BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484369 Length=1190 Score E Sequences producing significant alignments: (Bits) Value AT3G26070.1 | Symbols: | Plastid-lipid associated protein PAP ... 1539 0.0 AT3G26080.1 | Symbols: | plastid-lipid associated protein PAP ... 813 0.0 AT3G26060.2 | Symbols: ATPRX Q | Thioredoxin superfamily protei... 76.8 4e-13 > AT3G26070.1 | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr3:9526714-9528583 FORWARD LENGTH=1303 Length=1303 Score = 1539 bits (833), Expect = 0.0 Identities = 1050/1148 (91%), Gaps = 41/1148 (4%) Strand=Plus/Plus Query 1 CACCGAGGGCCTCTCGTTTCATGAGAGAGAGaaaaaaaaTCTTATCTTTGTGACAGCGGT 60 |||||||||||||||||||||||||||| | | |||||||||||||||| ||||| |||| Sbjct 1 CACCGAGGGCCTCTCGTTTCATGAGAGA-A-ACAAAAAATCTTATCTTTCTGACAACGGT 58 Query 61 GGTGGTGTGTGATGTTGTCAGCCATGGCAAAGACAGAGCAACAACGA--TCTCTCTCTTT 118 ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 59 GGTGGTGTGTGATGTTGTCAGCCATGGCAAAGACAGAGCTACAACGATCTCTCTCTCTTT 118 Query 119 TC-CCTTCTTCTGTGTCTGTCTTTAAACAGAGTCTCTTTGAAACGAAGCAGCTTTGTCCT 177 || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 119 TCTTCTTCTTCTGTGTCTGTCTTTAAATAGAGTCTCTTTGAAACGAAGCAGCTTTGTCCT 178 Query 178 GTTTTGATATCCATGGCTTTACCTTCGTGCTTAAAGACTGGAGGTTTAATGTCTCCGGCC 237 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 179 GTTCTGATATCCATGGCTTTACCTTCGTGCTTAAAGACTGGAGCTTTAATGTCTCCGGCC 238 Query 238 ACTGGTTTTAATCTTTCCGGCAGTCTGATGAAGTTGGACAGTGGTTTTGCCGTTCCGATA 297 ||||| |||||| ||||||||||||| ||||||| ||||| || || |||||||||| | Sbjct 239 ACTGGATTTAATTTTTCCGGCAGTCTTATGAAGTCAGACAGCGGCTTCGCCGTTCCGACA 298 Query 298 AAGTTACAGAGTAATCGAAAAGGTGATCGAGAAAGATTGAGAATCCAAGCTGTCTTCAGT 357 ||||||||||||| |||||||||||||||||| ||||||||| |||||||| | |||||| Sbjct 299 AAGTTACAGAGTACTCGAAAAGGTGATCGAGAGAGATTGAGAGTCCAAGCTATTTTCAGT 358 Query 358 TTCCCTCCTGCGTTTCTGACAAGAAACGGTCGAGCTGAGAAGCAGAAACAGCTCAAACAA 417 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 359 TTCCCTCCTGCGTTTCTGACAAGAAACGGTCGAGCTGAGAAACAGAAACAGCTCAAACAA 418 Query 418 GAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCTACGGCTTCACCTGATGACCAG 477 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 419 GAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCTACGGCCTCGCCTGATGACCAG 478 Query 478 CTACGTATTGATCAGTTAGCGCGTAAAGTGGAAGCTGTTAATCCCACCAAGGAGCCTCTG 537 || || ||||||||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 479 CTTCGGATTGATCAGTTAGCGCGTAAAGTGGAAGCAGTTAATCCCACCAAGGAGCCTTTG 538 Query 538 AAATCTGATTTGATCAATGGAAAATGGGAACTCATTTATACAACTTCTGCTTCGATTTTG 597 || ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 539 AAGTCTGATTTGGTCAATGGAAAATGGGAGCTCATTTATACAACCTCTGCTTCGATTTTG 598 Query 598 CAGGCAAAGAAACCGAGGTTCTTAAGATCAATAACCAACTACCAATCTATCAATGTGGAT 