BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484412
Length=1015
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26510.5 | Symbols: | Octicosapeptide/Phox/Bem1p family pro... 845 0.0
> AT3G26510.5 | Symbols: | Octicosapeptide/Phox/Bem1p family protein
| chr3:9710337-9712660 REVERSE LENGTH=1695
Length=1695
Score = 845 bits (457), Expect = 0.0
Identities = 621/694 (89%), Gaps = 36/694 (5%)
Strand=Plus/Plus
Query 215 GAGTTAGCGTCGAAGATGGCGGAGATGTGCGGTGGCGGCGGCGGTGGCGGCGGATCTACA 274
||||||||||||||||||||||||| | || |||||||| || ||||||||||| |
Sbjct 329 GAGTTAGCGTCGAAGATGGCGGAGA--T---GT-GCGGCGGC-GT--CGGCGGATCTATA 379
Query 275 ACCGTAACGATCCGATGTCAACTTCCGATGGAAGATCTCGATGCGCTCGTTTCAATTACT 334
|||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct 380 ACCGTAACGATCCGATGTCAGCTTCCGACGGAAGATCTCGACGCGCTCGTTTCAATTACT 439
Query 335 TCCGATGAAGATCTAGCGAATCTAATCGAAGAGTACGATCTCGTTTCTTCATCTTCTCCG 394
|||||||||||||||| |||||||||||||||||||||||||||||| || || ||||||
Sbjct 440 TCCGATGAAGATCTAGTGAATCTAATCGAAGAGTACGATCTCGTTTCCTCTTCATCTCCG 499
Query 395 ATGAAAATCAGAGTCTTCTTAAATCCACCAAAATCCGCCGTCGGATCTAGAAAATCACCG 454
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 500 ATGAAAATCAGAGTCTTCTTAAATCCACCAAAATCCGCCGCCGGATCTAAAAAATCTCCT 559
Query 455 CCTCCGTTAGCGTTACCGT--T-ATCCACCACGTCATCATCTTCTACTACTTCCTCTTCT 511
||||||||||||||||||| | | ||||||||||||||||||| || ||||||||| ||
Sbjct 560 CCTCCGTTAGCGTTACCGTCATCAACCACCACGTCATCATCTTCCACAACTTCCTCTACT 619
Query 512 TCATCAAGTCCTAGATCTCCGTCGT-TATCTAAACCACCGCTTCCTCCGTCACCGCCGAG 570
||||||||||||||||||||||| | |||| ||||||||||| |||||||| || |||||
Sbjct 620 TCATCAAGTCCTAGATCTCCGTC-TCTATCAAAACCACCGCTACCTCCGTCTCCACCGAG 678
Query 571 AATGACGACGGTTACGAAGAATCCATGTTACGGTTGTTATGTTCACCGTAATTCGAGAAA 630
||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 679 AATAACGACGGTTACGAAGAATCCGTGTTATGGTTGTTATGTTCACCGTAATTCCAGAAA 738
Query 631 TATCTACCTTGTTCACAACGGCAATCACTGGCAATAACGTGAAGAATCGTCGGAATATAC 690
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 739 TATCTACCTTGTTCACAACGGCAATCACTGGCAATAACGTGAAGAATCTTCG-AATATAC 797
Query 691 AATTaaaaaaaaaa-GTATCTTCGTTGTTTTATAA-AATGTAAAA--GAGCGAGAGAT-A 745
||||||||||||| | ||||||||| |||| | ||||||||| ||||||||||| |
Sbjct 798 GATTAAAAAAAAAAAGAATCTTCGTTTTTTTTTTCTAATGTAAAAAAGAGCGAGAGATTA 857
Query 746 TAATAGAAGGGTGTACGTGACCTGACCATCGCCATTAATGAAATCATCCCAAA---TTT- 801
|||||||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 858 TAATAGAAGGGTGTACGTGATCTAACCATCGCCATTAATGAAATCATCCCAAAAGCTTTT 917
Query 802 --------GTT-G--G-TGATGATGATGAATTGGGTAATTTACTTTATCCTTATAAAATT 849
||| | | ||||||||||||||||||||||||| | ||||||| |||||||
Sbjct 918 TATTCTCTGTTTGTTGGTGATGATGATGAATTGGGTAATTTAATCTATCCTTGTAAAATT 977
Query 850 CGAGCAAAGGCGTGATCGATTTTTCTCGTTTATG 883
||||||| ||||||||||||||||||||||||||
Sbjct 978 CGAGCAATGGCGTGATCGATTTTTCTCGTTTATG 1011
Score = 309 bits (167), Expect = 3e-83
Identities = 205/223 (92%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 1 GCTTGCACAGAACAAACCAAtcttctagaatcttccttcttccttcttcatctct-tctc 59
|||||||||||||||||||| |||||||| |||| || |||||||||||| |||| ||||
Sbjct 2 GCTTGCACAGAACAAACCAACCTTCTAGATTCTT-CTCCTTCCTTCTTCAACTCTCTCTC 60
Query 60 tc-tctACAGTTATGGTTGCATCTCCGACGAACTCAACAATCAAATTTCTCTGTAGCTAT 118
| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTTCTCCAGATATGGTTACATCTCCGACGAACTCAACAATCAAATTTCTCTGTAGCTAT 120
Query 119 GGCGGCAAAATCTTACCTCGTTATCCCGATGGCAAACTCCGTTACAACGACGGTCACACT 178
|||||||||||| |||||||||||||||| || |||||||||||||||| |||||||||
Sbjct 121 GGCGGCAAAATCCTACCTCGTTATCCCGACGGTAAACTCCGTTACAACGGTGGTCACACT 180
Query 179 CGCGTCCTCGCCGTTCCTCGCTCCATCTCATTTTCCGAGTTAG 221
|||||||||||||||||||||||| |||||||||||| |||||
Sbjct 181 CGCGTCCTCGCCGTTCCTCGCTCCGTCTCATTTTCCG-GTTAG 222
Score = 110 bits (59), Expect = 4e-23
Identities = 72/78 (92%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 939 CATTTTTCAAATAAGTACTTGCCTATCGAA-TATTAGCAAAGAAAATGTGAAACACATAT 997
||||||||||| |||||||||| ||| ||| | |||||||||||||| ||||||||||||
Sbjct 1576 CATTTTTCAAAGAAGTACTTGCATAT-GAAGTTTTAGCAAAGAAAATATGAAACACATAT 1634
Query 998 GATGTAAGATAGAAGTGC 1015
||||||||||||||||||
Sbjct 1635 GATGTAAGATAGAAGTGC 1652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49731805530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5