BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484417
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26520.1 | Symbols: TIP2, SITIP, GAMMA-TIP2, TIP1;2 | tonopl... 1862 0.0
AT2G36830.1 | Symbols: GAMMA-TIP, TIP1;1, GAMMA-TIP1 | gamma to... 643 0.0
AT5G28897.1 | Symbols: | pseudogene, gamma tonoplast intrinsic... 409 4e-113
> AT3G26520.1 | Symbols: TIP2, SITIP, GAMMA-TIP2, TIP1;2 | tonoplast
intrinsic protein 2 | chr3:9722443-9723815 REVERSE LENGTH=1201
Length=1201
Score = 1862 bits (1008), Expect = 0.0
Identities = 1123/1175 (96%), Gaps = 22/1175 (2%)
Strand=Plus/Plus
Query 1 TATATATACGTACAACACATAAGAAAACCAAACCAATCTCTTCACTCTCTCTTAATC-AA 59
||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| ||
Sbjct 17 TATATATACGTACAACACATAAGAAAAACAAACCAATCACTTCACTCTCTC-TAATCAAA 75
Query 60 AAGCTTTTAACCTCAGCCGTTAAATCTTTGTCCGATCATGCCGACCCGAAACATCGCCAT 119
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 76 AAGCTTTTAACCTCAGCCGTTAAATCTTTCTCCGATCATGCCGACCAGAAACATCGCCAT 135
Query 120 TGGTGGAGTCCAAGAAGAGGTCTATCACCCCAACGCACTTAGGGCGGCGCTCGCTGAGTT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 TGGTGGAGTCCAAGAAGAGGTCTATCACCCCAACGCACTTAGGGCGGCGCTCGCTGAGTT 195
Query 180 TATCTCGACTTTGATCTTCGTCTTTGCCGGATCAGGCTCCGGAATTGCTTTCAACAAGCT 239
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 196 TATCTCGACTTTGATCTTCGTCTTCGCCGGCTCAGGCTCCGGAATTGCTTTCAACAAGAT 255
Query 240 GACTGACAATGGAGCCACCACTCCTTCCGGCCTCGTCGCCGCTGCCTTAGCTCATGCTTT 299
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 CACTGACAATGGAGCAACCACTCCTTCCGGCCTCGTCGCCGCTGCCTTAGCTCATGCTTT 315
Query 300 CGGTCTCTTTGTCGCTGT-TGCTGTCGGCGCTAACATTTCCGGTGGCCACGTTAACCCTG 358
|||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||
Sbjct 316 CGGTCTCTTTGTCGCTGTCT-CTGTTGGCGCTAACATTTCCGGTGGCCACGTTAACCCTG 374
Query 359 CCGTTACCTTCGGTGTCTTACTCGGTGGTAACATCACTCTCCTCCGTGGTATTCTCTACT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 CCGTTACCTTCGGTGTCTTACTCGGTGGTAACATCACTCTCCTCCGTGGTATTCTCTACT 434
Query 419 GGATTGCTCAGCTTCTTGGCTCCGTCGCCGCTTGTTTCCTCCTTAGCTTTGCCACCGGTG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 GGATTGCTCAGCTTCTTGGCTCCGTCGCCGCTTGTTTCCTCCTTAGCTTTGCCACCGGTG 494
Query 479 GCGAGCCAATTCCAGCGTTCGGTCTCTCTGCCGGAGTAGGATCATTGAACGCTCTCGTCT 538
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 495 GCGAGCCAATTCCAGCGTTCGGTCTCTCTGCCGGAGTCGGATCATTAAACGCTCTCGTCT 554
