BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484402 Length=1666 Score E Sequences producing significant alignments: (Bits) Value AT3G26400.1 | Symbols: EIF4B1 | eukaryotic translation initiati... 2540 0.0 AT1G13020.1 | Symbols: EIF4B2 | eukaryotic initiation factor 4B... 566 3e-160 > AT3G26400.1 | Symbols: EIF4B1 | eukaryotic translation initiation factor 4B1 | chr3:9666616-9669162 FORWARD LENGTH=1680 Length=1680 Score = 2540 bits (1375), Expect = 0.0 Identities = 1593/1692 (94%), Gaps = 39/1692 (2%) Strand=Plus/Plus Query 1 ATGGCGAAACCTTGGGGTGGAATTGGAATTGGGGCTTGGGCTGATGAAGCAGAGCGTGCC 60 ||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGTCGAAAGCTTGGGGTGGAATTGGAATTGGAGCTTGGGCTGATGAAGCAGAGCGTGCC 60 Query 61 GATGAAGAGCAAGCGGCGGAAGCTACTGCTGCGACGGCGGATACACAGAGTTTTCCTAGC 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GATGAAGAACAAGCGGCGGAAGCTACTGCTGCGACGGCGGATACACAGAGTTTTCCTAGC 120 Query 121 CTGAGAGA-G--GCTGCTGCGACTGCTACTAATGCTAAGTCTAGGAAGATGAAGAAGATG 177 |||||||| | |||||||||||||| |||| || ||||||||||||||||||||||||| Sbjct 121 CTGAGAGAGGCTGCTGCTGCGACTGCGACTAGTGGTAAGTCTAGGAAGATGAAGAAGATG 180 Query 178 AGTTTATCTGAGTTTACTACAGGTTCTTATACAGCACCTGGCGGTAGAAACTCTGTTGGA 237 |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 181 AGTTTATCTGAGTTTACTACAGGTGCTTATACAGCACCTGGAGGTAGAAACTCTGTTGGA 240 Query 238 TTGACTCAGCAAGAGATTCTTCAATTACCTACTGGTCCTAGACAACGTTCTGAGGAGGAA 297 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 241 TTGACTCAGCAAGAGATTCTTCAATTACCTACTGGTCCTAGACAACGTTCCGAGGAGGAA 300 Query 298 ATGCAACCTGGTCGATTAGGCGGTGGGTTTTCATCTTATGGTGGTCGTTCTGGTGGAAGA 357 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ATGCAACCTGGTCGTTTAGGCGGTGGGTTTTCATCTTATGGTGGTCGTTCTGGTGGAAGA 360 Query 358 ATGGGGAGAGATCGAGATGATTCTGATGGGTC-T----TGG-GGTGGTGGTGGTGGAGGA 411 || |||||||||||||||||||||||||| || | ||| |||||||||||||| ||| Sbjct 361 ATTGGGAGAGATCGAGATGATTCTGATGGCTCTTGGAGTGGTGGTGGTGGTGGTGGTGGA 420 Query 412 CGGAGACCTTATGGTGGTGGATTTGATGATGATAGGAGGGGAAATCAGTCTAGGGTTTCA 471 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 421 AGGAGACCTTATGGTGGTGGATTTGATGATGATAGGAGGGGGAATCAGTCTAGGGTTTCG 480 Query 472 GATTTTGCTCAACCTTCTAGAGCTGATGAGGTTGATGATTGGGGGAAAGCGAAGAAACCA 531 |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 481 GATTTTCCTCAACCTTCTAGAGCTGATGAGGTTGATGATTGGGGGAAAGAGAAGAAACCA 540 Query 532 CTTCCTTCTTTTGATCAAGGACGACAAGGTCGTTAcggtggcggtggaggtggttttgga 591 |||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| Sbjct 541 CTTCCTTCTTTTGATCAAGGACGACAAGGTCGTTACAGTGGCGATGGTGGTGGTTTTGGA 600 Query 592 ggcggtggtggaagtggttttggaggcggtggtggaagtggttttggaggcggtggtgga 651 |||||||||||||||||||||||||||||| | |||| |||| ||||| || Sbjct 601 ---GGTGGTGGAAGTGGTTTTGGAGGCGGTGGT-G--GTGG---TGGA---GGTGGAGGG 648 Query 652 TTATCTAGAGCTGATGATGTTGATAATTGGGGTGCAGGGAAAAGGCAAGCACCGGTTAGA 711 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 649 TTATCTAGAGCTGATGATGTTGATAATTGGGGTGCAGGGAAAAGGCAAGCACCGGTTAGA 708 Query 712 TCATCTACATTTGGGTCAAGTTTTGGTGATTCAGTTCAGGAGGAACGTCGTCGTTTGGTT 771 |||||||| |||||||| |||||||||||||||| |||||| |||||||||||||||||| Sbjct 709 TCATCTACGTTTGGGTCGAGTTTTGGTGATTCAGGTCAGGAAGAACGTCGTCGTTTGGTT 768 Query 772 TTGGAACCACGGAAGGTTGAATCAGGAGCG-AGTGAAACTCCAACTGTTATTGAGAAGAC 830 ||||||||| | |||||||| ||||||| | ||||| |||||| ||||| |||||||||| Sbjct 769 TTGGAACCAAGAAAGGTTGAGTCAGGAG-GAAGTGAGACTCCACCTGTTGTTGAGAAGAC 827 Query 831 GAGTAAGCCTAACCCGTTTGGAGCAGCTAGACCGAGGGAGGATGTTTTGGCGGAGAAAGG 890 ||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 828 GAGTAAGCCGAATCCATTTGGGGCAGCTAGACCGAGGGAGGATGTTTTGGCGGAGAAAGG 887 Query 891 TTTGGATTGGAAGAAGATTGACTCAGAGATTGAGGCTAAGAAAGGAGGTTCTCAAACGAG 950 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 888 TTTGGATTGGAAGAAGATTGACTCAGAGATTGAGGCTAAGAAAGGAAGTTCTCAAACGAG 947 Query 951 TAGGCCAACGAGTGCACATTCGAGCAGACCTTCTAGTGCTCAATCTAACAGGTCTGAGAG 1010 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 948 TAGGCCAACGAGTGCACATTCTAGTAGACCTTCTAGTGCTCAATCTAACAGGTCTGAGAG 1007 Query 1011 TTCAGGGTTGAATAATGTGGTGAAACCGAGACCAAAGGTGAATCCTTTTGGCGATGCGAA 1070 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1008 TTCAGGATTGAATAATGTGGTGAAACCGAGACCAAAGGTGAATCCTTTTGGCGATGCAAA 1067 Query 1071 GCCTCGAGAAGTGTTGCTAGAGGAACAAGGGAAGGATTGGCGTAAGATGGATATGGAACT 1130 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1068 GCCTCGAGAAGTGTTGTTAGAGGAACAAGGGAAGGATTGGCGTAAGATGGATTTGGAACT 1127 Query 1131 CGAGCATCGCAGGGTTGACAGGCCTgaaacagaagaagaaaagatgttgaaagaagagat 1190 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1128 CGAGCATCGCAGGGTTGACAGGCCTGAAACAGAAGAAGAGAAGATGTTGAAAGAAGAGAT 1187 Query 1191 tgaagaacaaaggaaaaaaCTCGAG-------CC--------AGATATCAAGGAATCTGA 1235 |||||| | |||||||||||||||| || ||| |||||||||||||| Sbjct 1188 TGAAGAGCTAAGGAAAAAACTCGAGAAGGAATCCGTTGCTCCAGAGATCAAGGAATCTGA 1247 Query 1236 TCAAGAACCTGGCAGTAATAATAATCACAATGATTTACCAGAAATAATACGTGGGAAAGA 