BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484431
Length=1529
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26650.1 | Symbols: GAPA, GAPA-1 | glyceraldehyde 3-phosphat... 2386 0.0
AT1G12900.1 | Symbols: GAPA-2 | glyceraldehyde 3-phosphate dehy... 1254 0.0
> AT3G26650.1 | Symbols: GAPA, GAPA-1 | glyceraldehyde 3-phosphate
dehydrogenase A subunit | chr3:9795071-9797045 FORWARD LENGTH=1543
Length=1543
Score = 2386 bits (1292), Expect = 0.0
Identities = 1456/1532 (95%), Gaps = 23/1532 (2%)
Strand=Plus/Plus
Query 1 ACAACCATAGAAACAAGTAAGAAAGCTATCCAGAATCTAATCTTATTTGCCTCCAAGTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACAACCATAGAAACAAGTAAGAAAGCTATCCAGAATCTAATCTTATTTGCCTCCAAGTCA 60
Query 61 TCAATTCTTTATCCTATATTACCAATCTCTGCTTCACCAATCCTTTTTGCTCT-CTGTCT 119
|||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||
Sbjct 61 TCAATTCTTTATCCTATATTACTAGTCTCTGCTTCACCAATCCTTTTTGCTCTCCTGTCT 120
Query 120 GCTAC-AACCTTAACTTGGATTCTTTCTGGTCACCATGGCTTCGCTTACTTTCTCTGTGC 178
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 121 GCTACAAACCTTAACTTGGATTCTTTCTGGTCACCATGGCTTCGGTTACTTTCTCTGTCC 180
Query 179 CCAAGGGTTTCACTGAATTCTCAGGATTGCGAAGCTCCTCTGCTTGTCTTCCCTTTGGCA 238
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 181 CCAAGGGTTTCACTGAATTCTCAGGATTGCGAAGCTCCTCTGCTTCTCTTCCCTTCGGCA 240
Query 239 AGAAACTTTCTTCCGATGAGTTTGTTTCCATCGTATCCTTCCAGACTTCTGCAATGGGAA 298
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 241 AGAAACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAATGGGAA 300
Query 299 GCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAGGTGGCCATCAATGGAT 358
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 GCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAGGTGGCCATTAATGGAT 360
Query 359 TCGGTAGGATTGGGAGGAACTTCTTGAGATGTTGGCATGGTCGCAAAGACTCTCCTCTTG 418
|||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 361 TCGGTAGGATCGGGAGGAACTTCCTGAGATGTTGGCATGGTCGCAAGGACTCTCCTCTTG 420
Query 419 ATATCATTGCCATTAATGACACTGGTGGCGTCAAGCAGGCTTCCCATCTCCTTAAATACG 478
||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct 421 ATATCATTGCCATTAATGACACTGGTGGCGTCAAGCAGGCTTCGCATTTACTTAAATACG 480
Query 479 ACTCTACTCTCGGAATCTTTGATGCTGATGTCAAACCTTCTGGAGAGACTGCAATCTCTG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACTCTACTCTCGGAATCTTTGATGCTGATGTCAAACCTTCTGGAGAGACTGCAATCTCTG 540
Query 539 TTGATGGAAAGATCATCCAAGTTGTTTCTAACCGAAACCCGTCTCTTCTCCCCTGGAAGG 598
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 541 TTGATGGAAAGATCATCCAAGTTGTCTCTAACCGAAACCCGTCTCTTCTCCCTTGGAAGG 600
Query 599 AGTTAGGAATTGACATTGTCATCGAAGGAACCGGAGTGTTTGTCGATAGAGAAGGTGCAG 658
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 AGCTAGGAATTGACATTGTCATCGAAGGAACCGGAGTGTTTGTGGATAGAGAAGGTGCAG 660
