BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484443 Length=1003 Score E Sequences producing significant alignments: (Bits) Value AT3G26710.1 | Symbols: CCB1 | cofactor assembly of complex C | ... 1498 0.0 > AT3G26710.1 | Symbols: CCB1 | cofactor assembly of complex C | chr3:9813371-9814750 FORWARD LENGTH=1127 Length=1127 Score = 1498 bits (811), Expect = 0.0 Identities = 963/1031 (93%), Gaps = 32/1031 (3%) Strand=Plus/Plus Query 1 TTTTGGATAGACCCATCATGTAAAGGTTTAAGC------TTTGTTAGCCAAAGAGAAAGC 54 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 101 TTTTGGATAGACCCATCATGTAAAGGTTTAAGCTTTTTTTTTGTTAGCCAAAGAGAAAGC 160 Query 55 tttttttAGTTCTCTTGACAATGGCGACGAAGCTGATTTCACCGCCGTTGTCTTGTCCAT 114 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 161 -CTTTTTAGTTCTATTGACAATGGCGACGAAGCTGATTTCTCCGCCGTTGTCTTGTCCGT 219 Query 115 GGGTTACTTCAAGAGAGGTG-TCAATCAAAGGGCTTCCACGTCGGAGAAGAGAATGGATG 173 |||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||| Sbjct 220 GGGTTACTTCAAGAGAGGTGAT-AATCAAAGGGCTTCCACGGCGGAGAAGAGAATGGATG 278 Query 174 GTCACGAAGAGAAACAGAGTCTCTGCTGTCACCGCCATGATTGTGGAGCCACTTTCTGTT 233 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 279 GTCACGAAGAGAAACAGAGTCTCTGCTGTCACGGCCATGATTGTGGAGCCACTTTCTGTT 338 Query 234 GTTTCTTCTTCAGCGATTCAGATTCATCACTGGTGGGAACAAAACCCTAATTCGTTACTG 293 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 339 GTTTCTTCTTCAGCAATTCAGATTCATCAATGGTGGGAACAAAACCCTAATTCGTTACTG 398 Query 294 TTAATGACGGAGGCTACTGGTGGTTATTCGTTGGCCAGCTATTACACGTCTTTGGGTTTG 353 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 399 TTAATGACGGAGGCTACTGGTGGTTATTCGTTGGCTAGCTATTATACGTCTTTGGGTTTG 458 Query 354 TTTGTTATCTCTGTTCCTGGTCTTTGGTCTCTTATCAAACGCTCTGTTAAATCTAAGATA 413 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 459 TTTGTTATCTCTGTTCCTGGTCTTTGGTCTCTAATCAAACGCTCTGTTAAATCAAAGATA 518 Query 414 GTGAGAAAGACGTTTGTTGTTAATGAAGTCAAGAAGGAACCAAAGCAAGTAGCTGGAGAG 473 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 519 GTGAGAAAGACGTTTGTTGTTAATGACGTCAAGAAGGAGCCAAAGCAAGTAGCTGGAGAG 578 Query 474 ATTCTATCTTTCTTCACAAGGAAGAATTTCAACATCACTGATCGAGGAGAGACGATCACG 533 |||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| Sbjct 579 ATTCTATCTTTCTTCACAAGGAAGAATTTCAATATCACTGATCGTGGAGAAACAATCACA 638 Query 534 TTTGAAGGAAAGATGGTTCCAAGTAGAGGACAAGCTGCTCTGCTTACGTTTTGTACATGT 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 639 TTTGAAGGAAAGATGGTTCCAAGTAGAGGACAAGCTGCTCTGCTTACGTTTTGTACATGT 698 Query 594 ATAAGCTTAGCAAGTGTTGGTCTTGTCTTAACCATTACAGTGCCTGATTTTGGAAACAAT 653 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 699 ATAAGCTTAGCAAGTGTTGGTCTTGTCTTAACCATTACAGTTCCTGATTTTGGAAACAAT 758 Query 654 TGGTTCTTCATCACCCTTCTCAGCCCACTCGCAGGAGTGTATTACTGGAAAAAGGCGTCG 713 ||||||||||||| || || || |||||||||||||||||||||||||||||||||||| Sbjct 759 TGGTTCTTCATCATTCTCCTTAGTCCACTCGCAGGAGTGTATTACTGGAAAAAGGCGTCG 818 Query 714 AGGAAAGAGGAGATAAAAGTGAAGATGATGGTGGGAGAAAAAGGGAAATTGGATGAGATT 773 |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 819 AGGAAAGAGGAGATAAAAGTGAAGATGATGGTGGGATCAAAAGGGAGATTGGATGAGATT 878 Query 774 GTGGTTCAAGGAGATGATGTTCAGGTTGAAGAGATGAGGAAGGAGCTTCAGCTTAGTGAG 833 |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| |||| Sbjct 879 GTGGTTCAAGGAGATGATGTTCAGGTCGAAGAAATGAGGAAAGAGCTTCAGCTTAATGAG 938 Query 834 AAAGGCATGGTTTATGTCAAAGGTCTCTTTGAGAGATCATCATAAT--TA-CATTTTAGC 890 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 939 AAAGGCATGGTTTATGTCAAAGGTCTCTTTGAGAGATCATCATAATGATAACATTTTAGC 998 Query 891 CTCTCCCAATTTTGCCTTTTGGGGAATGTGTTTATACTT-TT--A--A---T-GA----- 936 ||| || | |||||||||||||||||||||| ||||||| || | | | || Sbjct 999 CTC-CC-ATTTTTGCCTTTTGGGGAATGTGTCTATACTTGTTTTATTAAGGTTGAGATTA 1056 Query 937 ----CTTTTTAACTCATTTTCCATACTTCATACTAAACAAATCGATTTGAATATAGTTCA 992 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 1057 ATGACTTTTTAACTCATTTCCCATACTTCATACTAAACGAATCGATTTGAATATAGTTCA 1116 Query 993 TTTGATTGAGC 1003 ||||||||||| Sbjct 1117 TTTGATTGAGC 1127 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49128995766 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5