657 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 CAGGCAAAGAAACCAAGGTTCTTAAGATCAATAACCAACTACCAATCTATCAATGTGGAT 658 Query 658 ACACTGAAGGTGCAAAACATGGAGACTTGGCCTTTCTATAACTCGGTAACTGGAGACCTG 717 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 659 ACACTTAAGGTGCAAAACATGGAGACTTGGCCTTTCTATAACTCGGTAACTGGAGACATA 718 Query 718 AAACCCCTCAATTCGAAGAAAGTTGCTGTGAAACTCCAAGTGTTTAAAATTCTCGGCTTT 777 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 719 AAACCCCTCAATTCGAAGAAGGTTGCTGTGAAACTCCAAGTGTTTAAAATTCTCGGATTT 778 Query 778 ATTCCTGTAAAAGCACCTGATAGCGCACGCGGTGAACTAGAGATTACTTATGTGGACGAA 837 |||||| ||||||||||||||||||| ||||||||||| |||||||| ||||||||||| Sbjct 779 ATTCCTATAAAAGCACCTGATAGCGCCCGCGGTGAACTTGAGATTACCTATGTGGACGAG 838 Query 838 GAACTACGGTTATCAAGGGGTGACAAAGGGAACTTGTTTATATTGAAGATGTTCGATCCC 897 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 839 GAACTACGGTTATCAAGAGGTGACAAAGGGAACTTGTTTATATTGAAGATGTTTGATCCC 898 Query 898 ACTTATCGAATCCCTCTCTGATCT-CC--------G--A--G--CCATCCATCATACAT- 941 ||||||||||||||||| |||||| || | | | ||||||||||||||| Sbjct 899 ACTTATCGAATCCCTCTTTGATCTACCAAACAAATGGTACCGAGCCATCCATCATACATA 958 Query 942 -T-G-T-C---T--CT----CT-TC---ATCATGTATGTAATCTAACATAA-AAATAATT 983 | | | | | || || || ||||||||||||||||||||||| ||| |||| Sbjct 959 CTTGCTACAACTTGCTATGTCTCTCTTCATCATGTATGTAATCTAACATAAGAAA-AATT 1017 Query 984 AATAAGAGGGAATAAAAAGAGACGAGCTTTTGTCATTTTTTCAACTTGTTCAAATCAAAG 1043 |||||||||||| |||| ||||||||||| ||||||| |||||||||||||||||||||| Sbjct 1018 AATAAGAGGGAA-AAAATGAGACGAGCTTCTGTCATTGTTTCAACTTGTTCAAATCAAAG 1076 Query 1044 ATTCTGAATCTTGATTTGGTTGAACAGTTGGCTCCAATCCTAAACTATATGATACTGAAT 1103 ||||||||||||||||||||||| ||||| | |||||||||||||||| |||| || || Sbjct 1077 ATTCTGAATCTTGATTTGGTTGAGCAGTTAGTTCCAATCCTAAACTATGTGATGCTCAAG 1136 Query 1104 CAGTACAA 1111 |||||||| Sbjct 1137 CAGTACAA 1144 > AT3G26080.1 | Symbols: | plastid-lipid associated protein PAP / fibrillin family protein | chr3:9528774-9530496 FORWARD LENGTH=1021 Length=1021 Score = 813 bits (440), Expect = 0.0 Identities = 663/764 (87%), Gaps = 42/764 (5%) Strand=Plus/Plus Query 167 AGCTTTGTCCTGTTTTGATATCCATGGCTTTACCTTCGTGCTTAAAGACTGGAGGTTTAA 226 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 202 AGCTTTGTCCTGTTTTGATATCCATGGCTTTACCTTGGTGCTTAAAGACTGGAGTTTTAA 261 Query 227 TGTCTCCGGCCACTGGTTTTAATCTTTCCGGCAGTCTGATGAAGTTGGACAGTGGTTTTG 286 |||||||||| | || ||||||| | | || || ||||||||| || | Sbjct 262 CGTCTCCGGCCGCCGGATTTAATC-AT-C--CA-TC----------GGACAGTGGCTTCG 306 Query 287 CCGTTCCGATAAAGTTACAGAGTAATCGAAAAGGTGATCGAGAAAGATTGAGAATCCAAG 346 ||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||| Sbjct 307 CCGTTCCGACGAAGTTACTGAGTATTCGAAAAGGTGATCGGGAAAGATTGAGAATCCAAG 366 Query 347 