BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484409
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26460.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 798 0.0
AT3G26450.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 665 0.0
AT4G23670.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 394 5e-109
> AT3G26460.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr3:9683873-9684657 REVERSE
LENGTH=689
Length=689
Score = 798 bits (432), Expect = 0.0
Identities = 498/530 (94%), Gaps = 3/530 (1%)
Strand=Plus/Plus
Query 1 GAGAGAAAGAAATGGCTACGTCGGGGACATACGTGACGGAGGTACCGTTGAAAGGAACGG 60
|||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 40 GAGAGAGCGAAATGGCGACGTCGGGAACATACGTGACGGAGGTACCGTTAAAAGGAACAG 99
Query 61 CGGAGAAACACTTCAAGAGGTGGAGGAACGAGAACCATCTCTTCCCTGACGCCGTCGGTC 120
| |||||||||||| ||||||||||||||||||||||||||||||||||||| || || |
Sbjct 100 CAGAGAAACACTTCCAGAGGTGGAGGAACGAGAACCATCTCTTCCCTGACGCTGTTGGCC 159
Query 121 ACCACATCCAAGGTGTTACTGTTCACGATGGCGAATGGGACACTCACGGAGGCATCAAGA 180
||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||
Sbjct 160 ACCACATCCAAGGTGTTTCTGTTCACGACGGCGAATGGGACACTCACGGAAGCATCAAGA 219
Query 181 TTTGGAACTACACATTGGGAGATGGAACGCAGGAGGTATTCAAGGAGAGGAGAGAGATGG 240
||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||
Sbjct 220 TTTGGAACTACACATTGGGAGATGGAAAGCAAGAGGAATTCAAGGAGAGGAGAGAGATGG 279
Query 241 ACGACGAGAGTAACACAATGAAGGTTGTAGGACTGGAAGGTCACGTGATGGAGCAGCTCA 300
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 ACGATGAGAATAACACAATGAAGGTTGTAGGACTGGAAGGTCACGTGATGGAGCAGCTCA 339
Query 301 AGGTGTATGAGGTCGATTTCCAATTTATTCCCAAGTCTGAAGATGATTGCGTCTGCAAAA 360
||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 340 AGGTGTATGAGATCGATTTCCAATTTATTCCCAAGTCTGAAGAAGATTGCATCTGCAAAA 399
Query 361 TCACTATGATATGGGAGAAGCGCAACGATGATTTCCCCGAACCAAGCAGCTACATGCAAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 TCACTATGATATGGGAGAAGCGCAACGATGATTTCCCCGAACCAAGCAGCTACATGCAAC 459
Query 421 TCCTCAAGAGCATGGTTGTTGACATGGAGGACCACGTCCTTAAAGCTTAATATTGAACAT 480
||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||
Sbjct 460 TCCTCAAGAGCATGGTTATTGATATGGAGGACCACGTCCTTAAAGCTTAATC---AACAT 516
Query 481 CATCATCATCCCTATATGTCTATTAAGTTGTTTTCAATTATACCTATTAA 530
|| |||||||||||||||| |||||||||||||||||||||| ||| |||
Sbjct 517 CACCATCATCCCTATATGTTTATTAAGTTGTTTTCAATTATATCTAATAA 566
> AT3G26450.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr3:9681298-9683434 REVERSE
LENGTH=889
Length=889
Score = 665 bits (360), Expect = 0.0
Identities = 434/471 (92%), Gaps = 0/471 (0%)
Strand=Plus/Plus
Query 1 GAGAGAAAGAAATGGCTACGTCGGGGACATACGTGACGGAGGTACCGTTGAAAGGAACGG 60
|||||| ||||||||| |||||||| |||||||||||| |||| ||||| ||||||||||
Sbjct 125 GAGAGAGAGAAATGGCGACGTCGGGAACATACGTGACGCAGGTGCCGTTAAAAGGAACGG 184
Query 61 CGGAGAAACACTTCAAGAGGTGGAGGAACGAGAACCATCTCTTCCCTGACGCCGTCGGTC 120
|||||||||||||||||||| |||||||||||| |||||||||||||| | |||| |
Sbjct 185 TGGAGAAACACTTCAAGAGGTACAGGAACGAGAACTATCTCTTCCCTGACACTATCGGCC 244
Query 121 ACCACATCCAAGGTGTTACTGTTCACGATGGCGAATGGGACACTCACGGAGGCATCAAGA 180