Query 539 TCGAAATCGTGATGACCTTCGGGCTCGTCTACACCGTCTACGCCACAGCCGTTGACCCCA 598
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TCGAGATCGTGATGACCTTCGGGCTCGTCTACACCGTCTACGCCACAGCCGTTGACCCCA 614
Query 599 AGAAGGGTAGTCTCGGAACAATCGCACCAATCGCCATAGGTTTCATTGTTGGAGCTAACA 658
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 615 AGAACGGTAGTCTCGGAACAATCGCACCAATCGCCATAGGTTTCATCGTTGGAGCTAACA 674
Query 659 TCCTCGCCGGTGGAGCTTTCAGCGGAGCCTCCATGAACCCAGCCGTTGCTTTCGGACCAG 718
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 675 TCCTCGCCGGTGGAGCTTTCAGCGGAGCTTCCATGAACCCAGCCGTTGCTTTCGGACCAG 734
Query 719 CCGTCGTAAGCTGGACATGGACCAACCACTGGGTTTACTGGGCTGGTCCTCTTGTTGGTG 778
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 735 CCGTCGTAAGCTGGACGTGGACCAACCACTGGGTTTACTGGGCTGGTCCTCTTATTGGTG 794
Query 779 GTGGACTCGCCGGAATTATCTACGATTTTGTCTTCATCGATGAAAATGCCCACGAGCAAT 838
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 795 GTGGACTCGCCGGAATTATCTACGACTTTGTCTTCATCGATGAAAATGCCCACGAGCAAT 854
Query 839 TGCCAACCACCGATTACTGAAGACGTCAAATTCAATTGTTGTTAATCTGATGAAtttttc 898
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 855 TGCCTACCACCGATTACTGAAGACGTCAAATTCAAC-GTTGTTAATCTGATGAATTTTTC 913
Query 899 gtgattttg-ttttttaatttcgcatcgtaatgggtttctggccgttggatcttttttAG 957
||||||| | ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 914 GTGATTT-GCTTTTTTAATTT-GCATCGTAATGGGTTTCTGGCCGTTGGATCATTTTTAG 971
Query 958 ATGAATCTTTGTCT---G-TTGAT--TT---GTGTCTTTGGGTTTGTTGTTGGAGTTGTA 1008
|||||||||||||| | ||||| || |||||||||||||||||||||||||||||
Sbjct 972 ATGAATCTTTGTCTATTGATTGATCATTTATGTGTCTTTGGGTTTGTTGTTGGAGTTGTA 1031
Query 1009 ATAT-TCCTGGAAGGCTTTTGTGCAATTGTATTGTACGGTTTAATAACTTTTAATTGAGA 1067
|||| || ||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1032 ATATCTC-TGGAAGGCTTTTGTGCAATTGTATTGTACGGTTTAATAACTAT-AATTGAGA 1089
Query 1068 AAACCAGGGACTGTGTGAATTATGAAAATGAAtttttttttttttGTTTATTTTACTTAA 1127
|||||||||| |||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct 1090 AAACCAGGGAATGTG--AATTATGAAAATGAATTTTTTTGTTATTGTTTATTTTACTTAA 1147
Query 1128 AGAACCGTAGCTAATTTAGATCATAATTTAAGAGA 1162
||| || || |||||||||||||||||||| ||||
Sbjct 1148 AGAGCCCTAACTAATTTAGATCATAATTTACGAGA 1182
> AT2G36830.1 | Symbols: GAMMA-TIP, TIP1;1, GAMMA-TIP1 | gamma
tonoplast intrinsic protein | chr2:15445425-15446574 FORWARD
LENGTH=1059
Length=1059
Score = 643 bits (348), Expect = 0.0