Query 659 GGAAACACATTGAAGCTGGAGCCAAGAAGGTTATCATTACCGCTCCAGGGAAAGGAGATA 718
||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 661 GGAAACACATTGAAGCTGGTGCCAAGAAGGTTATCATTACTGCTCCAGGCAAAGGAGATA 720
Query 719 TTCCAACTTACGTCGTTGGTGTCAATGCAGATGCTTACAGTCATGATGAACCAATCATCA 778
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 721 TTCCAACTTATGTCGTTGGTGTCAATGCAGATGCTTACAGTCATGATGAACCTATCATCA 780
Query 779 GCAATGCATCTTGCACTACTAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAAT 838
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCAATGCATCTTGCACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAAT 840
Query 839 TTGGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGGTTGC 898
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCGGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGGTTGC 900
Query 899 TAGACGCAAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTTCCTA 958
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TAGACGCGAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTTCCTA 960
Query 959 CATCTACAGGAGCAGCTAAAGCTGTGGCTCTTGTGCTCCCTAACCTCAAGGGAAAACTCA 1018
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 961 CTTCTACAGGAGCAGCTAAAGCTGTGGCTCTTGTGCTCCCTAACCTCAAAGGAAAACTCA 1020
Query 1019 ACGGAATCGCTCTCCGTGTACCTACACCAAACGTATCAGTCGTTGATCTCGTTGTGCAGG 1078
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1021 ACGGGATCGCTCTCCGTGTACCAACACCAAACGTATCAGTGGTTGATCTCGTTGTGCAGG 1080
Query 1079 TTTCAAAGAAAACTTTTGCTGAGGAAGTTAACGCTGCTTTCAGAGATTCTGCTGAGAAAG 1138
| |||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1081 TCTCAAAGAAGACATTTGCTGAGGAAGTCAACGCTGCTTTCAGAGATTCTGCAGAGAAAG 1140
Query 1139 AGCTTAAAGGAATACTCGATGTCTGCGATGAGCCACTAGTGTCAGTTGATTTCAGATGCT 1198
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1141 AGCTTAAAGGTATACTCGATGTCTGCGATGAGCCACTAGTGTCCGTTGATTTCAGATGCT 1200
Query 1199 CAGATTATTCAACGACCATTGATTCATCACTCACTATGGTTATGGGAGATGATATGGTTA 1258
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CAGATTTTTCAACGACCATTGATTCATCACTCACTATGGTTATGGGAGATGATATGGTTA 1260
Query 1259 AGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCACAGAGAGTTGTTGACTTGGCTG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCACAGAGAGTTGTTGACTTGGCTG 1320
Query 1319 ACATTGTTGCCAACAACTGGAAGTGAATGTAActtttgaaatcaactttgtttcatgttt 1378
|||||||||||||||||||||||||| | | | | ||| | ||||||||||||||
Sbjct 1321 ACATTGTTGCCAACAACTGGAAGTGATT-TCA-TC---AAA-C---TTTGTTTCATGTTT 1371
Query 1379 ttccatttattctcttttctcttttttttttttACATTATGATTCTCAAAATATCGGTGA 1438
|||||||| || | | |||||| | |||||||||||||| ||||||||||||||||||
Sbjct 1372 TTCCATTT-TT-T-T---CTCTTTCTCTTTTTTACATTATGGTTCTCAAAATATCGGTGA 1425
Query 1439 AGACTGTATAATTGTAGTCCTG-AGTTATGGATTTGTAATAATAATAAACTATTCAAACT 1497
|||||||||||||||||| || | || || | | |||||| ||||||||||||||||