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 245 ACCACATCCAAAGTGTTACTGTTCACGATGGCGAATGGGACACTCAAGGAGGCATCAAGA 304
Query 181 TTTGGAACTACACATTGGGAGATGGAACGCAGGAGGTATTCAAGGAGAGGAGAGAGATGG 240
|||||||||||||| | |||||||||| | |||||||||||||||||||||||||||| |
Sbjct 305 TTTGGAACTACACACTCGGAGATGGAAAGGAGGAGGTATTCAAGGAGAGGAGAGAGATAG 364
Query 241 ACGACGAGAGTAACACAATGAAGGTTGTAGGACTGGAAGGTCACGTGATGGAGCAGCTCA 300
|||| || | ||| | | |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 365 ACGATGACAATAAGATAGTGAAGGTTGTAGGATTGGAAGGTCACGTGATGGAGCAGTTCA 424
Query 301 AGGTGTATGAGGTCGATTTCCAATTTATTCCCAAGTCTGAAGATGATTGCGTCTGCAAAA 360
||||||||||| | || ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 425 AGGTGTATGAGATTGACTTCCAATTTATTCCCAACTCTGAAGAAGATTGCGTCTGCAAAA 484
Query 361 TCACTATGATATGGGAGAAGCGCAACGATGATTTCCCCGAACCAAGCAGCTACATGCAAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TCACTATGATATGGGAGAAGCGCAACGATGATTTCCCCGAACCAAGCAGCTACATGCAAC 544
Query 421 TCCTCAAGAGCATGGTTGTTGACATGGAGGACCACGTCCTTAAAGCTTAAT 471
|||||||||| |||||| |||| ||||||||||||||||||||||||||||
Sbjct 545 TCCTCAAGAGTATGGTTATTGATATGGAGGACCACGTCCTTAAAGCTTAAT 595
> AT4G23670.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr4:12332560-12333804 REVERSE
LENGTH=890
Length=890
Score = 394 bits (213), Expect = 5e-109
Identities = 393/478 (82%), Gaps = 19/478 (4%)
Strand=Plus/Plus
Query 1 GAGAGAAAGAAATGGCTACGTCGGGGACATACGTGACGGAGGTACCGTTGAAAGGAACGG 60
|||||||||||||||| || ||||| || |||||||||||||| |||||||||||| |||
Sbjct 138 GAGAGAAAGAAATGGCGACATCGGGAACGTACGTGACGGAGGTTCCGTTGAAAGGATCGG 197
Query 61 CGGAGAAACACTTCAAGAGGTGGAGGAACGAGAACCATCTCTTCCCTGACGCCGTCGGTC 120
|||||||||||| |||||| |||| || |||||||||| ||||| |||||||| | || |
Sbjct 198 CGGAGAAACACTACAAGAGCTGGAAGAGCGAGAACCATGTCTTCGCTGACGCCATTGGCC 257
Query 121 ACCACATCCAAGGTGTTACTGTTCACGATGGCGAATGGGACACTCACGGAGGC-ATCAAG 179
||||||||||| ||| ||||||||| |||||| ||| ||||||| | | |||| |
Sbjct 258 ACCACATCCAAAATGTCGTTGTTCACGAAGGCGAACATGACTCTCACGG-GTCTATCAGG 316
Query 180 ATTTGGAACTACACATTGGGA-GATGGAACGCAGGAGGTATTCAAGGAGAGGAGAGAGAT 238
| |||| |||||||| | | ||||||| | ||||| | ||||| |||| |||||||||
Sbjct 317 AGTTGGGACTACACA-T---ATGATGGAAAGAAGGAGATGTTCAAAGAGAAGAGAGAGAT 372
Query 239 GGACGACGAGAGTAACACAATGAAG-GTTGTAGGACTGGAAGGTCACGTGATGGAGCAGC 297
|| || |||| ||| ||| ||| | | ||||||||| ||||||||||||||||| |
Sbjct 373 AGATGATGAGAATAAAACATTGACGAAAAG-AGGACTGGATGGTCACGTGATGGAGCATC 431
Query 298 TCAAGGTGTATGAGGTCGAT-TTCCAATTTATTCCCAAGTCTGAAGATGA-TTGCGTCTG 355
|||| || | ||| || || | | ||||||||||||| ||||| ||| | ||||||||
Sbjct 432 TCAAAGTATTTGATATC-ATCTACGAATTTATTCCCAAATCTGAGGAT-AGCTGCGTCTG 489
Query 356 CAAAATCACTATGATATGGGAGAAGCGCAACGATGA-TTTCCCCGAACCAAGCAGCTACA 414
|||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||
Sbjct 490 CAAAATCACTATGATATGGGAGAAGCGCAACGATGACTTTCCC-GAACCAAGCGGCTACA 548
Query 415 TGCAACTCCTCAAG-AGCATGGTTGTTGACATGGA-GGACCACGTCCTTAAAGCTTAA 470
|| || || ||||| | |||||||||||||| || || ||||||| |||||||||
Sbjct 549 TGAAATTCGTCAAGCAA-ATGGTTGTTGACATTGAAGG-CCACGTCAACAAAGCTTAA 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26322693028
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5