BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484358
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25920.1 | Symbols: RPL15 | ribosomal protein L15 | chr3:949... 1389 0.0
> AT3G25920.1 | Symbols: RPL15 | ribosomal protein L15 | chr3:9491055-9492635
REVERSE LENGTH=1124
Length=1124
Score = 1389 bits (752), Expect = 0.0
Identities = 855/904 (95%), Gaps = 9/904 (1%)
Strand=Plus/Plus
Query 19 CCTTATCCTTGAAGCTTT-TTTCATCTGTTGTTCCCTGTGACCATGGCTGCTCCACTGTC 77
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 35 CCTTATCCTTGAAGCTTTGTTTCATCTGTTGTTCCCTGTGACCATGGCTACTCCACTCTC 94
Query 78 AATCTCATCAAATCCTCTCACCTCCCGCCATTGTTACCGTCTCCACTT-TCCTTCTACTT 136
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 95 AATCTCATCAAATCCTCTCACCTCCCGCCATTGTTACCGTCTCCACTTAT-CTTCTACTT 153
Query 137 CGTTCAAGGGAAATGTAAGCGTTTTGGGAGCAAACCCAAGTCAGATTCTGTCTCTGAAAC 196
| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 154 CATTCAAGGGAAATGTAAGTGTTTTGGGGGCAAACCCAAGTCAGATTCTATCTCTGAAAC 213
Query 197 TCAACCAAAAGCTTAAAACGAGAAATCAACAACAATCTGTGAGACCACTTGTTGTGGTCA 256
||||||||| |||||||||||||| ||||| |||| || |||||| ||||||||||| |
Sbjct 214 TCAACCAAACCCTTAAAACGAGAAACCAACAGCAATTTGCGAGACCCCTTGTTGTGGTTA 273
Query 257 GCCAAGCAGCGG---CGACGTCGGAAGTTGTAGCTCCGGAGAGATTCCGTTTGGATAATC 313
||||| | |||| || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 274 GCCAAACGGCGGCTACGTCGTCGGCAGTTGTAGCTCCGGAGAGATTCCGTTTGGATAATC 333
Query 314 TTGGACCACAACCAGGTTCGAGAAAGAGGCAGAAGAGAAAAGGTAGAGGTATATCTGCAG 373
|||||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||
Sbjct 334 TTGGACCACAGCCAGGTTCGAGGAAGAAGCAGAAGAGAAAAGGTAGAGGTATCTCTGCAG 393
Query 374 GACAAGGAGCAAGTTGTGGTTTTGGTATGAGAGGTCAGAAATCAAGATCGGGTCCTGGGA 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 GACAAGGAGCAAGTTGTGGTTTTGGTATGAGAGGTCAGAAATCAAGATCGGGTCCTGGGA 453
Query 434 TTATGAGAGGCTTTGAAGGAGGTCAAACTGCTCTTTATCGTCGTCTTCCCAAACTTAGAG 493
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TTATGAGAGGCTTTGAAGGTGGTCAAACTGCTCTTTATCGTCGTCTTCCCAAACTTAGAG 513
Query 494 GAATCGCCGGAGGTATGCGTTCAGGATTACCCAAATACTTACCGGTTAATCTTAAAGACA 553
||||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 514 GAATCGCTGGAGGTATGCGTTCAGGATTACCTAAATACTTACCGGTTAATATCAAAGACA 573
Query 554 TCGAAACAGCTGGGTTTCAGGAGGGAGATGAAGTGTCATTGGAGACATTGAAGCAAAAGG 613
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 574 TAGAAACAGCTGGGTTTCAAGAGGGAGATGAAGTGTCATTGGAGACATTGAAGCAAAAGG 633
Query 614 GTTTGATCAATCCTTCAGGGAGGGAAAGGAAACTCCCTCTAAAGATTCTGGGTACCGGAG 673
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 634 GTTTGATTAATCCTTCAGGGAGAGAAAGGAAACTCCCTCTTAAGATTCTGGGTACAGGAG 693
Query 674 AACTAAGCATGAAGCTCACCTTCAAAGCTCGTGCCTTCTCAACACAAGCAAAAGAGAAGC 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 AACTAAGCATGAAGCTCACCTTCAAAGCTCGTGCCTTCTCAACACAAGCAAAAGAGAAGC 753
Query 734 TTGAAGCTTCAGGATGTACACTCACTGTTTTGCCCGGAAGAAAGAAATGGGTTAAGCCAT 793
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 754 TTGAAGCTTCAGGTTGTACACTCACTGTGTTGCCGGGAAGAAAGAAATGGGTTAAGCCAT 813
Query 794 CGGTTGCAAAGAACCAAGCACGAGCAGACGAATACTTTGCCAAGAAGAGAGCTGCAGCAG 853
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 814 CTGTTGCAAAGAACCAAGCACGAGCAGATGAATACTTTGCCAAGAAGAGAGCTGCAGCAG 873
Query 854 CAGAAGCA--A-CTTCAGAGCCAGCAGCTTCTGCTTAAATTACTTCATTTTCAAGCTCTT 910
|||||||| | |||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 874 CAGAAGCAGCAACTTCAGAGCCAGCAGCCTCTGCTTAAATTACTTCAGTTTCAAGCTCTT 933
Query 911 TTTA 914
||||
Sbjct 934 TTTA 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47571737209
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5