Identities = 642/782 (82%), Gaps = 28/782 (4%)
Strand=Plus/Plus
Query 89 GTCCGATCATGCCGACCCGAAACATCGCCATTGGTGGAGTCCAAGAAGAGGTCTATCAC- 147
||||||||||||||| | |||||||||||||| | | |||| ||| || | | | | |
Sbjct 58 GTCCGATCATGCCGATCAGAAACATCGCCATT-G-GCCGTCC-AGATGAAG-CCA-CCCG 112
Query 148 -CCCAACGCACTT-AGGGCGGCGCTCGCTGAGTTTATCTCGACTTTGATCTTCGTCTTTG 205
||| | || ||| | ||||||| | |||||||| || || ||||||||||| ||| | |
Sbjct 113 TCCCGATGC-CTTAAAGGCGGCGTTGGCTGAGTTCATTTCAACTTTGATCTTTGTCGTCG 171
Query 206 CCGGATCAGGCTCCGGAATTGCTTTCAACAAGCTGACTGACAATGGAGCCACCACTCCTT 265
|||| |||||||| || || |||||||||||||| ||||| || ||||||||||||||||
Sbjct 172 CCGGTTCAGGCTCTGGCATGGCTTTCAACAAGCTCACTGAAAACGGAGCCACCACTCCTT 231
Query 266 CCGGCCTCGTCGCCGCTGCCTTAGCTCATG-CTTTCGGTCTCTTTGTCGCTGT-TGCTGT 323
| || ||||| || ||||| | ||||||| |||| || ||||| |||||||| | | ||
Sbjct 232 CTGGTCTCGTAGCTGCTGCAGTGGCTCATGCCTTT-GGACTCTTCGTCGCTGTCT-CAGT 289
Query 324 CGGCGCTAACATTTCCGGTGGCCACGTTAACCCTGCCGTTACCTTCGGTGTCTTAC-TCG 382
|| || ||||| || ||||| ||||||||||||||||| || ||||||| ||| | | |
Sbjct 290 TGGTGCCAACATCTCTGGTGGACACGTTAACCCTGCCGTCACTTTCGGTG-CTTTCATTG 348
Query 383 GTGGTAACATCACTCTCCTCCGTGGTATTCTCTACTGGATTGCTCAGCTTCTTGGCTCCG 442
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 349 GTGGTAACATCACTCTCCTCCGTGGTATCCTCTACTGGATTGCTCAGCTTCTCGGCTCCG 408
Query 443 TCGCCGCTTGTTTCCTCCTTAGCTTTGCCACCGGTGGCGAGCCAATTCCAGCGTTCGGTC 502
||| |||||| || |||||| || |||||||||||| | | | || || || ||||
Sbjct 409 TCGTCGCTTGCCTCATCCTTAAATTCGCCACCGGTGGCTTGGCTGTGCCGGCTTTTGGTC 468
Query 503 TCTCTGCCGGAGTAGGA-TCATTGAACGCTCTCGTCTTCGAAATCGTGATGACCTTCGGG 561
||||||| ||||||||| | ||||||||| |||| ||||| ||||||||||| ||||||
Sbjct 469 TCTCTGCTGGAGTAGGAGTG-TTGAACGCTTTCGTTTTCGAGATCGTGATGACATTCGGG 527
Query 562 CTCGTCTACACCGTCTACGCCACAGCCGTTGACCCCAAGAA-GGGTAGTCTCGGAACAAT 620
|| || |||||||||||||| |||||| |||||||||| || ||| ||||| ||||||||
Sbjct 528 CTTGTTTACACCGTCTACGCTACAGCCATTGACCCCAAAAACGGG-AGTCTTGGAACAAT 586
Query 621 CGCACCAATCGCCATAGGTTTCATTGTTGGAGCTAACATCCTCGCCGGTGGAGCTTTCAG 680
|| || ||||| || ||||||||||||||||| |||||| | || || |||||||||
Sbjct 587 TGCTCCCATCGCAATCGGTTTCATTGTTGGAGCCAACATCTTAGCTGGAGGAGCTTTCT- 645
Query 681 C-GGAGCCTCCATGAA-CCCAGCCGTTGCTTTCGGACCAGCCGTCGTAAGCTGGACATGG 738
| |||||||||||||| ||| ||||| |||||||||||||| || || ||||||||||||
Sbjct 646 CTGGAGCCTCCATGAATCCC-GCCGTGGCTTTCGGACCAGCGGTGGTGAGCTGGACATGG 704