Sbjct 1426 AGACTGTATAATTGTAGTA-TGGA-TT-TGTAATA--AATAATCATAAACTATTCAAACT 1480
Query 1498 TGTTTACATTTTGTGTTTTATGAAACACTTTT 1529
||||||||||||||||||| ||| ||||||||
Sbjct 1481 TGTTTACATTTTGTGTTTTGTGATACACTTTT 1512
> AT1G12900.1 | Symbols: GAPA-2 | glyceraldehyde 3-phosphate dehydrogenase
A subunit 2 | chr1:4392450-4394400 REVERSE LENGTH=1501
Length=1501
Score = 1254 bits (679), Expect = 0.0
Identities = 1138/1352 (84%), Gaps = 62/1352 (5%)
Strand=Plus/Plus
Query 22 AAAGCTATCCAGAATCTAATCTTATTTGCCTCCAAGTCATCAATTC-T-TTATCCTATAT 79
||||||||||||||||| ||||| ||||||||||| ||| |||||| | || ||||||||
Sbjct 1 AAAGCTATCCAGAATCTCATCTTCTTTGCCTCCAACTCAGCAATTCATATTTTCCTATAT 60
Query 80 TACCAATCTCTGCTTCACCAATCCTTTTTGCTCT-CTGTCTGCTACAACCTTAA-CTTGG 137
|| ||| |||| | | || | | || |||| | | || ||||| | || |||
Sbjct 61 TA-CAA-CTCT-C-T-GCC--T-C-TTCTGCT-TAC-ATC--ATACAA-C--AAGCTT-- 102
Query 138 ATTCTTTCTGGTCA-CCATGGCTTC-GCTTACTTTCTCTGT-G-C---CCA-------AG 183
||| |||||| | |||||||||| || |||||||||||| | | ||| ||
Sbjct 103 -CTCTCTCTGGT-AGCCATGGCTTCGGC-TACTTTCTCTGTGGCCAAACCATCTCTTCAG 159
Query 184 GGTTTCACTGAATTCTCAGGA-TTGCGAAGCTCCTCTGCTTGTCTTCCCTTTGGCAAGA- 241
||||| |||| ||||||||| || |||| ||||||||| ||||||||||| |||||
Sbjct 160 GGTTTTTCTGAGTTCTCAGGACTT-CGAAACTCCTCTGC---TCTTCCCTTTGCCAAGAG 215
Query 242 AACTTTCTTCCGATGAGTTTGTTTCCATCGT-ATCCTTCCAGACTTCTGCAATGGGAAGC 300
| | |||||||||||||||||||||| |||| | ||||| |||||||||||| |||||
Sbjct 216 ATC-TTCTTCCGATGAGTTTGTTTCCTTCGTCA-GTTTCCAAACTTCTGCAATGAGAAGC 273
Query 301 AGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAGGTGGCCATCAATGGATTC 360
| |||||||||||||||||| ||||| ||||||||| | ||||| ||||||||||| |||
Sbjct 274 AATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAGGTAGCCATCAATGGGTTC 333
Query 361 GGTAGGATTGGGAGGAACTTCTTGAGATGTTGGCATGGTCGCAAAGACTCTCCTCTTGAT 420
||||||||||| |||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 334 GGTAGGATTGGTAGGAACTTCTTGAGGTGTTGGCATGGTCGTAAGGACTCTCCTCTTGAT 393
Query 421 ATCATTGCCATTAATGACACTGGTGGCGTCAAGCAGGCTTCCCATCTCCTTAAATACGAC 480
|| ||| |||||| ||||||||||| || || || || || |||||||| |||||||||
Sbjct 394 GTCGTTGTCATTAACGACACTGGTGGTGTTAAACAAGCATCACATCTCCTCAAATACGAC 453
Query 481 TCTACTCTCGGAATCTTTGATGCTGATGTCAAACCTTCTGGAGAGACTGCAATCTCTGTT 540
|| ||||| ||||||||||| ||||||||||||||||| ||||| | || ||||||||
Sbjct 454 TCAACTCTTGGAATCTTTGACGCTGATGTCAAACCTTCAGGAGACTCAGCTCTCTCTGTT 513
Query 541 GATGGAAAGATCATCCAAG-TTGTTTCTAACCGAAACCCGTCTCTTCTCCCCTGGAAGGA 599
|||||||||||||| |||| |||| ||| | || ||||| ||| |||||||||| |||
Sbjct 514 GATGGAAAGATCAT-CAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGGGA 572
Query 600 GTTAGGAATTGACATT-GTCATCGAAGGAACCGGAGTGTTTGTCGATAGAGAAGGTGCAG 658
|||| |||||| || || ||||||||||||||||||||||| || ||||| ||||| |