1295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1248 TCAAGAACCTGGCAGTAATAATAATCACAATGATTTACCAGAAATAATACGTGGGAAAGA 1307 Query 1296 GAAAGATTTGGAAATACTAACCCGTGAATTGGACGACAAAGTCAGGTTCAGGCAGAAACC 1355 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1308 GAAAGATCTGGAAATACTAACCCGTGAATTGGACGACAAAGTCAGGTTCAGGCAGAAACC 1367 Query 1356 AGTTGAGAGGCCCGGGTCTGGTGCAGGCAGAACCGGAACATATTCAGAAAGAACACATTC 1415 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1368 AGTTGAGAGGCCCGGGTCTGGTGCAGGTAGAACCGGAACATATTCAGAAAGAACACATTC 1427 Query 1416 CCGGGCTGGATCAATTGATGAAACCAGGAGTTTTGAATCCACAGAGAGACCCAGATCACG 1475 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1428 CCGGGCTGGCTCAATTGATGAAACCAGGAGTTTTGAATCTACAGAGAGACCCAGATCACG 1487 Query 1476 TGGTGCCGTCGATGCCTGGGTTAGACCAGCCGATGATCAGCGAAGAAACTTCCAAGGAAG 1535 ||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| Sbjct 1488 TGGTGCCGTCGATGCCTGGGTTAGACCAGCCAATGAGCAGCGAAGAAACTTTCAAGGAAC 1547 Query 1536 CAAAGAGCGCGGATTCTTCAGCAACAGGTCTTCCTCTAGGGAAGGATGGTAAGAAGTAAA 1595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1548 CAAAGAGCGCGGATTCTTCAGCAACAGGTCTTCCTCTAGGGAAGGATGGTAAGAAGAAAA 1607 Query 1596 CGAAGAACAACCAAATGTGGGATATGTTTAACTACT-CTACTCAGTTCCCAGATTTTGAA 1654 ||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| Sbjct 1608 CGAAGAACAACCAAATGTGGGATATCTTTAACTACTACTACACAGTTCCCAGATTTTGAA 1667 Query 1655 GAAGACTTAGAG 1666 |||||||||||| Sbjct 1668 GAAGACTTAGAG 1679 > AT1G13020.1 | Symbols: EIF4B2 | eukaryotic initiation factor 4B2 | chr1:4440544-4443684 REVERSE LENGTH=2197 Length=2197 Score = 566 bits (306), Expect = 3e-160 Identities = 677/849 (80%), Gaps = 53/849 (6%) Strand=Plus/Plus Query 745 GTTCAGGAGGAACGTCGTCGT-TTGGT-TTTGGAACCACGGAAGGTTGAAT-CAGGAGCG 801 |||||||| || || |||||| || || ||| |||||||| |||| || || ||| || | Sbjct 948 GTTCAGGAAGAGCGACGTCGTCTT-GTATTT-GAACCACGAAAGGCTG-ATACAGAAGTG 1004 Query 802 AGTGAAACTCCAACTGTTATTGAGAAGACGAGTAAGCCTAACCCGTTTGGAGCAGCTAGA 861 |||||||||||||||| || ||||||||||||||| | || ||||||||||||||| Sbjct 1005 AGTGAAACTCCAACTG---CTGTGAAGACGAGTAAGCCGAGTCCATTTGGAGCAGCTAGA 1061 Query 862 CCGAGGGAGGATGTTTTGGCGGAGAAAGGTTTGGATTGGAAGAAGA-TTGACTCAGAGAT 920 ||||| ||| | ||||||||||||||||| ||||| |||||||| | ||||||| || || Sbjct 1062 CCGAGAGAGCAAGTTTTGGCGGAGAAAGGATTGGACTGGAAGAA-ACTTGACTCGGATAT 1120 Query 921 TGAGGCTAAGAAAGGAGGTTCTCAAACGAGTAGGCCAACGAGTGCACATTCGAGCAGACC 980 |||||| ||| || | || ||||| || || ||| | || || || ||||||||||| Sbjct 1121 TGAGGCCAAG-AA-G-GG---ACAAACAAGCAGACCATCAAGCGCGCAATCGAGCAGACC 1174 Query 981 TTCTAGTGCTCAATCTAACAGGTCTGAGAGTTCAGGGTTG---AA--T----AATGTGGT 1031 || ||||||||||||||||||||||||||||||| ||| || | |||||||| Sbjct 1175 ATCAAGTGCTCAATCTAACAGGTCTGAGAGTTCAGCATTGAACAATGTGGAGAATGTGGT 1234 Query 1032 GAAACCGAGACCAAAGGTGAATCCTTTTGGCGATGCGAAGCCTCGAGAAGTGTTGCTAGA 1091 |||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||||| || Sbjct 1235 GAAACCGAGACCAAAGGTGAATCCTTTTGGTGATGCAAAACCTCGGGAAGTATTGCTGGA 1294 Query 1092 GGAACAAGGGAAGGATTGGCGTAAGATGGATA-TGGAACTCGAGCATCGCAGGGTTGACA 1150 |||||||||||| |||||||| ||||| ||| || |||||||||||||||||||||||| Sbjct 1295 GGAACAAGGGAAAGATTGGCGCAAGATTGATTCTG-AACTCGAGCATCGCAGGGTTGACA 1353 Query 1151 GGCCTgaaacagaagaagaaaagatgttgaaagaagagattgaagaacaaaggaaaaaaC 1210 ||||||||||||| | ||| | ||||||||| |||||||||||||||| | |||| |||| Sbjct 1354 GGCCTGAAACAGAGGGAGAGAGGATGTTGAAGGAAGAGATTGAAGAACTACGGAAGAAAC 1413 Query 1211 TCGAGCCAG-AT--ATCAAG-GAATCTGAT--CAAG-AACCTGG-CAGTAAT---A-A-T 1257 ||||| || | | | | | | |||| |||| || || ||| ||| | | | Sbjct 1414 TCGAGA-AGGAGGCAGCCATTGCACCTGAGAGCAAGGAATCTCAACAGGAATCCGACAGT 1472 Query 1258 AATCAC-AATGATTTACCAGAAATAATACGTGGGAAAGAGAAAGATT-TGGAAATACTAA 1315 |||||| || || |||| || | ||||||| |||||| ||||| | || |||| | Sbjct 1473 AATCACCAAA-ATCTACCGGATCTCATACGTGAGAAAGA-AAAGAACCTAGACTTACTGA 1530 Query 1316 CCCGTGAATTGGACGACAAAGTCAGGTTCAGGC-A-GAAACCAGTTGAGAGGCCCGGGTC 1373 |||||| |||||||||||||||||||||||| | || | |||||||||||| || || Sbjct 1531 TCCGTGAGCTGGACGACAAAGTCAGGTTCAGGCCACGAG-C-AGTTGAGAGGCCTGGATC 1588 Query 1374 TGGTGCAGGCAGAACCGGAACATATTCAGAAAGAACACATTCCCGGGCTGGATCAATTGA 1433 ||||| ||||| ||| | |||||||||||| ||||||| |||||||||||||| || Sbjct 1589 CAGTGCAAGCAGAGGCGGTTCCTATTCAGAAAGACCACATTCACGGGCTGGATCAATCGA 1648 Query 1434 TGAAACCAGGAGTTTTGAATCCACAGAGAGACCCAGATCACGTGGTGCCGTCGATGCCTG 1493 ||| | |||||| ||||||||| || ||||| ||||||| ||| | | |||| || Sbjct 1649 TGAGTCTAGGAGTGTTGAATCCATGGAAAGACCTAGATCACATGGCACAGGCGATAATTG 1708 Query 1494 GGTTAGACCAGCCGATGATCAGCGAAGAAACTTCCAAGGAAGCAAAGAGCGCGGATTCTT 1553 | ||||||| ||||||| | ||||||||||||||||||||| || || |||||||| Sbjct 1709 GCCAAGACCAGTAGATGATC-G--AAGAAACTTCCAAGGAAGCAAGGAACGTGGATTCTT 1765 Query 1554 CAGCAACAG 1562 || |||||| Sbjct 1766 CAACAACAG 1774 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82328893800 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5