Query 739 ACCAACCACTGGGTTTACTGGGCTGGTCCTCTTGTTGGTGGTGGACTCGCCGGAATTATC 798
|||||||||||||| |||||||| || ||||| || || |||||| |||| ||| | |||
Sbjct 705 ACCAACCACTGGGTCTACTGGGCCGGACCTCTCGTCGGCGGTGGAATCGCTGGACTCATC 764
Query 799 TACGAT-TTTGTCTTCATCGATGAAAATGCCCACGAGCAATTGCCAACCACCGATTACTG 857
||||| ||| |||||||| | | | | |||||||| | |||||||| || |||||
Sbjct 765 TACGAAGTTT-TCTTCATCAAC-ACCA--CACACGAGCAGCTCCCAACCACAGACTACTG 820
Query 858 AA 859
||
Sbjct 821 AA 822
> AT5G28897.1 | Symbols: | pseudogene, gamma tonoplast intrinsic
protein, similar to gamma tonoplast intrinsic protein; blastp
match of 73% identity and 1.7e-29 P-value to GP|5081419|gb|AAD39372.1|AF118381_1|AF118381
tonoplast intrinsic protein
{Brassica napus} | chr5:10923209-10923688 FORWARD LENGTH=480
Length=480
Score = 409 bits (221), Expect = 4e-113
Identities = 336/391 (86%), Gaps = 9/391 (2%)
Strand=Plus/Plus
Query 102 GACCCGAAACATCGCCATTGGTGGAGTCCAAGAAGAGGTCTATCACCCCAACGCACTTAG 161
|||| ||||||||||| || |||| ||||| ||||||||||| | | |||||||||||
Sbjct 6 GACCAGAAACATCGCCTTTTATGGATTCCAATAAGAGGTCTATTATCTGAACGCACTTAG 65
Query 162 GGCGGCGCTCGCTGAGTTTATCTCGACTTTGATCTTCGTCTTTGCCGGATCAGGCTCCGG 221
|| | |||| | ||||||||||||||||||||||||||||| || || ||| |||||||
Sbjct 66 GGTTGTGCTCTCAGAGTTTATCTCGACTTTGATCTTCGTCTTCGCTGGCTCATGCTCCGG 125
Query 222 AATTGCTTTCAACAAGCTGACTGACAATGGAGCCACCACTCCTTCCGGCCTCGTCGCCGC 281
|||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||
Sbjct 126 AATTGCTTTCAACAAGCTCACTAACAATGGAGCCACCACTCCTACCGGCCTCGTCGCCGC 185
Query 282 TGCCTTAGCTCATGCTTTCGGTCTCTTTGTCGCT-GTTGCTGTCGGCGCTAACATTTCCG 340
|||||||||||||||||| |||||| |||| | ||| |||| | |||||||||||| |
Sbjct 186 TGCCTTAGCTCATGCTTTAGGTCTCCTTGTTATTTGTTTCTGTTGTCGCTAACATTTCTG 245
Query 341 GTGGCCACGTTAACCCTGCCGTTACCTTCGGTGTCTTACTC-G-GTG---G---TAACAT 392
|||||||||||||||||| |||||| ||||||||||| ||| | ||| | ||||||
Sbjct 246 GTGGCCACGTTAACCCTGTCGTTACATTCGGTGTCTTTCTCAGTGTGTCAGAGGTAACAT 305
Query 393 CACTCTCCTCCGTGGTATTCTCTACTGGATTGCTCAGCTTCTTGGCTCCGTCGCCGCTTG 452
|| ||||||| |||||||| |||||| ||||||||||||| ||||||| |||||||| |
Sbjct 306 CATTCTCCTCAGTGGTATTTTCTACTTGATTGCTCAGCTTTTTGGCTCAGTCGCCGCGTA 365
Query 453 TTTCCTCCTTAGCTTTGCCACCGGTGGCGAG 483
||||||||||| |||| |||| |||| ||||
Sbjct 366 TTTCCTCCTTATCTTTCCCACTGGTGACGAG 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57027819120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5