Sbjct 573 ACTAGGCATTGAC-TTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGAGACGGTGCTG 631
Query 659 GGAAACACATTGAAGCTGGAGCCAAGAAGGTTATCATTACCGCTCCAGGGAAAGGAGATA 718
|||| ||| || | |||||||||||||||||| | || || || || || ||||| || |
Sbjct 632 GGAAGCACCTTCAGGCTGGAGCCAAGAAGGTTCTTATCACTGCACCTGGAAAAGGTGACA 691
Query 719 TTCCAACTTACGTCGTTGGTGTCAATGCAGATGC-TTACAGTCATGATGA-ACCAATCAT 776
| |||||||| ||||||||||||||||| || | |||||| ||||| || | | |||||
Sbjct 692 TCCCAACTTATGTCGTTGGTGTCAATGCTGA-ACTTTACAGCCATGAAGATA-CGATCAT 749
Query 777 CAGCAATGCATCTTGCACTACTAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAA 836
||||||||| ||||| |||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct 750 CAGCAATGCGTCTTGTACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAA 809
Query 837 ATTTGGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGGTT 896
|||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 810 ATTTGGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAAGGTT 869
Query 897 GCTAGACGCAAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTTCC 956
| |||| || || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 870 GTTAGATGCGAGCCACCGTGATCTAAGGAGAGCAAGAGCAGCAGCTTTGAACATTGTTCC 929
Query 957 TACATCTACAGGAGCAGCTAAAGCTGTGGCTCTTGTGCTCCCTAACCTCAAGGGAAAACT 1016
||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 930 AACATCTACAGGAGCAGCCAAAGCTGTGGCTCTTGTGCTTCCTAACCTCAAAGGAAAACT 989
Query 1017 CAACGGAATCGC-TCTCCGTGTACCTACACCAAACGTATCAGTCGTTGATCTC-GTTGTG 1074
|||||||| || | | ||||| || || |||||||| ||||| ||||| || || |||
Sbjct 990 TAACGGAATTGCAT-TGCGTGTGCCAACTCCAAACGTTTCAGTGGTTGA-CTTAGTCGTG 1047
Query 1075 CAGGTTTCAAAGAAAACTTTTGCTGAGGAAGTTAACGCTGCTTTCAGAGATTCTGCTGAG 1134
|| || || ||||||||||||||||| ||||| || ||||||||||||||| | ||||||
Sbjct 1048 CAAGTCTCCAAGAAAACTTTTGCTGAAGAAGTCAATGCTGCTTTCAGAGATGCAGCTGAG 1107
Query 1135 AAAGAGCTTAAAGGAATACTCGATGTCTGCGATGAGCCACTAGTGTCAGTTGATTTCAGA 1194
|||||||||||||| || || || ||||| |||||||| || || || ||||| |||||
Sbjct 1108 AAAGAGCTTAAAGGTATCCTTGACGTCTGTGATGAGCCTCTTGTCTCTGTTGACTTCAGG 1167
Query 1195 TGCTCAGAT-TATTCAACGACCATTGATTCATCACTCACTATGGTTATGGGAGATGATAT 1253
||||| ||| ||| | | || |||||||| || ||||| ||||||||||||||||||||
Sbjct 1168 TGCTCTGATGTATCCTCC-ACTATTGATTCTTCCCTCACAATGGTTATGGGAGATGATAT 1226
Query 1254 GGTTAAGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCACAGAGAGTTGTTGACTT 1313
|||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 1227 GGTTAAAGTGATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGAGTCGTTGATTT 1286
Query 1314 GGCTGACATTGTTGCCAACAACTGGAAGTGAA 1345
|||||||||||||||||| |||||||||||||
Sbjct 1287 GGCTGACATTGTTGCCAATAACTGGAAGTGAA 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75451419135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5