACCATCCGTTGGATATATGGTCTGTTGGCTGCTGTCTGTATG 2453
||| || || | |||| ||||||||||| ||||| ||||| ||||| || ||||||||||
Sbjct 1500 TCTTGGACT-ACCCTACGACCATCCGTTAGATATTTGGTCAGTTGGTTGTTGTCTGTATG 1558
Query 2454 AGCTTTATAG-TGGAAAAGTTCTTTTCCCTGGCGCCACAAACAATGATATGTTACGACTT 2512
|||||||||| |||||| || | ||||||||| |||||||||||||||||||||| ||
Sbjct 1559 AGCTTTATAGCGGGAAAA-TTATGTTCCCTGGCTCCACAAACAATGATATGTTACGCCTG 1617
Query 2513 CATATGGAACTGAAAGGTCCCTTCCCTAAAAAGATGCTTCGCAAGGGAGCATTTATTGAT 2572
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1618 CATATGGAACTGAAAGGTCCCTTCCCTAAAAAGATGCTTCGCAAAGGAGCATTTATCGAT 1677
Query 2573 CAGCACTTTGATCATGACTTGAA-CTTTTATGCTACAGAGGAAGACACCGTTAGTGGAAA 2631
|| ||||||||| | ||||| | ||| |||||||||||||| || | |||| ||||||
Sbjct 1678 CAACACTTTGATAAGGACTT-ATGCTTCTATGCTACAGAGGAGGATAGTGTTACTGGAAA 1736
Query 2632 G-CTGATTAAA-AGAATGATCGTAAACGTAAAGCCAAAAGATTTTGGTTCAATCATTAAA 2689
| | || || ||||| || || |||||||||||||||||||| |||||| | |||| |
Sbjct 1737 GACA-AT-AAGGAGAATAATGGTCAACGTAAAGCCAAAAGATTTAGGTTCAGTAATTAGA 1794
Query 2690 -G--GTTACCCTGG-TGAGGATCCCAAGATGTTAGCACATTTCAGGGATCTCTTGGACAA 2745
| |||| || ||| ||||||||| |||| | ||||||||| |||| ||||||||
Sbjct 1795 CGACGTTATGA-GGATGAAGATCCCAAGGTGTTGGTTCATTTCAGGAATCTTTTGGACAA 1853
Query 2746 AATGTTCATC-CTTGATCC-CGAGAGGAGACTGACTGTGTCACAGGCATTAGCTCACCCA 2803
||| |||| | |||||||| | | || ||||| || ||||||||||||||||||||||||
Sbjct 1854 AATTTTCA-CACTTGATCCTCAAAAG-AGACTTACAGTGTCACAGGCATTAGCTCACCCA 1911
Query 2804 TTCATCACTGGCAAGTGA 2821
|||||||| |||||||||
Sbjct 1912 TTCATCACGGGCAAGTGA 1929
> AT3G25826.1 | Symbols: | transposable element gene | chr3:9444551-9446811
REVERSE LENGTH=2261
Length=2261
Score = 75.0 bits (40), Expect = 4e-12
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 2956 GCTTTGATTACAATGTCGACATGGGTGGAGTTCTCATTACCGA 2998
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2219 GCTTTGGTTACAATGTCGACATGGGTGGAGTTCTCATTACCGA 2261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 156771696875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5