BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484365
Length=2131
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26030.1 | Symbols: ATB' DELTA | serine/threonine protein ph... 3323 0.0
> AT3G26030.1 | Symbols: ATB' DELTA | serine/threonine protein
phosphatase 2A 55 kDa regulatory subunit B prime delta | chr3:9517313-9519559
FORWARD LENGTH=2161
Length=2161
Score = 3323 bits (1799), Expect = 0.0
Identities = 2053/2168 (95%), Gaps = 48/2168 (2%)
Strand=Plus/Plus
Query 1 TGCCAACGAAGCAATAGCTATGAAAAGCTAAACCcttt-cttcttcttcttcttcttctt 59
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2 TGCCAACGAAGCAATAGCTATGAAAAGCTAAACCCTTTCCTTCTTCTTCTTCTTCTTCTT 61
Query 60 cttcttcAATTGTTTAGATCACTTGGGTCAAACCCAAGTCTGCTTCTTTCTATGATTCAT 119
||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 62 CTTCTTCGATTGTTTAGATTACTTGGGTTTGACCCAAGTTTGCTTCTTTCTATGATTCAT 121
Query 120 CAATCTAGATCTTCCTATCTGGGTCCAGAAACGATTCACGCGCTTCGTTCATGATATAAA 179
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 122 CAATCTAGATCTTGCTATCTGGGTCCAGAAACGATTCACGCGCTTCATTCATGATATAAA 181
Query 180 GTTACTACC----TTTT-TCTT-GCTTCTGGGTCATGGTTCTGTCTGCTTTTCGTCTTTT 233
||||||||| |||| | || |||||||||||||||| |||||||||||||||||||
Sbjct 182 GTTACTACCTTTTTTTTATTTTACCTTCTGGGTCATGGTTTTGTCTGCTTTTCGTCTTTT 241
Query 234 GCTTTTGTCTGGATGATTCATTAATCTCT-GAGATCTAGTATGTTCACAAGAGTTGTTCT 292
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 242 GCTTTTGTCTGGATGATTCA-TAATCTCTCGAGATCTATTATGTTCACAAGAGTTGTTCT 300
Query 293 TATGCGTGGTGAGATGATCTTAGGAGTAG-TTCAGTATCTTTCTTCAATTCGGATTTTGA 351
||||||||||||||||||||||||||| | |||| |||||||||||||||||| |||| |
Sbjct 301 TATGCGTGGTGAGATGATCTTAGGAGT-GTTTCACTATCTTTCTTCAATTCGGGTTTTTA 359
Query 352 GTTTCTGAGATCTGttttttttGCTTAAAGAATCCGATCTGAGTTTGAGGAAG-TTGACC 410
|||||||||||||| |||||| ||||||| |||||||||||||||||| |||||
Sbjct 360 GTTTCTGAGATCTG---TTTTTG----AAGAATCTGATCTGAGTTTGAGGAAGTTTGACT 412
Query 411 AATATAGATC---GAAGATGTTTAAGCAGATACTTGGGAAGCTTCCTAAGAAAACCTCTG 467
|| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 413 AA-ATAGATCGAAGAAGATGTTTAAGCAGATACTTGGGAAGCTTCCTAAGAAAACTTCTG 471
Query 468 CTAAGTTTTGGGATAATGGTGACTCCCAAACTCCAGAT---AACAACAATC-A--AGGAG 521
|||||||||||||||||||||| |||||||||| |||| |||||||||| | |||||
Sbjct 472 CTAAGTTTTGGGATAATGGTGAATCCCAAACTCTAGATAACAACAACAATCAAGGAGGAG 531
Query 522 GTGATGAAGTTTTAAGCCAGAGATCATCATCAAATGGAGATAC---TTTGGATTGTG--T 576
||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| |
Sbjct 532 GTGATGAAGTTTTAAGCCAGAGAACGTCATCAAATGGAGATACTAGTTTGGATTGTGTTT 591
Query 577 -TTCTTTTGATGTATTGCCAAGGTTGAGAGATGTTTCCATCTCTGAGAAGCAAGAACTGT 635
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CTTCTTTTGATGTATTGCCAAGGTTGAGAGATGTTTCCATCTCTGAGAAGCAAGAACTGT 651