CTGTCTTCAGTTTCCCTCCTGCGTTTCTGACAAGAAACGGTCGAGCTGAGAAGCAGAAAC 406 |||| ||||| || | | | || ||||||||||| |||| ||||||| ||||| Sbjct 367 CTGTTTTCAGCTT---T-C--C---TC---CAAGAAACGGTGGAGCCGAGAAGCGGAAAC 414 Query 407 AGCTCAAACAAGAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCTACGGCTTCAC 466 |||||||||| |||||| | ||||||||||||||||||||||||||||| || || || | Sbjct 415 AGCTCAAACATGAACTTGTCGAAGCCATTGAGCCTCTTGAACGTGGTGCCACTGCCTCGC 474 Query 467 CTGATGACCAGCTACGT-ATTGATCAGTTAGCGCGTAAAGTGGAAGCTGTTAATCCC-AC 524 ||||||| ||||| | | |||||||||||||| ||||| |||||||| | ||| ||| || Sbjct 475 CTGATGATCAGCTTC-TGATTGATCAGTTAGCACGTAAGGTGGAAGCAG-TAAACCCAAC 532 Query 525 CAAGGAGCCTCTGAAATCTGATTTGATCAATGGAAAATGGGAACTCATTTATACAACTTC 584 ||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| || Sbjct 533 CAAGGAGCCTCTGAAGTCTGATTTGATCAATGGGAAATGGGAGCTCATTTACACAACATC 592 Query 585 TGCTTCGATTTTGCAGGCAAAGAAACCGAGGTTCTTAAGATCAATAACCAACTACCAATC 644 |||| |||||||||| ||||||||||| |||||||||||||| |||| |||||||||| Sbjct 593 TGCTGCGATTTTGCAAGCAAAGAAACCAAGGTTCTTAAGATCGTTAACTAACTACCAATG 652 Query 645 TATCAATGTGGATACACTGAAGGTGCAAA-ACATGGAGACTTGGCCTTTCTATAACTCGG 703 ||||||| |||||||||| |||||||||| | |||||||||||||||||||||||||||| Sbjct 653 TATCAATATGGATACACTAAAGGTGCAAAGA-ATGGAGACTTGGCCTTTCTATAACTCGG 711 Query 704 TAACTGGAGACCTGAAACCCCTCAATTCGAAGAAAGTTGCTGTGAAACTCCAAGTGTTTA 763 ||||||||||| ||| ||||||||| ||||||| |||||||||||||| |||||||||| Sbjct 712 TAACTGGAGACTTGACACCCCTCAACTCGAAGACGGTTGCTGTGAAACTTCAAGTGTTTA 771 Query 764 AAATTCTCGGCTTTATTCCTGTAAAAGCACCTGATAG--C-GCACGCGGTGAACTAGAGA 820 ||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||||| Sbjct 772 AAATTCTCGGCTTTATTCCGGTAAAAGCACCTGATGGTACTGCACGCGGTGAACTAGAGA 831 Query 821 TTACTTATGTGGACGAAGAACTACGGTTATCAAGGGGTGACAAAGGGAACTTGTT-T--A 877 |||| ||||||||||| ||||||||| |||||||||| |||||| |||||||| | | Sbjct 832 TTACCTATGTGGACGAGGAACTACGGATATCAAGGGG---CAAAGGCAACTTGTTGTTTA 888 Query 878 TATTGAAGATGTTCGATCCCACTTATCGAATCCCTCTCTGATCT 921 ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 889 TATTGAAGATGTTTGATCCCACTTATCGAATCCCTCTCTGATCT 932 > AT3G26060.2 | Symbols: ATPRX Q | Thioredoxin superfamily protein | chr3:9524725-9526407 FORWARD LENGTH=1020 Length=1020 Score = 76.8 bits (41), Expect = 4e-13 Identities = 69/81 (85%), Gaps = 8/81 (10%) Strand=Plus/Plus Query 1112 TCTTTCATGCATGTCTCATGTCTGTCTCCATGA--CCTT--CC--C--ATACTGTTTCTT 1163 ||||||||||||||||||||||||||||||||| || | || | ||| ||||||| Sbjct 763 TCTTTCATGCATGTCTCATGTCTGTCTCCATGAGACCATGACCTTCTTATATTGTTTCTG 822 Query 1164 TTGATTATGAATTTTCAATAA 1184 |||| |||||||||||||||| Sbjct 823 TTGAGTATGAATTTTCAATAA 843 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58433434380 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5