BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484422
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26580.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1866 0.0
> AT3G26580.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:9758887-9760544 FORWARD LENGTH=1294
Length=1294
Score = 1866 bits (1010), Expect = 0.0
Identities = 1217/1310 (93%), Gaps = 41/1310 (3%)
Strand=Plus/Plus
Query 1 CTCTGGTTCTACTTGTTCCTCTG-TTTGGATTGTGGTGGTGGTGGTTCTCATGGCGGCGG 59
||||||||||||||||||||||| ||||||||||||| | | | ||| ||||||||||
Sbjct 1 CTCTGGTTCTACTTGTTCCTCTGTTTTGGATTGTGGT-G-GCT--CTCTAATGGCGGCGG 56
Query 60 TTATTGGAAACGTGGCGTTGTTACTTGACGTTAACTCTCACCGTACGGTGGTAACTGATC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 TTATTGGAAACGTGGCGTTGTTACTTGACGTTAACTCTCACCGTACGGTGGTAACTGATC 116
Query 120 GGAGAATTCGTTTAACGGTGGTTGACGTCGTTCTGAATTTACAAAAGAGAGATTCGCACA 179
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 117 GGAGAATTCGTTTAACGGTGGTCGACGTCGTTTTGAATTTACAAAAGAGAGATTCGCACA 176
Query 180 GTCACGTTTCTCACTACGCTGCTCTTTCCTCCAATAAGCCTCTTGAATCTGACGGCGAGG 239
||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 177 GTCACGTTTCTCATTACGCTGCTCTCTCTTCCAATAAGCCTCTTGAATCTGACGGCGAAG 236
Query 240 CTCGGATTCGCCGGTTTTTAACTCGCGGTAAGGCGAATTCGAGGGCTAACGCCGTCGATT 299
||||| |||||||||||||||||||||| || |||||||| || ||||||||||||||||
Sbjct 237 CTCGGGTTCGCCGGTTTTTAACTCGCGGAAAAGCGAATTCCAGAGCTAACGCCGTCGATT 296
Query 300 TCGACGACGCGGGATCCAGCGACGAGGAAAGTAGTGACGGAGGCGGTGGTGGTGGTGACg 359
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 297 TCGACGACGCGGGATCCAGCGACGAAGAAAGTAGTGACGGAGGCGGTGGTGGTGGTGACG 356
Query 360 aggaggaggaggaagact-tt--gatgtggagaaggagaggaagaggagagctaaggaat 416
||||||||||||| || | || |||||||||||||||||||||||||||||||||||||
Sbjct 357 AGGAGGAGGAGGAGGAATATTTCGATGTGGAGAAGGAGAGGAAGAGGAGAGCTAAGGAAT 416
Query 417 ttcaggatatgaaggagctagagaggaaagcagaggagTTGCAGTATAAGATTGACGAAG 476
|||| |||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 417 TTCATGATACGAAGGAGCTTGAGAGGAAAGCAGAGGAGTTACAGTATAAGATTGATGAAG 476
Query 477 AAGGAGACGATTCAGAGGAGAAGAAGAGGATGAGAGTGAA-ACGAGAGCTCCAAAAGGTA 535
|||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||
Sbjct 477 AAGGAGACGATTCAGAGGAGAAGAAGAGGATGAGAGTGAAGA-GAGAACTCCAAAAGGTA 535
Query 536 GCTCAGGAGCAAGCAGAGAGGAGAAAAACTGCAGAATTGATGTTTGAATTGGGTCAAAAG 595
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 536 GCTCAGGAGCAAGCAGAGAGGAGAAAAACTGCAGAATTGATGTTTGAACTAGGTCAAAAG 595
Query 596 GCTTATGGTAAAGGAATGTATGGACGCGCGATCGAGTTT-TTAGAAGGAGCTCTTACGAT 654
|||||||||||||||||||||||||| ||||| |||||| || |||||||||||||||||
Sbjct 596 GCTTATGGTAAAGGAATGTATGGACGAGCGATAGAGTTTCTT-GAAGGAGCTCTTACGAT 654
Query 655 TATCCCAAGGTCAACACTCTTTGGTGGTGAGATTCAAATTTGGTTAGCTATGGCATATGA 714
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 655 TATCCCAAGGCCAACACTCTTTGGTGGTGAGATACAAATTTGGTTAGCTATGGCATATGA 714
Query 715 GGCCAATAATCGCCACGCTGATTGCATTGATCTTTATCAGCAACTAGAGAAGAAACA-CC 773
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 715 GGCCAATAATCGCCACGCTGATTGCATTGATCTTTATCAGCAATTAGAGAAGAAACATCC 774
Query 774 CGAGTCCTGGTATTCGTCGTCAAGCTTCTGAGCTTCGGTATATCTTGCAAGCTCCTAAGC 833
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 C-AGTCCTGGTATTCGTCGTCAAGCTTCTGAGCTTCGGTATATCTTGCAAGCTCCTAAGC 833
Query 834 TTAAGATATCTCAAGAGGAAATGGTTACTATTCCAATGATCGGTTCAAGTTACGACAGCT 893
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 834 TTAAGATATCTCAGGAGGAAATGGTTACTATTCCCATGATCGGTTCAAGTTACGACAGCT 893
Query 894 ATGCAGTGACATGGAGTGACAAGGAGAGGGATAAGGAGCGGCGAATGAATGAATCGACTA 953
||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||
Sbjct 894 ATGCAGTGACATGGAGTGATAAGGAAAGGGATAAGGAGCGGCGAATGAATGCATCGACTA 953
Query 954 CGAATCAGCTCAACTCGAGTGAAGACTTTCTTGGAAAGCTCTTGGTTTGGCGACCAGCGG 1013
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||| | ||
Sbjct 954 CGAATCAGCTCAACTCGAGTGATGATTTTCTAGGAAAGCTCTTGGTTTGGCGACCGGTGG 1013
Query 1014 TCGGTATGGAGAAGAACCGAGTCTTTTGGCTTGCTTTGACACTGTGGTTCGGTTTGGTTG 1073
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1014 TCGGTATGGAGAAGAACCGAGTCTTTTGGCTTGCTTTGACACTGTGGTTTGGTTTGGTTG 1073
Query 1074 GAGCAGCACTCATCTTACAAAGATAAGTAGAA----T------T-TTT--C-ATCGCTTT 1119
|||||||||||||||||||||||||||||||| | | ||| | ||||||||
Sbjct 1074 GAGCAGCACTCATCTTACAAAGATAAGTAGAAGACATGCAAAATATTTTTCCATCGCTTT 1133
Query 1120 CAATTATGGTTTGGTACT---GTTTCTTCTACATGTCTTGAAATTATATTTGATTTCATG 1176
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1134 AAATTATGGTTTGGTACTACTGTTTCTTCTACTTGTCTTGAAATTATATTTGATTTCATG 1193
Query 1177 TATAAATTTGTAAGCAGATGAATTCGTTGtatatatatatatatatatagtatttgatgg 1236
||||||| |||||||| |||||||||| || | |||||| | | |||||||||||
Sbjct 1194 TATAAATGTGTAAGCAAATGAATTCGTCGT-TGTATATA-A-A------GTATTTGATGG 1244
Query 1237 aaatatatatataatttatgtatttgattatGTGTTCTCTTTTTATAGTT 1286
||||||||||| | ||| | ||||||||||||||| |||||||||||||
Sbjct 1245 AAATATATATA-ACTTTGTTTATTTGATTATGTGTAATCTTTTTATAGTT 1293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63252686700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5