Query 636 TTCTTAAGAAGCTTAGACTATGTTGTGTTGTGTTTGATTTTGTCGCCGAGCCTCAACAGA 695
|||||||||||||||||||||||||| | |||||||||||||| || |||||||||||||
Sbjct 652 TTCTTAAGAAGCTTAGACTATGTTGTCTAGTGTTTGATTTTGTAGCTGAGCCTCAACAGA 711
Query 696 ACTTCAAGGAGAAAGAGATTAAAAGGCAAACACTTCTTGAAGTTGTGGATTATGTTATCT 755
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 712 ACTTCAAGGAGAAAGAGATCAAAAGGCAAACACTTCTTGAAGTTGTGGATTATGTTATCT 771
Query 756 CTTCAGGGAATGGCAAGTTTCCTGAATCAGTTATTCAAGAAGCTACGAAGATGATTTCGG 815
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 772 CTTCAGGGAATGGCAAGTTCCCTGAATCAGTTATTCAAGAAGCTACCAAGATGATTTCGG 831
Query 816 CGAATCTCTTTAGTAATCCTCATCGACAATGGAAGAACAAAACTCCTGAAGCATTGGATT 875
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 832 CGAATCTCTTTAGTAATCCTCATCGACAATGGAAGAACAAAACTCCTGAGGCATTGGATT 891
Query 876 TGGAAGAAGAAGAAGGATCTTTGAATCCTTCTTGGCCTCACTTGCAGATTGTTTATGAGT 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TGGAAGAAGAAGAAGGATCTTTGAATCCTTCTTGGCCTCACTTGCAGATTGTTTATGAGT 951
Query 936 TCCTTCTAAGAATCGTCGCGTCTCCCAACACTGACCCCAAGATATCCAAGAAATACATCG 995
||||| | |||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 952 TCCTTTTGAGAATCGTTGCATCTCCCAACACAGACCCCAAGATATCCAAGAAATACATCG 1011
Query 996 ATCATACATTCGTTCTCAAGCTATTGGATTTGTTTGACTCTGAAGATCCGAGGGAAAGAG 1055
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1012 ATCATACATTCGTTCTCAAGCTATTGGATTTGTTTGATTCTGAAGATCCGAGGGAAAGAG 1071
Query 1056 AGTATCTGAAAACGATACTTCACCGGATCTACGGGAGGTTTATGGTTCATCGCCCGTTCA 1115
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1072 AGTATCTGAAAACGATACTTCACCGCATCTACGGGAGGTTTATGGTTCATCGCCCGTTCA 1131
Query 1116 TCAGGAAAACTATGAACAACATCTTGTATGATTTTATATTCGAGACCGGGAAACACTCAG 1175
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1132 TCAGGAAAACTATGAACAACATCTTGTATGATTTTATATTCGAGACAGGGAAACACTCGG 1191
Query 1176 GAATCGCCGAGTTTCTTGAAGTTTTAGGATCCATCATCAATGGATTCGCTTTACCACTCA 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GAATCGCCGAGTTTCTTGAAGTTTTAGGATCCATCATCAATGGATTCGCTTTACCACTCA 1251
Query 1236 AGGAAGAACACAAGCTCTTCCTTACTCGTGTCTTGATTCCTCTACACAAACTGAAATGCT 1295
||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1252 AGGAAGAACACAAGCTCTTTCTTACTCGTGTCTTGATTCCTCTGCACAAGCTGAAATGCT 1311
Query 1296 TACCAAATTACCATCAGCAGCTTTCTTATTGCGTTATACAGTTTGTTGAGAAAGATTGTA 1355
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1312 TACCAAATTACCATCAACAGCTTTCTTACTGCGTTATACAGTTTGTTGAGAAAGATTGTA 1371
Query 1356 AGCTCGCGGATACCGTTATTAGAGGGATGTTGAAGTACTGGCCTGTTACTAATAGCTCTA 1415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1372 AGCTCGCGGATACCGTTATTAGAGGGATGTTGAAGTACTGGCCTGTTACTAATAGCGCTA 1431
Query 1416 AAGAAATCATGTTCTTGAATGAATTGGAGGAGATATTAGAAGCAACTCAATTAACAGAGT 1475
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1432 AAGAAATCATGTTCTTGAATGAATTGGAGGAGATACTAGAAGCAACTCAATTAACAGAGT 1491
Query 1476 TTGAACGGTGTATGATTCCGCTCTCTCGCCAAATTGCTCAGTGCTTAAGCAGTTCTCACT 1535
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1492 TTGAACGGTGTATGGTTCCGCTCTCTCGCCAAATTGCTCAGTGCTTGAGCAGTTCTCACT 1551
Query 1536 TTCAGGTAGCAGAACGGGCTTTATACTTATGGAACAACGATCATGTCACTAATTTGGTGA 1595
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1552 TTCAGGTAGCGGAACGGGCTTTATACTTATGGAACAACGATCATGTCACTAATTTAGTGA 1611
Query 1596 GACAGAACAGTAGAATCATTTTACCGATAGTGTTTCCCGCTTTGGAGAAAAACGGTAGCA 1655
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1612 GACAGAACAGTAGAATCATTTTACCTATAGTGTTTCCCGCTTTGGAGAAAAACGGTAGCA 1671
Query 1656 GCCATTGGAATCAGGCTGTGAAGAACTTGACCGAGAATGTTCTCAAGGTTTTGTCGGATA 1715
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1672 GCCATTGGAATCAGGCTGTGAAGAACTTGACAGAGAATGTTCTCAAGGTTTTGTCCGATA 1731
Query 1716 CAAATCCAGATTTATTCGAAGAATGTTTGCGCAAGTTCCAAGAAGATCAGCAAAAAGCAG 1775
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1732 CAAATCCTGATTTATTCGAAGAATGTTTGCACAAGTTCCAAGAAGATCAGCAAAAAGCAG 1791
Query 1776 AAGATACTAAAAAGAAGAATGGAGAAACCTGGAAACAGCTAGAGGAGATTGTTGCTTCAA 1835
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1792 AAGATACTAAAAAGAAGAATGGAGAAACCTGGAGACAGCTAGAGGAGATTGTTGCTTCAA 1851
Query 1836 TGGCGAAGTAAGAGTTTTT-CTGCACTTTACGCGATGCAACAAGAA-TCGGTTTATTGTT 1893
||||||||||||||||||| |||||||||||| ||| ||||||||| |||||||||||||
Sbjct 1852 TGGCGAAGTAAGAGTTTTTTCTGCACTTTACGTGATTCAACAAGAAATCGGTTTATTGTT 1911
Query 1894 TTGTTTT----C-TTTACGCCTGAAAGGTATATACATTTACTTTGCTTTGATTGCTTCA- 1947
||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1912 TTGTTTTGTTTCCTTTACGCCTGAAAGGTATATACATTTACTTTGCTTTGCTTGCTTCAT 1971
Query 1948 --A-GTCTCTGGTTTCGACTTCAAGACTAGTTTAATTCAGTTAAACAGTGTGAGATTTTA 2004
| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1972 TTAAGTATCTGGTTTCGACTTTAAGACTAGTTTAATTCAGTTAAACAGTGTGAGATTTTA 2031
Query 2005 CCTCTTTCAGTTCTTGATTTGTCTGTATACTTCGTTCATGTAAACATCTTGTTATGAAAA 2064
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2032 CCTTTTTCAGTTCTTGATTTGTCTGTATACTTGGTTCATGTAAACATCTTGTTATGAAAA 2091
Query 2065 CACGAATATTCTATTGTTTGAAGTCACTTAGTTTAT-AGGTGAAAGAGATGGCTCTAATA 2123
||||||| ||||||||| |||||||||||||||||| || |||||||||| |||||||||
Sbjct 2092 CACGAATTTTCTATTGTCTGAAGTCACTTAGTTTATCAG-TGAAAGAGATTGCTCTAATA 2150
Query 2124 TTAAAATT 2131
| ||||||
Sbjct 2151 TAAAAATT 2158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105672147225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5